Rh6CG467900

BAH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0004827
Physical Location & Seq
Reverse (-)
63955590 .. 63971594
16005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG467900.1

Sequence Viewer

Length: 1779 bp
ATGTTGAAGGCGATGGAGAGGTTCAAGGTGACGGCGAGGTTCCGGCAGAGGGCAGAGCCCGTCTCGGAGATGTCCGAACACACACAGAAGCAGGTGATTTTGGGGAGGCGAGAGTTGCCGTCACTGCTTTCCGATCAAAAACAGCAACTGTTGAGTGTTAGTCAGGTTGTGGAGAGGCCTGCTCGTAGAATGGTAAAGGTGGAAGAGACTGAAGGTCCTGAATTTAAGTGGGGAATGAAGAAAGCAATTGGTGGAAAAAACAAAGCCACACAGTTCTATAAATCTTTTACTTTCGACGGGGAGCAGTATGACCTTTATGACTGTGTTTATCTTTACAAGGAAGGTGAGCCAGAGCCTGAGATTGGTAAGATAATAAAAATGTGGGAAACTCCACAAAGGATAAGGAGAGTGAAAATCCTATGGTTTTTCCGTCCTTGTGAGATTATCAATTTTCTCGGTGATGAAGAGATACTCGAGAACGAGTTGTTTTTGGCATCTGGTGTTGGTACAGGCCTTTATAATCTGAATCCAGTGGAAGCCATTGCTGGAAAATGCAATGTTCTGTGCATTTCAAAGGACAAGGAAGATCCTCAACCTTCAGATGAGGAGCTTCAAAAGGCCGATTTTGTATTTTACAGAACCTTTGATGTTTCGCTGCAGAAAATCATGGATAAGATAGAGGGGAAAATTGCTGATGTTGATGTTAAATTCCTTTTTAACAGAATGAATATTCAGAAGCCTGCTGGCGATCTGAATGTTGATTTAGGAAAAAACAAAGTTTGTGGTAATGACACAACAAGTAATGAAACAATGGTTCCATCAAAGCAAAACTCGTTTAAAGAACACATAAATTTAGAGACAATGGGAAATTCTTTTGACAAGCATAAACTTTGTGTGGAAAAGCGGATATCTGCCGTAGGTTTAGAATCAAGTGAGATGGATAAAACTGATGAAAGACAACAAGATATGTCAAGTCCTAAGACTATCTTAAGTTGTAAAGGTAAAAGTAGGGAGGAAGAGGTTAATCTTGACAACGTTCTTCCAAGAAAGCTTGAGGTGGAAGAAACAATCTCTACTAAGGAGGTTGGTGATTTGGACAATAGACCAACTAAGAAGGTGAAGCTTGATCCTAGTAAAGCATCTAGTGACGATAGAAATAGTCACGAGCAAAGACATGTTGAGGTGGAAGAAAATAGCAATAATAGAAAGAGTAATGCTATATTGGAGCACACACAACTTGAGAAGGCAAACATGAATGCAAGCCGAAGTAGCGAGCATAAACACAAGATCAATGCTAATGGGAGTTATATGAAGGATTTATCACCAATTGCTTCTCCAGTCGATGAAAGATGTAAACGCAAAGGTGTAGAGGATACTATTGGGACAAATAAAAGCCATACCAAGAAGATGAAGTCCAAAAGTAACACAACGATTCCTTCCAATGACAAGTTGCCCAAATCATTGCATGGAGACGGTAAAAGTAAGGCCCAAAAGGCTTTATCACCAAGTAGCTCCACCATCGATGATAAGTGTAAACATAAAGATGGAGGGGAGTCTTTAGTGGTGGACAAAGACTCCAAGAAGAAGATGAAGGTTGGCGATAAGGCGACAAGTCTTTCCACTAGCAAGCCGCCTAGACCAACCCCAAGGCCGCCTAAAAATAAGGCCCAAAAGTTTGATGGTCAAGTGTTGGAAGTCACCCAACATTCGGATGCGGTAAGCAATAACATTCCTCCTTTTAATTTTAGTTTAATGGTCCTCTCATGGTCCTCTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH RRM_1

Protein Analysis

592

Amino Acids

66.97

Weight (kDa)

8.79

Isoelectric Point (pI)

