Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004827

Physical Location & Seq

Genomic Coordinates Reverse (-)

49325587 .. 49327088

Gene Structure 1502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0342300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCACCCCTTAATCTTCATCTTATGGCCTCTATATTTGGAATTATGGGTACCGTCGGCTCGTTCCTCGTTTACCTAGCTCCAATACCCACATTTTATTGGATTTACAAGAAAAAATCAACATATGGATTCCCATCTCTACCCTACTCAGTGGCATTGTTTAGCGCCATGTTGACGCTCTACTATGCCTTCCTCAAGACACATTCTATGATTATCATCGCGATCAATTCTCTTGGCATCTTAATTGAAACCGGGTACCTTTTATTGTTCATGATTTATGCACCACCAAAATCCAGGATCTTCACAGCAAAGTTTCTTGGCCTCTTTAATGTTTTGGGTTTTGGTTTGATCGTATTATGTACATGCCTAATCCCAAATGATTTTCTGCGGTTGAAAATTGTTGGGTGGGTTACTATCGTGTTTAATGTTGGTGTATTTGCTGCTCCTCTTACTATTCTGAAACACGTTATCAAAACAAAGAGTTGCGAGTTCATGTCATTCTCTTTGTCATTAAGCTTAACCCTATGTGCTGTCCTGTGGTTCTTCTATGGCCTTCTAATAAGAGATTTATTCATAGCGGCACCAAACGTGTTAGGGTTTATATTCGGGATTGTGCAGATGATGATGTTCTACATCTACCGGAAGAGCACAAAGAAAGCTGGTTTACCGATAGATAGTCTAAATGATCAGACACTAAGCACAAACAGACGGGTTGCTGTTCCGGAAAATGCTGACATAAGAGTAGCAATGACAATAATTGACATTGGTACTCAGATTCAGTTGAAAGCAGGGGACGCAAAGAAGAGTTCTGAAACTGATGATCATGAGAATCAACTACCAAAGCAGGGGCGGCCGGAAGACAAGGGGTCGCCCACCACCGCCTTGGGACTCACACTCAGAAGGGCCTCAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAH RRM_1

Protein Analysis

304

Amino Acids

33.83

Weight (kDa)

9.55

Isoelectric Point (pI)

