RLG00000010871

BAH domain

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
4983847 .. 4990870
7024 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010871

Sequence Viewer

Length: 1845 bp
ATGGATAAGATAGAGGGGAAAATTGCTGATGTTGATGTTAAATTCCTTTTTAACAGAATGAATATTCAGAAGCCTGCTGGCGATCTGAATGTTGATTTAGGAAAAAACAAAGTCTCTGGTAATGACACAACTAGTAATGAAACAATGGTTCCATCAAAGCAAAACTCGTTTAAAGAACACATAAATTTAGAGACAACGGGAAATTCTTTTGATAAGCATAAACTTTGTGTGGAAGAGCGGATATCTGCCGTAGGTTTAGAATCAAGTGAGATGGATAAAAGTGATGAAAGACAACATGATATGTCAAGTCCTAAGACTATCTTAAGTTCTAAAGGTAAAAGTAGGGAGGAAGAGGTTAATCTTGACAATGTTCTTCCAAGAGAGCTTGAGGTGGAAGAAACAATCTCTACTAAGGAGGTTGGCGATTTGGACAATAGACCAACGAAGAAGGTGAAGCTTGATACTAGTAAAGCATCTAGTGACGATAGAAATAGTCACGAGCAAAGACATGTTGAGGCGGAAGAAAATAGCAATAATAGAAAGAGTAATGCTATATTGGAGCACACAGAACTTGAGAAGGCAAACATGAATGCAAGCCGAAGTAGCGAGCATAAACACAAGATCAACGCTAATGGGAGTTATATGAAGGATTTATCACCAATTGCTTCTCCAGTCGATGAAAGATGTAAACGCAAAGGTGTAGAGGATACTATTGGGACAAATAAAAGCCATACCAAGAAGATGAAGCCGGATGGTAACACAACAATTCCTTCCAATGACAAGTTGCCCAAATCATTGCATGGAGACGGTAAAAGTAAGGCCCAAAAGGCTTTATCACCAAGTAGCTCCACCATCGATGATAAGTGTAAACGTAAAGATGGAGGGGAGTCTTTAGTGTTGGACAAAGACTCTAAGAAGAAGATGAAGGTTGGTGATAAGGGGACAAGTCTTTCCACTAGCAAGCCGCCTAGACCAACCCCAAGGCCGCCTAAAAATAAGGCCCAAAAGTTTGATGGTCAAGTGTTGGAAGTCACCCAACATTCGGATGCGAGTAATGTTGATGGGAATGATAATAAGACTTCATCACCAATTGCTTTTGGATTTGATGATTCGCTTGGGAAACACAAAGCCCCTTTCGAGAAGATGAAGTCCGATGTTAAGGCCCCAAGACTTTCCAATAGGGAGTTGCGTGAACAATGTTCCACACAGTCGCAAAATAAGTCCCAAAAGTTAGATGGTCAAGTTGTGGAAGTTACTCAACGTCCGGGTGCGGATAGAAGAAAGTGGTTCAAGAAGTTTCCCTGGCAAGAGAGAATGCAAGCTGCACACGAGCAAGGAACCCTCATTTTGCTTCAGAATTTGGATCCGGCTTACACATCAGCAGAAGTGGAGGATATAGTATGGAATGGATTGGGGGAAAGTTGCACAGCTAAGATGATTCAGCAAACTGCAAGTTCCAGCCCTTACTCTGGACAAGCTCTGGTTATTTTTAAAACTCGGGAAACAGCGCAGAAGGTTGTTAGAAAATTAGATGAGGGCTGCCTGTTATTGTCAAATGGAAGACCTCTAGTTGGCAGCACTGCAACAACTCCTTGTTCCACAGAAAAGAAGCCACATTTTTTTGGTCATCTAGTCATTGATAAACTTCGGCACCCAATGCTAAATGAAAGGGAAATGAAAGAAGCTGTTTCTACTTCACATTTTTCCCAGCCTAACACTATTGAATATGATATGTCCATGGAATGGTGTGCACAACAAGAGAAATCAGATCTTTTGTGGAAGAACCTGTATAAGCAACAATGGAAGGAGGTTAGAGAACTCAAAGCTAAACTTAAGGCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