46.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 103 - 217 2.7e-11 BAH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 519
AarI CACCTGC 1 cut(s) 82
Acc36I ACCTGC 1 cut(s) 82
AciI CCGC 4 cut(s) 904, 1631, 1652, 1715
AclI AACGTT 1 cut(s) 1035
AclWI GGATC 2 cut(s) 581, 1121
AcsI RAATTY 4 cut(s) 221, 707, 850, 868
AcuI CTGAAG 2 cut(s) 231, 582
AfaI GTAC 1 cut(s) 508
AfiI CCNNNNNNNGG 3 cut(s) 49, 362, 1708
AflII CTTAAG 1 cut(s) 988
AflIII ACRYGT 1 cut(s) 1174
AgsI TTSAA 4 cut(s) 7, 25, 573, 614
AhdI GACNNNNNGTC 1 cut(s) 213
AluBI AGCT 4 cut(s) 610, 1051, 1123, 1512
AluI AGCT 4 cut(s) 610, 1051, 1123, 1512
Alw21I GWGCWC 1 cut(s) 1230
Alw26I GTCTC 4 cut(s) 67, 200, 851, 1464
AlwI GGATC 2 cut(s) 581, 1121
AlwNI CAGNNNCTG 2 cut(s) 148, 356
Ama87I CYCGRG 1 cut(s) 473
AoxI GGCC 6 cut(s) 176, 511, 618, 1485, 1649, 1665
ApeKI GCWGC 1 cut(s) 655
ApoI RAATTY 4 cut(s) 221, 707, 850, 868
AspS9I GGNCC 5 cut(s) 215, 1486, 1666, 1756, 1767
AsuHPI GGTGA 9 cut(s) 40, 106, 356, 470, 1100, 1129, 1314, 1494, 1690
AvaI CYCGRG 1 cut(s) 473
AvaII GGWCC 3 cut(s) 215, 1756, 1767
BanII GRGCYC 1 cut(s) 60
BauI CACGAG 1 cut(s) 1163
Bbv12I GWGCWC 1 cut(s) 1230
BbvI GCAGC 1 cut(s) 642
BccI CCATC 6 cut(s) 7, 826, 931, 1526, 1538, 1673
BceAI ACGGC 3 cut(s) 48, 103, 899
BciVI GTATCC 1 cut(s) 1366
BcoDI GTCTC 4 cut(s) 67, 200, 851, 1464
BfaI CTAG 4 cut(s) 1131, 1143, 1623, 1635
BfmI CTRYAG 1 cut(s) 656
BfrI CTTAAG 1 cut(s) 988
BfuAI ACCTGC 1 cut(s) 82
BfuI GTATCC 1 cut(s) 1366
BglI GCCNNNNNGGC 1 cut(s) 1493
BisI GCNGC 3 cut(s) 656, 1631, 1652
BlsI GCNGC 3 cut(s) 657, 1632, 1653
Bme18I GGWCC 3 cut(s) 215, 1756, 1767
BmeRI GACNNNNNGTC 1 cut(s) 213
BmeT110I CYCGRG 1 cut(s) 473
BmgT120I GGNCC 5 cut(s) 215, 1486, 1666, 1756, 1767
BmiI GGNNCC 2 cut(s) 41, 816
BmsI GCATC 3 cut(s) 503, 1148, 1702
BplI GAGNNNNNCTC 4 cut(s) 47, 79, 166, 198
BpmI CTGGAG 1 cut(s) 1320
BpuEI CTTGAG 2 cut(s) 1073, 1259
Bsa29I ATCGAT 1 cut(s) 1521
BsaJI CCNNGG 1 cut(s) 1646
BsaXI ACNNNNNCTCC 2 cut(s) 1559, 1589
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 362, 1708
Bse1I ACTGG 2 cut(s) 530, 1337
Bse3DI GCAATG 3 cut(s) 540, 562, 1460
BseCI ATCGAT 1 cut(s) 1521
BseDI CCNNGG 1 cut(s) 1646
BseGI GGATG 1 cut(s) 1717
BseLI CCNNNNNNNGG 3 cut(s) 49, 362, 1708
BseMI GCAATG 3 cut(s) 540, 562, 1460
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 2 cut(s) 530, 1337
BseRI GAGGAG 1 cut(s) 620
BseXI GCAGC 1 cut(s) 642
BshFI GGCC 6 cut(s) 178, 513, 620, 1487, 1651, 1667