33.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	12 - 97	9.5e-19	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	133 - 217	2.3e-26	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11470 AT5G11470
fragaria_vesca	FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260 FvH4_2g36260
malus_domestica	MD08G1120100.v1.1 MD15G1099300.v1.1
prunus_persica	Prupe.1G454000_v2.0.a1
pyrus_communis	pycom08g10040 pycom15g09130
rosa_chinensis	RchiOBHm_Chr6g0305631
rosa_laevigata	RLG00000010871
rosa_multiflora	Rmu_sc0001809.1_g000016
rosa_roxburghii	Rroxscaffold_7G00162510
rosa_rugosa	Rorug06G0342300
rosa_samantha	Rh6AG454200 Rh6BG447300 Rh6CG467900 Rh6DG454500
rosa_wichuraiana	Rw6G039600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	50, 255
AccB1I	GGYRCC	4 cut(s)	4, 50, 255, 580
AccII	CGCG	1 cut(s)	221
AccIII	TCCGGA	1 cut(s)	721
AciI	CCGC	4 cut(s)	388, 578, 850, 879
AclWI	GGATC	1 cut(s)	305
AcoI	YGGCCR	1 cut(s)	851
AfaI	GTAC	4 cut(s)	52, 257, 361, 769
AfiI	CCNNNNNNNGG	1 cut(s)	845
AflIII	ACRYGT	2 cut(s)	463, 588
AgsI	TTSAA	3 cut(s)	248, 394, 784
AhdI	GACNNNNNGTC	1 cut(s)	865
AjnI	CCWGG	1 cut(s)	293
AluBI	AGCT	3 cut(s)	80, 516, 659
AluI	AGCT	3 cut(s)	80, 516, 659
Alw21I	GWGCWC	1 cut(s)	650
AlwI	GGATC	1 cut(s)	305
Aor13HI	TCCGGA	1 cut(s)	721
AoxI	GGCC	5 cut(s)	27, 319, 550, 851, 903
ApeKI	GCWGC	1 cut(s)	440
Asp718I	GGTACC	2 cut(s)	50, 255
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	903
AsuC2I	CCSGG	1 cut(s)	253
BanI	GGYRCC	4 cut(s)	4, 50, 255, 580
BbsI	GAAGAC	1 cut(s)	864
Bbv12I	GWGCWC	1 cut(s)	650
BbvI	GCAGC	1 cut(s)	427
BccI	CCATC	1 cut(s)	142
BciT130I	CCWGG	1 cut(s)	295
BclI	TGATCA	2 cut(s)	685, 820
BcnI	CCSGG	1 cut(s)	253
BfaI	CTAG	1 cut(s)	77
BfoI	RGCGCY	1 cut(s)	168
BisI	GCNGC	3 cut(s)	441, 579, 851
BlsI	GCNGC	3 cut(s)	442, 580, 852
Bme1390I	CCNGG	2 cut(s)	253, 295
BmeRI	GACNNNNNGTC	1 cut(s)	865
BmgT120I	GGNCC	1 cut(s)	903
BmiI	GGNNCC	4 cut(s)	6, 52, 257, 582
BmrFI	CCNGG	2 cut(s)	253, 295
BmsI	GCATC	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	864
BpuEI	CTTGAG	1 cut(s)	179
BpuMI	CCSGG	1 cut(s)	253
BsaBI	GATNNNNATC	2 cut(s)	133, 215
BsaJI	CCNNGG	1 cut(s)	882
BsaWI	WCCGGW	2 cut(s)	639, 721
Bsc4I	CCNNNNNNNGG	1 cut(s)	845
Bse3DI	GCAATG	1 cut(s)	753
Bse8I	GATNNNNATC	2 cut(s)	133, 215
BseAI	TCCGGA	1 cut(s)	721
BseBI	CCWGG	1 cut(s)	295
BseDI	CCNNGG	1 cut(s)	882
BseJI	GATNNNNATC	2 cut(s)	133, 215
BseLI	CCNNNNNNNGG	1 cut(s)	845
BseMI	GCAATG	1 cut(s)	753
BseMII	CTCAG	3 cut(s)	162, 785, 910
BseRI	GAGGAG	1 cut(s)	435
BseX3I	CGGCCG	1 cut(s)	851
BseXI	GCAGC	1 cut(s)	427
BsgI	GTGCAG	1 cut(s)	635
Bsh1236I	CGCG	1 cut(s)	221
Bsh1285I	CGRYCG	1 cut(s)	854
BshFI	GGCC	5 cut(s)	29, 321, 552, 853, 905
BshNI	GGYRCC	4 cut(s)	4, 50, 255, 580
BsiEI	CGRYCG	1 cut(s)	854
BsiHKAI	GWGCWC	1 cut(s)	650
BsiSI	CCGG	4 cut(s)	252, 640, 722, 854
BslFI	GGGAC	2 cut(s)	806, 900
BslI	CCNNNNNNNGG	1 cut(s)	845
BsmFI	GGGAC	2 cut(s)	806, 900
BsnI	GGCC	5 cut(s)	29, 321, 552, 853, 905
Bsp1286I	GDGCHC	1 cut(s)	650
Bsp13I	TCCGGA	1 cut(s)	721
Bsp1407I	TGTACA	1 cut(s)	359
Bsp143I	GATC	5 cut(s)	222, 297, 348, 685, 820