615

Amino Acids

68.78

Weight (kDa)

8.93

Isoelectric Point (pI)

40.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1650
AccB7I CCANNNNNTGG 1 cut(s) 1743
AccBSI CCGCTC 1 cut(s) 238
AciI CCGC 5 cut(s) 238, 518, 965, 986, 1271
AclWI GGATC 2 cut(s) 1358, 1371
AcsI RAATTY 4 cut(s) 41, 184, 202, 1357
AcuI CTGAAG 1 cut(s) 1337
AfiI CCNNNNNNNGG 4 cut(s) 1042, 1469, 1571, 1743
AflII CTTAAG 2 cut(s) 322, 1832
AflIII ACRYGT 1 cut(s) 508
AgsI TTSAA 2 cut(s) 1291, 1724
AhlI ACTAGT 2 cut(s) 131, 464
AjnI CCWGG 1 cut(s) 1301
AluBI AGCT 8 cut(s) 385, 457, 846, 1322, 1430, 1478, 1685, 1826
AluI AGCT 8 cut(s) 385, 457, 846, 1322, 1430, 1478, 1685, 1826
Alw21I GWGCWC 2 cut(s) 564, 1753
Alw26I GTCTC 3 cut(s) 118, 185, 798
Alw44I GTGCAC 1 cut(s) 1749
AlwI GGATC 2 cut(s) 1358, 1371
Ama87I CYCGRG 1 cut(s) 1497
AoxI GGCC 5 cut(s) 819, 983, 999, 1161, 1836
ApaLI GTGCAC 1 cut(s) 1749
ApeKI GCWGC 3 cut(s) 1322, 1539, 1575
ApoI RAATTY 4 cut(s) 41, 184, 202, 1357
AspLEI GCGC 1 cut(s) 1510
AspS9I GGNCC 3 cut(s) 820, 1000, 1162
AsuC2I CCSGG 1 cut(s) 1266
AsuHPI GGTGA 6 cut(s) 463, 648, 828, 944, 1024, 1077
AvaI CYCGRG 1 cut(s) 1497
BaeGI GKGCMC 1 cut(s) 1753
BamHI GGATCC 1 cut(s) 1363
BanI GGYRCC 1 cut(s) 1650
BauI CACGAG 2 cut(s) 497, 1328
BbsI GAAGAC 1 cut(s) 1567
Bbv12I GWGCWC 2 cut(s) 564, 1753
BbvI GCAGC 3 cut(s) 1309, 1526, 1587
BccI CCATC 8 cut(s) 160, 265, 746, 860, 872, 1007, 1055, 1229
BceAI ACGGC 1 cut(s) 233
BciT130I CCWGG 1 cut(s) 1303
BciVI GTATCC 1 cut(s) 700
BcnI CCSGG 1 cut(s) 1266
BcoDI GTCTC 3 cut(s) 118, 185, 798
BcuI ACTAGT 2 cut(s) 131, 464
BfaI CTAG 7 cut(s) 132, 465, 477, 957, 969, 1568, 1631
BfrI CTTAAG 2 cut(s) 322, 1832
BfuI GTATCC 1 cut(s) 700
BglI GCCNNNNNGGC 1 cut(s) 827
BglII AGATCT 1 cut(s) 1768
BisI GCNGC 5 cut(s) 965, 986, 1323, 1540, 1576
BlsI GCNGC 5 cut(s) 966, 987, 1324, 1541, 1577
Bme1390I CCNGG 2 cut(s) 1266, 1303
BmeT110I CYCGRG 1 cut(s) 1497
BmgT120I GGNCC 3 cut(s) 820, 1000, 1162
BmiI GGNNCC 5 cut(s) 150, 1164, 1339, 1365, 1652
BmrFI CCNGG 2 cut(s) 1266, 1303
BmsI GCATC 2 cut(s) 482, 1036