BshVI ATCGAT 1 cut(s) 1521
BsiHKAI GWGCWC 1 cut(s) 1230
BsiHKCI CYCGRG 1 cut(s) 473
BsiSI CCGG 1 cut(s) 43
BslFI GGGAC 1 cut(s) 1396
BslI CCNNNNNNNGG 3 cut(s) 49, 362, 1708
BsmAI GTCTC 4 cut(s) 67, 200, 851, 1464
BsmBI CGTCTC 2 cut(s) 67, 1464
BsmFI GGGAC 1 cut(s) 1396
BsmI GAATGC 1 cut(s) 1261
BsnI GGCC 6 cut(s) 178, 513, 620, 1487, 1651, 1667
BsoBI CYCGRG 1 cut(s) 473
Bsp1286I GDGCHC 2 cut(s) 60, 1230
Bsp143I GATC 5 cut(s) 133, 586, 748, 1126, 1287
BspACI CCGC 4 cut(s) 904, 1631, 1652, 1715
BspANI GGCC 6 cut(s) 178, 513, 620, 1487, 1651, 1667
BspCNI CTCAG 1 cut(s) 349
BspDI ATCGAT 1 cut(s) 1521
BspLI GGNNCC 2 cut(s) 41, 816
BspMAI CTGCAG 1 cut(s) 660
BspMI ACCTGC 1 cut(s) 82
BspPI GGATC 2 cut(s) 581, 1121
BspTI CTTAAG 1 cut(s) 988
BsrDI GCAATG 3 cut(s) 540, 562, 1460
BsrI ACTGG 2 cut(s) 530, 1337
BssECI CCNNGG 1 cut(s) 1646
BssMI GATC 5 cut(s) 133, 586, 748, 1126, 1287
BssSI CACGAG 1 cut(s) 1163
BssT1I CCWWGG 1 cut(s) 1646
Bst2BI CACGAG 1 cut(s) 1163
Bst4CI ACNGT 4 cut(s) 150, 273, 323, 1475
Bst6I CTCTTC 3 cut(s) 198, 459, 1011
BstAFI CTTAAG 1 cut(s) 988
BstC8I GCNNGC 6 cut(s) 180, 741, 745, 1261, 1274, 1628
BstDEI CTNAG 4 cut(s) 357, 978, 1077, 1110
BstF5I GGATG 1 cut(s) 1717
BstKTI GATC 5 cut(s) 136, 589, 751, 1129, 1290
BstMAI GTCTC 4 cut(s) 67, 200, 851, 1464
BstMBI GATC 5 cut(s) 133, 586, 748, 1126, 1287
BstMWI GCNNNNNNNGC 4 cut(s) 115, 124, 1269, 1493
BstNSI RCATGY 1 cut(s) 1178
BstSFI CTRYAG 1 cut(s) 656
BstV1I GCAGC 1 cut(s) 642
BstX2I RGATCY 1 cut(s) 586
BstYI RGATCY 1 cut(s) 586
Bsu15I ATCGAT 1 cut(s) 1521
BsuI GTATCC 1 cut(s) 1366
BsuRI GGCC 6 cut(s) 178, 513, 620, 1487, 1651, 1667
BsuTUI ATCGAT 1 cut(s) 1521
BtgZI GCGATG 1 cut(s) 26
BtsCI GGATG 1 cut(s) 1717
BtsI GCAGTG 1 cut(s) 122
BtsIMutI CAGTG 2 cut(s) 122, 537
BveI ACCTGC 1 cut(s) 82
Cac8I GCNNGC 6 cut(s) 180, 741, 745, 1261, 1274, 1628
CaiI CAGNNNCTG 2 cut(s) 148, 356
Cfr13I GGNCC 5 cut(s) 215, 1486, 1666, 1756, 1767
ClaI ATCGAT 1 cut(s) 1521
Csp6I GTAC 1 cut(s) 507
CspCI CAANNNNNGTGG 2 cut(s) 763, 798
CviAII CATG 5 cut(s) 667, 1175, 1252, 1466, 1764
CviQI GTAC 1 cut(s) 507
DdeI CTNAG 4 cut(s) 357, 978, 1077, 1110
DpnI GATC 5 cut(s) 135, 588, 750, 1128, 1289
DpnII GATC 5 cut(s) 133, 586, 748, 1126, 1287
DraI TTTAAA 1 cut(s) 838
DriI GACNNNNNGTC 1 cut(s) 213
Eam1104I CTCTTC 3 cut(s) 198, 459, 1011
Eam1105I GACNNNNNGTC 1 cut(s) 213
EarI CTCTTC 3 cut(s) 198, 459, 1011
Eco130I CCWWGG 1 cut(s) 1646
Eco147I AGGCCT 2 cut(s) 178, 513
Eco24I GRGCYC 1 cut(s) 60