Bsp68I	TCGCGA	1 cut(s)	221
BspACI	CCGC	4 cut(s)	388, 578, 850, 879
BspANI	GGCC	5 cut(s)	29, 321, 552, 853, 905
BspCNI	CTCAG	3 cut(s)	161, 784, 909
BspEI	TCCGGA	1 cut(s)	721
BspFNI	CGCG	1 cut(s)	221
BspHI	TCATGA	2 cut(s)	270, 823
BspLI	GGNNCC	4 cut(s)	6, 52, 257, 582
BspPI	GGATC	1 cut(s)	305
BspQI	GCTCTTC	1 cut(s)	638
BspT107I	GGYRCC	4 cut(s)	4, 50, 255, 580
BsrDI	GCAATG	1 cut(s)	753
BsrGI	TGTACA	1 cut(s)	359
BssECI	CCNNGG	1 cut(s)	882
BssMI	GATC	5 cut(s)	222, 297, 348, 685, 820
BssT1I	CCWWGG	1 cut(s)	882
Bst2UI	CCWGG	1 cut(s)	295
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	2 cut(s)	638, 797
BstAUI	TGTACA	1 cut(s)	359
BstDEI	CTNAG	4 cut(s)	148, 695, 771, 896
BstFNI	CGCG	1 cut(s)	221
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	5 cut(s)	225, 300, 351, 688, 823
BstMBI	GATC	5 cut(s)	222, 297, 348, 685, 820
BstMCI	CGRYCG	1 cut(s)	854
BstMWI	GCNNNNNNNGC	2 cut(s)	794, 850
BstNI	CCWGG	1 cut(s)	295
BstNSI	RCATGY	1 cut(s)	366
BstSCI	CCNGG	2 cut(s)	251, 293
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	1 cut(s)	427
BstV2I	GAAGAC	1 cut(s)	864
BstX2I	RGATCY	1 cut(s)	297
BstXI	CCANNNNNNTGG	1 cut(s)	883
BstYI	RGATCY	1 cut(s)	297
BstZI	CGGCCG	1 cut(s)	851
BsuRI	GGCC	5 cut(s)	29, 321, 552, 853, 905
BtgZI	GCGATG	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	156
BtuMI	TCGCGA	1 cut(s)	221
CciI	TCATGA	2 cut(s)	270, 823
CfoI	GCGC	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	903
CseI	GACGC	2 cut(s)	184, 803
Csp6I	GTAC	4 cut(s)	51, 256, 360, 768
CviAII	CATG	5 cut(s)	169, 271, 363, 493, 824
CviJI	RGCY	9 cut(s)	29, 60, 80, 321, 516, 552, 659, 853, 905
CviKI_1	RGCY	9 cut(s)	29, 60, 80, 321, 516, 552, 659, 853, 905
CviQI	GTAC	4 cut(s)	51, 256, 360, 768
DdeI	CTNAG	4 cut(s)	148, 695, 771, 896
DpnI	GATC	5 cut(s)	224, 299, 350, 687, 822
DpnII	GATC	5 cut(s)	222, 297, 348, 685, 820
DriI	GACNNNNNGTC	1 cut(s)	865
EaeI	YGGCCR	1 cut(s)	851
EagI	CGGCCG	1 cut(s)	851
Eam1104I	CTCTTC	2 cut(s)	638, 797
Eam1105I	GACNNNNNGTC	1 cut(s)	865
EarI	CTCTTC	2 cut(s)	638, 797
EclXI	CGGCCG	1 cut(s)	851
Eco130I	CCWWGG	1 cut(s)	882
Eco52I	CGGCCG	1 cut(s)	851
EcoO109I	RGGNCCY	1 cut(s)	903
EcoRII	CCWGG	1 cut(s)	293
EcoT14I	CCWWGG	1 cut(s)	882
ErhI	CCWWGG	1 cut(s)	882
FaeI	CATG	5 cut(s)	172, 274, 366, 496, 827
FaqI	GGGAC	2 cut(s)	806, 900
FatI	CATG	5 cut(s)	168, 270, 362, 492, 823
FauNDI	CATATG	1 cut(s)	124
FbaI	TGATCA	2 cut(s)	685, 820
Fnu4HI	GCNGC	3 cut(s)	441, 579, 851
Fsp4HI	GCNGC	3 cut(s)	441, 579, 851
FspBI	CTAG	1 cut(s)	77
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	3 cut(s)	441, 579, 851
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	5 cut(s)	29, 321, 552, 853, 905
HapII	CCGG	4 cut(s)	252, 640, 722, 854
HgaI	GACGC	2 cut(s)	184, 803
HhaI	GCGC	1 cut(s)	167
Hin1II	CATG	5 cut(s)	172, 274, 366, 496, 827
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HindIII	AAGCTT	1 cut(s)	514
HinfI	GANTC	4 cut(s)	129, 775, 829, 888
HpaII	CCGG	4 cut(s)	252, 640, 722, 854
Hpy166II	GTNNAC	3 cut(s)	73, 174, 665
Hpy188I	TCNGA	5 cut(s)	459, 690, 774, 811, 899