BpiI GAAGAC 1 cut(s) 1567
BpmI CTGGAG 1 cut(s) 654
BpuEI CTTGAG 2 cut(s) 407, 593
BpuMI CCSGG 1 cut(s) 1266
Bsa29I ATCGAT 1 cut(s) 855
BsaJI CCNNGG 3 cut(s) 980, 1301, 1737
Bsc4I CCNNNNNNNGG 4 cut(s) 1042, 1469, 1571, 1743
Bse1I ACTGG 1 cut(s) 671
Bse3DI GCAATG 1 cut(s) 794
BseBI CCWGG 1 cut(s) 1303
BseCI ATCGAT 1 cut(s) 855
BseDI CCNNGG 3 cut(s) 980, 1301, 1737
BseGI GGATG 2 cut(s) 757, 1051
BseLI CCNNNNNNNGG 4 cut(s) 1042, 1469, 1571, 1743
BseMI GCAATG 1 cut(s) 794
BseNI ACTGG 1 cut(s) 671
BseSI GKGCMC 1 cut(s) 1753
BseXI GCAGC 3 cut(s) 1309, 1526, 1587
BseYI CCCAGC 1 cut(s) 1707
BsgI GTGCAG 1 cut(s) 1308
BshFI GGCC 5 cut(s) 821, 985, 1001, 1163, 1838
BshNI GGYRCC 1 cut(s) 1650
BshVI ATCGAT 1 cut(s) 855
BsiHKAI GWGCWC 2 cut(s) 564, 1753
BsiHKCI CYCGRG 1 cut(s) 1497
BsiSI CCGG 3 cut(s) 749, 1265, 1367
BslFI GGGAC 3 cut(s) 730, 955, 1207
BslI CCNNNNNNNGG 4 cut(s) 1042, 1469, 1571, 1743
BsmAI GTCTC 3 cut(s) 118, 185, 798
BsmBI CGTCTC 1 cut(s) 798
BsmFI GGGAC 3 cut(s) 730, 955, 1207
BsmI GAATGC 2 cut(s) 595, 1320
BsnI GGCC 5 cut(s) 821, 985, 1001, 1163, 1838
BsoBI CYCGRG 1 cut(s) 1497
Bsp1286I GDGCHC 2 cut(s) 564, 1753
Bsp143I GATC 4 cut(s) 82, 621, 1363, 1768
Bsp19I CCATGG 1 cut(s) 1737
BspACI CCGC 5 cut(s) 238, 518, 965, 986, 1271
BspANI GGCC 5 cut(s) 821, 985, 1001, 1163, 1838
BspDI ATCGAT 1 cut(s) 855
BspLI GGNNCC 5 cut(s) 150, 1164, 1339, 1365, 1652
BspPI GGATC 2 cut(s) 1358, 1371
BspQI GCTCTTC 1 cut(s) 228
BspT107I GGYRCC 1 cut(s) 1650
BspTI CTTAAG 2 cut(s) 322, 1832
BsrBI CCGCTC 1 cut(s) 238
BsrDI GCAATG 1 cut(s) 794
BsrI ACTGG 1 cut(s) 671
BssECI CCNNGG 3 cut(s) 980, 1301, 1737
BssMI GATC 4 cut(s) 82, 621, 1363, 1768
BssSI CACGAG 2 cut(s) 497, 1328
BssT1I CCWWGG 2 cut(s) 980, 1737
Bst2BI CACGAG 2 cut(s) 497, 1328
Bst2UI CCWGG 1 cut(s) 1303
Bst4CI ACNGT 2 cut(s) 809, 1209
Bst6I CTCTTC 2 cut(s) 228, 345
BstAFI CTTAAG 2 cut(s) 322, 1832
BstAPI GCANNNNNTGC 1 cut(s) 1657
BstC8I GCNNGC 6 cut(s) 75, 79, 595, 608, 962, 1320
BstDEI CTNAG 4 cut(s) 312, 411, 912, 1431
BstDSI CCRYGG 1 cut(s) 1737