Eco32I GATATC 1 cut(s) 909
Eco47I GGWCC 3 cut(s) 215, 1756, 1767
Eco57I CTGAAG 2 cut(s) 231, 582
Eco88I CYCGRG 1 cut(s) 473
EcoO109I RGGNCCY 1 cut(s) 215
EcoRV GATATC 1 cut(s) 909
EcoT14I CCWWGG 1 cut(s) 1646
EcoT38I GRGCYC 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 1646
Esp3I CGTCTC 2 cut(s) 67, 1464
FaeI CATG 5 cut(s) 670, 1178, 1255, 1469, 1767
FalI AAGNNNNNCTT 2 cut(s) 971, 1003
FaqI GGGAC 1 cut(s) 1396
FatI CATG 5 cut(s) 666, 1174, 1251, 1465, 1763
Fnu4HI GCNGC 3 cut(s) 656, 1631, 1652
FokI GGATG 1 cut(s) 1724
FriOI GRGCYC 1 cut(s) 60
Fsp4HI GCNGC 3 cut(s) 656, 1631, 1652
FspBI CTAG 4 cut(s) 1131, 1143, 1623, 1635
GluI GCNGC 3 cut(s) 656, 1631, 1652
GsuI CTGGAG 1 cut(s) 1320
HaeIII GGCC 6 cut(s) 178, 513, 620, 1487, 1651, 1667
HapII CCGG 1 cut(s) 43
Hin1II CATG 5 cut(s) 670, 1178, 1255, 1469, 1767
HindIII AAGCTT 2 cut(s) 1049, 1121
HinfI GANTC 5 cut(s) 526, 926, 1432, 1553, 1574
HpaII CCGG 1 cut(s) 43
HphI GGTGA 9 cut(s) 40, 106, 356, 470, 1100, 1129, 1314, 1494, 1690
Hpy166II GTNNAC 3 cut(s) 1355, 1535, 1567
Hpy188I TCNGA 8 cut(s) 67, 76, 133, 525, 601, 735, 753, 1711
Hpy188III TCNNGA 4 cut(s) 218, 475, 1028, 1163
Hpy8I GTNNAC 3 cut(s) 1355, 1535, 1567
Hpy99I CGWCG 1 cut(s) 299
HpyAV CCTTC 8 cut(s) 206, 335, 606, 1108, 1237, 1306, 1446, 1585
HpyCH4III ACNGT 4 cut(s) 150, 273, 323, 1475
HpyCH4IV ACGT 1 cut(s) 1035
HpyCH4V TGCA 5 cut(s) 555, 567, 658, 1259, 1465
HpyF10VI GCNNNNNNNGC 4 cut(s) 115, 124, 1269, 1493
HpyF3I CTNAG 4 cut(s) 357, 978, 1077, 1110
HpySE526I ACGT 1 cut(s) 1035
Hsp92II CATG 5 cut(s) 670, 1178, 1255, 1469, 1767
Kzo9I GATC 5 cut(s) 133, 586, 748, 1126, 1287
LmnI GCTCC 4 cut(s) 301, 607, 1225, 1517
Lsp1109I GCAGC 1 cut(s) 642
LweI GCATC 3 cut(s) 503, 1148, 1702
MaeI CTAG 4 cut(s) 1131, 1143, 1623, 1635
MaeII ACGT 1 cut(s) 1035
MaeIII GTNAC 6 cut(s) 28, 120, 1145, 1160, 1421, 1696
MalI GATC 5 cut(s) 135, 588, 750, 1128, 1289
MboI GATC 5 cut(s) 133, 586, 748, 1126, 1287
MfeI CAATTG 2 cut(s) 246, 1326
MflI RGATCY 1 cut(s) 586
MhlI GDGCHC 2 cut(s) 60, 1230
MluCI AATT 9 cut(s) 221, 246, 448, 687, 707, 850, 868, 1326, 1741
MlyI GAGTC 2 cut(s) 1562, 1568
MmeI TCCRAC 1 cut(s) 1671
MseI TTAA 9 cut(s) 225, 705, 717, 837, 989, 1023, 1740, 1751, 1777
MslI CAYNNNNRTG 2 cut(s) 1542, 1710
MspCI CTTAAG 1 cut(s) 988
MspI CCGG 1 cut(s) 43
MunI CAATTG 2 cut(s) 246, 1326
Mva1269I GAATGC 1 cut(s) 1261
MwoI GCNNNNNNNGC 4 cut(s) 115, 124, 1269, 1493
NdeII GATC 5 cut(s) 133, 586, 748, 1126, 1287
NlaIII CATG 5 cut(s) 670, 1178, 1255, 1469, 1767