Hpy188III	TCNNGA	6 cut(s)	196, 220, 271, 607, 722, 824
Hpy8I	GTNNAC	3 cut(s)	73, 174, 665
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	3 cut(s)	199, 563, 894
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	2 cut(s)	465, 588
HpyCH4V	TGCA	2 cut(s)	281, 616
HpyF10VI	GCNNNNNNNGC	2 cut(s)	794, 850
HpyF3I	CTNAG	4 cut(s)	148, 695, 771, 896
HpySE526I	ACGT	2 cut(s)	465, 588
Hsp92II	CATG	5 cut(s)	172, 274, 366, 496, 827
HspAI	GCGC	1 cut(s)	165
Kpn2I	TCCGGA	1 cut(s)	721
KpnI	GGTACC	2 cut(s)	54, 259
Ksp22I	TGATCA	2 cut(s)	685, 820
Kzo9I	GATC	5 cut(s)	222, 297, 348, 685, 820
LguI	GCTCTTC	1 cut(s)	638
LmnI	GCTCC	2 cut(s)	85, 448
Lsp1109I	GCAGC	1 cut(s)	427
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	1 cut(s)	77
MaeII	ACGT	2 cut(s)	465, 588
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	5 cut(s)	224, 299, 350, 687, 822
MboI	GATC	5 cut(s)	222, 297, 348, 685, 820
MboII	GAAGA	6 cut(s)	8, 292, 535, 655, 814, 869
MflI	RGATCY	1 cut(s)	297
MhlI	GDGCHC	1 cut(s)	650
MluCI	AATT	5 cut(s)	42, 226, 243, 396, 756
MlyI	GAGTC	1 cut(s)	882
MnlI	CCTC	5 cut(s)	40, 77, 203, 332, 456
MroI	TCCGGA	1 cut(s)	721
MseI	TTAA	6 cut(s)	12, 242, 327, 423, 512, 518
MspI	CCGG	4 cut(s)	252, 640, 722, 854
MspR9I	CCNGG	2 cut(s)	253, 295
MvaI	CCWGG	1 cut(s)	295
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	2 cut(s)	794, 850
NciI	CCSGG	1 cut(s)	253
NdeI	CATATG	1 cut(s)	124
NdeII	GATC	5 cut(s)	222, 297, 348, 685, 820
NlaIII	CATG	5 cut(s)	172, 274, 366, 496, 827
NlaIV	GGNNCC	4 cut(s)	6, 52, 257, 582
NruI	TCGCGA	1 cut(s)	221
NspI	RCATGY	1 cut(s)	366
PagI	TCATGA	2 cut(s)	270, 823
PciSI	GCTCTTC	1 cut(s)	638
PfeI	GAWTC	3 cut(s)	129, 775, 829
PfoI	TCCNGGA	1 cut(s)	293
PkrI	GCNGC	3 cut(s)	442, 580, 852
PleI	GAGTC	1 cut(s)	882
PpsI	GAGTC	1 cut(s)	882
Psp6I	CCWGG	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	293
PspN4I	GGNNCC	4 cut(s)	6, 52, 257, 582
PspPI	GGNCC	1 cut(s)	903
PsuI	RGATCY	1 cut(s)	297
RruI	TCGCGA	1 cut(s)	221
RsaI	GTAC	4 cut(s)	52, 257, 361, 769
RsaNI	GTAC	4 cut(s)	51, 256, 360, 768
SapI	GCTCTTC	1 cut(s)	638
SaqAI	TTAA	6 cut(s)	12, 242, 327, 423, 512, 518
SatI	GCNGC	3 cut(s)	441, 579, 851
Sau3AI	GATC	5 cut(s)	222, 297, 348, 685, 820
Sau96I	GGNCC	1 cut(s)	903
SchI	GAGTC	1 cut(s)	882
ScrFI	CCNGG	2 cut(s)	253, 295
SduI	GDGCHC	1 cut(s)	650
SetI	ASST	7 cut(s)	78, 82, 261, 468, 518, 591, 661
SfaNI	GCATC	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	5 cut(s)	42, 226, 243, 396, 756
SsiI	CCGC	4 cut(s)	388, 578, 850, 879
SspMI	CTAG	1 cut(s)	77
StyD4I	CCNGG	2 cut(s)	251, 293
StyI	CCWWGG	1 cut(s)	882
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	2 cut(s)	468, 591
TasI	AATT	5 cut(s)	42, 226, 243, 396, 756
TatI	WGTACW	1 cut(s)	359
TauI	GCSGC	2 cut(s)	581, 853
TfiI	GAWTC	3 cut(s)	129, 775, 829
Tru1I	TTAA	6 cut(s)	12, 242, 327, 423, 512, 518
Tru9I	TTAA	6 cut(s)	12, 242, 327, 423, 512, 518
TscAI	CASTG	1 cut(s)	156
TseI	GCWGC	1 cut(s)	440
TspDTI	ATGAA	4 cut(s)	8, 259, 481, 562
TspRI	CASTG	1 cut(s)	156
XceI	RCATGY	1 cut(s)	366
XcmI	CCANNNNNNNNNTGG	1 cut(s)	880
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.