BstF5I GGATG 2 cut(s) 757, 1051
BstHHI GCGC 1 cut(s) 1510
BstKTI GATC 4 cut(s) 85, 624, 1366, 1771
BstMAI GTCTC 3 cut(s) 118, 185, 798
BstMBI GATC 4 cut(s) 82, 621, 1363, 1768
BstMWI GCNNNNNNNGC 3 cut(s) 603, 827, 1657
BstNI CCWGG 1 cut(s) 1303
BstNSI RCATGY 1 cut(s) 512
BstSCI CCNGG 2 cut(s) 1264, 1301
BstSLI GKGCMC 1 cut(s) 1753
BstV1I GCAGC 3 cut(s) 1309, 1526, 1587
BstV2I GAAGAC 1 cut(s) 1567
BstX2I RGATCY 2 cut(s) 1363, 1768
BstYI RGATCY 2 cut(s) 1363, 1768
Bsu15I ATCGAT 1 cut(s) 855
BsuI GTATCC 1 cut(s) 700
BsuRI GGCC 5 cut(s) 821, 985, 1001, 1163, 1838
BsuTUI ATCGAT 1 cut(s) 855
BtgI CCRYGG 1 cut(s) 1737
BtsCI GGATG 2 cut(s) 757, 1051
BtsI GCAGTG 1 cut(s) 1578
BtsIMutI CAGTG 1 cut(s) 1578
Cac8I GCNNGC 6 cut(s) 75, 79, 595, 608, 962, 1320
CfoI GCGC 1 cut(s) 1510
Cfr13I GGNCC 3 cut(s) 820, 1000, 1162
ClaI ATCGAT 1 cut(s) 855
CviAII CATG 5 cut(s) 296, 509, 586, 800, 1738
DdeI CTNAG 4 cut(s) 312, 411, 912, 1431
DpnI GATC 4 cut(s) 84, 623, 1365, 1770
DpnII GATC 4 cut(s) 82, 621, 1363, 1768
DraI TTTAAA 2 cut(s) 172, 1492
Eam1104I CTCTTC 2 cut(s) 228, 345
EarI CTCTTC 2 cut(s) 228, 345
EciI GGCGGA 1 cut(s) 533
Eco130I CCWWGG 2 cut(s) 980, 1737
Eco32I GATATC 1 cut(s) 243
Eco57I CTGAAG 1 cut(s) 1337
Eco88I CYCGRG 1 cut(s) 1497
EcoO109I RGGNCCY 1 cut(s) 1162
EcoRII CCWGG 1 cut(s) 1301
EcoRV GATATC 1 cut(s) 243
EcoT14I CCWWGG 2 cut(s) 980, 1737
ErhI CCWWGG 2 cut(s) 980, 1737
Esp3I CGTCTC 1 cut(s) 798
FaeI CATG 5 cut(s) 299, 512, 589, 803, 1741
FalI AAGNNNNNCTT 3 cut(s) 305, 337, 1815
FaqI GGGAC 3 cut(s) 730, 955, 1207
FatI CATG 5 cut(s) 295, 508, 585, 799, 1737
Fnu4HI GCNGC 5 cut(s) 965, 986, 1323, 1540, 1576
FokI GGATG 2 cut(s) 764, 1058
Fsp4HI GCNGC 5 cut(s) 965, 986, 1323, 1540, 1576
FspBI CTAG 7 cut(s) 132, 465, 477, 957, 969, 1568, 1631
GlaI GCGC 1 cut(s) 1509
GluI GCNGC 5 cut(s) 965, 986, 1323, 1540, 1576
GsaI CCCAGC 1 cut(s) 1711
GsuI CTGGAG 1 cut(s) 654
HaeIII GGCC 5 cut(s) 821, 985, 1001, 1163, 1838
HapII CCGG 3 cut(s) 749, 1265, 1367
HhaI GCGC 1 cut(s) 1510
Hin1II CATG 5 cut(s) 299, 512, 589, 803, 1741