NlaIV GGNNCC 2 cut(s) 41, 816
NmuCI GTSAC 5 cut(s) 28, 120, 1145, 1160, 1696
NspI RCATGY 1 cut(s) 1178
PaeR7I CTCGAG 1 cut(s) 473
PaqCI CACCTGC 1 cut(s) 82
PceI AGGCCT 2 cut(s) 178, 513
PciI ACATGT 1 cut(s) 1174
PctI GAATGC 1 cut(s) 1261
PfeI GAWTC 3 cut(s) 526, 926, 1432
PkrI GCNGC 3 cut(s) 657, 1632, 1653
PleI GAGTC 2 cut(s) 1561, 1568
PpsI GAGTC 2 cut(s) 1561, 1568
PpuMI RGGWCCY 1 cut(s) 215
PscI ACATGT 1 cut(s) 1174
PsiI TTATAA 1 cut(s) 519
Psp1406I AACGTT 1 cut(s) 1035
Psp5II RGGWCCY 1 cut(s) 215
PspN4I GGNNCC 2 cut(s) 41, 816
PspPI GGNCC 5 cut(s) 215, 1486, 1666, 1756, 1767
PspPPI RGGWCCY 1 cut(s) 215
PstI CTGCAG 1 cut(s) 660
PstNI CAGNNNCTG 2 cut(s) 148, 356
PsuI RGATCY 1 cut(s) 586
RsaI GTAC 1 cut(s) 508
RsaNI GTAC 1 cut(s) 507
RseI CAYNNNNRTG 2 cut(s) 1542, 1710
SaqAI TTAA 9 cut(s) 225, 705, 717, 837, 989, 1023, 1740, 1751, 1777
SatI GCNGC 3 cut(s) 656, 1631, 1652
Sau3AI GATC 5 cut(s) 133, 586, 748, 1126, 1287
Sau96I GGNCC 5 cut(s) 215, 1486, 1666, 1756, 1767
SchI GAGTC 2 cut(s) 1562, 1568
SduI GDGCHC 2 cut(s) 60, 1230
SfaNI GCATC 3 cut(s) 503, 1148, 1702
SfcI CTRYAG 1 cut(s) 656
Sfr274I CTCGAG 1 cut(s) 473
SinI GGWCC 3 cut(s) 215, 1756, 1767
SlaI CTCGAG 1 cut(s) 473
SmiMI CAYNNNNRTG 2 cut(s) 1542, 1710
SmlI CTYRAG 4 cut(s) 473, 988, 1052, 1238
SmoI CTYRAG 4 cut(s) 473, 988, 1052, 1238
Sse9I AATT 9 cut(s) 221, 246, 448, 687, 707, 850, 868, 1326, 1741
SseBI AGGCCT 2 cut(s) 178, 513
SsiI CCGC 4 cut(s) 904, 1631, 1652, 1715
SspI AATATT 1 cut(s) 730
SspMI CTAG 4 cut(s) 1131, 1143, 1623, 1635
StuI AGGCCT 2 cut(s) 178, 513
StyI CCWWGG 1 cut(s) 1646
TaaI ACNGT 4 cut(s) 150, 273, 323, 1475
TaiI ACGT 1 cut(s) 1038
TaqI TCGA 4 cut(s) 294, 474, 1341, 1521
TasI AATT 9 cut(s) 221, 246, 448, 687, 707, 850, 868, 1326, 1741
TauI GCSGC 2 cut(s) 1633, 1654
TfiI GAWTC 3 cut(s) 526, 926, 1432
Tru1I TTAA 9 cut(s) 225, 705, 717, 837, 989, 1023, 1740, 1751, 1777
Tru9I TTAA 9 cut(s) 225, 705, 717, 837, 989, 1023, 1740, 1751, 1777
TscAI CASTG 2 cut(s) 129, 537
TseFI GTSAC 5 cut(s) 28, 120, 1145, 1160, 1696
TseI GCWGC 1 cut(s) 655
Tsp45I GTSAC 5 cut(s) 28, 120, 1145, 1160, 1696
TspGWI ACGGA 1 cut(s) 419
TspRI CASTG 2 cut(s) 129, 537
Vha464I CTTAAG 1 cut(s) 988
VpaK11BI GGWCC 3 cut(s) 215, 1756, 1767
XapI RAATTY 4 cut(s) 221, 707, 850, 868
XceI RCATGY 1 cut(s) 1178
XcmI CCANNNNNNNNNTGG 1 cut(s) 1676
XhoI CTCGAG 1 cut(s) 473
XspI CTAG 4 cut(s) 1131, 1143, 1623, 1635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.