Hin6I GCGC 1 cut(s) 1508
HinP1I GCGC 1 cut(s) 1508
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 5 cut(s) 260, 887, 908, 1109, 1438
HpaII CCGG 3 cut(s) 749, 1265, 1367
HphI GGTGA 6 cut(s) 463, 648, 828, 944, 1024, 1077
Hpy166II GTNNAC 4 cut(s) 689, 869, 1193, 1751
Hpy188I TCNGA 6 cut(s) 69, 87, 1045, 1153, 1356, 1768
Hpy188III TCNNGA 6 cut(s) 362, 497, 1138, 1291, 1470, 1499
Hpy8I GTNNAC 4 cut(s) 689, 869, 1193, 1751
HpyAV CCTTC 7 cut(s) 442, 571, 640, 780, 919, 1507, 1798
HpyCH4III ACNGT 2 cut(s) 809, 1209
HpyCH4IV ACGT 2 cut(s) 871, 1261
HpyCH4V TGCA 8 cut(s) 593, 799, 1318, 1325, 1425, 1451, 1583, 1751
HpyF10VI GCNNNNNNNGC 3 cut(s) 603, 827, 1657
HpyF3I CTNAG 4 cut(s) 312, 411, 912, 1431
HpySE526I ACGT 2 cut(s) 871, 1261
Hsp92II CATG 5 cut(s) 299, 512, 589, 803, 1741
HspAI GCGC 1 cut(s) 1508
Kzo9I GATC 4 cut(s) 82, 621, 1363, 1768
LguI GCTCTTC 1 cut(s) 228
LmnI GCTCC 2 cut(s) 559, 851
Lsp1109I GCAGC 3 cut(s) 1309, 1526, 1587
LweI GCATC 2 cut(s) 482, 1036
MaeI CTAG 7 cut(s) 132, 465, 477, 957, 969, 1568, 1631
MaeII ACGT 2 cut(s) 871, 1261
MaeIII GTNAC 5 cut(s) 479, 494, 755, 1030, 1252
MalI GATC 4 cut(s) 84, 623, 1365, 1770
MbiI CCGCTC 1 cut(s) 238
MboI GATC 4 cut(s) 82, 621, 1363, 1768
MfeI CAATTG 2 cut(s) 660, 1089
MflI RGATCY 2 cut(s) 1363, 1768
MhlI GDGCHC 2 cut(s) 564, 1753
MluCI AATT 9 cut(s) 21, 41, 184, 202, 660, 765, 1089, 1357, 1526
MlyI GAGTC 2 cut(s) 896, 902
MmeI TCCRAC 2 cut(s) 879, 1005
MseI TTAA 8 cut(s) 39, 51, 171, 323, 357, 1158, 1491, 1833
MslI CAYNNNNRTG 1 cut(s) 1044
MspCI CTTAAG 2 cut(s) 322, 1832
MspI CCGG 3 cut(s) 749, 1265, 1367
MspR9I CCNGG 2 cut(s) 1266, 1303
MunI CAATTG 2 cut(s) 660, 1089
Mva1269I GAATGC 2 cut(s) 595, 1320
MvaI CCWGG 1 cut(s) 1303
MwoI GCNNNNNNNGC 3 cut(s) 603, 827, 1657
NciI CCSGG 1 cut(s) 1266
NcoI CCATGG 1 cut(s) 1737
NdeII GATC 4 cut(s) 82, 621, 1363, 1768
NlaIII CATG 5 cut(s) 299, 512, 589, 803, 1741
NlaIV GGNNCC 5 cut(s) 150, 1164, 1339, 1365, 1652
NmuCI GTSAC 3 cut(s) 479, 494, 1030
NspI RCATGY 1 cut(s) 512
PciI ACATGT 1 cut(s) 508
PciSI GCTCTTC 1 cut(s) 228
PctI GAATGC 2 cut(s) 595, 1320
PfeI GAWTC 3 cut(s) 260, 1109, 1438
PflMI CCANNNNNTGG 1 cut(s) 1743
PkrI GCNGC 5 cut(s) 966, 987, 1324, 1541, 1577
PleI GAGTC 2 cut(s) 895, 902
PpsI GAGTC 2 cut(s) 895, 902
PscI ACATGT 1 cut(s) 508
Psp6I CCWGG 1 cut(s) 1301
PspFI CCCAGC 1 cut(s) 1707
PspGI CCWGG 1 cut(s) 1301
PspN4I GGNNCC 5 cut(s) 150, 1164, 1339, 1365, 1652
PspPI GGNCC 3 cut(s) 820, 1000, 1162
PsuI RGATCY 2 cut(s) 1363, 1768
RseI CAYNNNNRTG 1 cut(s) 1044
SapI GCTCTTC 1 cut(s) 228
SaqAI TTAA 8 cut(s) 39, 51, 171, 323, 357, 1158, 1491, 1833
SatI GCNGC 5 cut(s) 965, 986, 1323, 1540, 1576
Sau3AI GATC 4 cut(s) 82, 621, 1363, 1768
Sau96I GGNCC 3 cut(s) 820, 1000, 1162
SchI GAGTC 2 cut(s) 896, 902
ScrFI CCNGG 2 cut(s) 1266, 1303
SduI GDGCHC 2 cut(s) 564, 1753
SfaNI GCATC 2 cut(s) 482, 1036
SmiMI CAYNNNNRTG 1 cut(s) 1044
SmlI CTYRAG 4 cut(s) 322, 386, 572, 1832
SmoI CTYRAG 4 cut(s) 322, 386, 572, 1832
SpeI ACTAGT 2 cut(s) 131, 464
Sse9I AATT 9 cut(s) 21, 41, 184, 202, 660, 765, 1089, 1357, 1526
SsiI CCGC 5 cut(s) 238, 518, 965, 986, 1271
SspI AATATT 1 cut(s) 64
SspMI CTAG 7 cut(s) 132, 465, 477, 957, 969, 1568, 1631
StyD4I CCNGG 2 cut(s) 1264, 1301
StyI CCWWGG 2 cut(s) 980, 1737
TaaI ACNGT 2 cut(s) 809, 1209
TaiI ACGT 2 cut(s) 874, 1264
TaqI TCGA 3 cut(s) 675, 855, 1137
TasI AATT 9 cut(s) 21, 41, 184, 202, 660, 765, 1089, 1357, 1526
TauI GCSGC 2 cut(s) 967, 988
TfiI GAWTC 3 cut(s) 260, 1109, 1438
Tru1I TTAA 8 cut(s) 39, 51, 171, 323, 357, 1158, 1491, 1833
Tru9I TTAA 8 cut(s) 39, 51, 171, 323, 357, 1158, 1491, 1833
TscAI CASTG 1 cut(s) 1585
TseFI GTSAC 3 cut(s) 479, 494, 1030
TseI GCWGC 3 cut(s) 1322, 1539, 1575
Tsp45I GTSAC 3 cut(s) 479, 494, 1030
TspRI CASTG 1 cut(s) 1585
Van91I CCANNNNNTGG 1 cut(s) 1743
Vha464I CTTAAG 2 cut(s) 322, 1832
VneI GTGCAC 1 cut(s) 1749
XapI RAATTY 4 cut(s) 41, 184, 202, 1357
XceI RCATGY 1 cut(s) 512
XcmI CCANNNNNNNNNTGG 2 cut(s) 1010, 1232
XspI CTAG 7 cut(s) 132, 465, 477, 957, 969, 1568, 1631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.