Rh6BG447300

BAH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0004827
Physical Location & Seq
Forward (+)
66272798 .. 66281115
8318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG447300.1

Sequence Viewer

Length: 2040 bp
ATGATTTTGGGGAGGCGAGAGTTGCCGTCACTGCTTTCCGATCAAAAACAGCAACTGTTGAGTGTTAGTCAGGTTGTGGAGAGGCCTGCTCGTAGAATGGTAAAGGTGGAAGAGACTGAAGGTCCTGAATTTAAATGGGGAATGAAGAAAGCAATTGGTGGAAAAAACAAAGCCACACAGTTCTATAAATCTTTTACTTTCGACGGGGAGCAGTATGACCTTTATGACTGTGTTTATCTTTACAAGGAAGGTGAGCCAGAGCCTGAGATTGGTAAGATAATAAAAATGTGGGAAACTCCACAAAGGATAAGGAGAGTGAAAATCCTATGGTTTTTCCGTCCTTGTGAGATTATCAATTTTCTCGGTGATGAAGAGATACTCGAGAACGAGTTGTTTTTGGCATCTGGTGTTGGTACAGGCCTTTATAATCTGAATCCAGTGGAAGCCATTGCTGGAAAATGCAATGTTCTGTGCATTTCAAAGGACAAGGAAGATCCTCAACCTTCAGATGAGGAGCTTCAAAAGGCCGATTTTGTATTTTACAGAACCTTTGATGTTTCGCTGCAGAAAATCATGGATAAGATAGAGGGGAAAATTGCTGATGTTGATGTTAAATTCCTTTTTAACAGAATGAATATTCAGAAGCCTGCTGGCGATCTGAATGTTGATTTAGGAAAAAACAAAGTTTGTGGTAATGACACAACAAGTAATGAAACAATGGTTCCATCAAAGCAAAACTCATTTAAAGAACACATAAATTTAGAGACAATGGGAAATTCTTTTGACAAGCATAAACTTTGTGTGGAAAAGCGGATATCTGCCGTAGGTTTAGAATCAAGTGAGATGGATAAAACTGATGAAAGACAACAAGATATGTCAAGTCCTAAGACTATCTTAAGTTGTAAAGGTAAAAGTAGGGAGGAAGAGGTTAATCTTGACAACGTTCTTCCAAGAAAGCTTGAGGTGGAAGAAACAATCTCTACTAAGGAGGTTGGTGATTTGGACAATAGACCAACTAAGAAGGTGAAGCTTGATACTAGTAAAGCATCTACTGACGATAGAAATAGTCACGAGCAAAGACATGTTGAGGTGGAAGAAAATAGCAATAATAGAAAGAGTAATGCTATATTGGAGCACACACAACTTGAGAAGGCAAACATGAATGCAAGCCGAAGTAGCGAGCATAAACACAAGATCAATGCTAATGGGAGTTATATGAAGGATTTATCACCAATTGCTTCTCCAGTCGATGAAAGATGTAAACGCAAAGGTGTAGAGGATACTATTGGGACAAATAAAAGCCATACCAAGAAGATGAAGTCCGATGGTAACACAACGATTCCTTCCAATGACAAGTTGCCCAAATCATTGCATGGAGACGGTAAAAGTAAGGCCCAAAAGGCTTTATCACCAAGTAGCTCCACCATCGATGATAAGTGTAAACATAAAGATGGAGGGGAGTCTTTAGTGGTGGACAAAGACTCCAAGAAGAAGATGAAGGTTGGCGATAAGGCGACAAGTCTTTCCACTAGCAAGCCGCCTAGACCAACCCCAAGGCCGCCTAAAAATAAGGCCCAAAAGTTTGATGGTCAAGTGTTGGAAGTCACCCAACATTCGGATGCGAGTAATGTTGATGGGAATGATAATAAGACTTCATCACCAATTGCTTTTGGATTTGATGATTCGCTTGGGAAACACAAAGCCCCTTTCGAGAAGATGAAGTCCGATGTTAAGGCCCCAAGACTTTCCAATAGGGAGTTGCGTGAACAATCTTCCACACAGTCGCAAAATAAGTCCCAAAAGTTAGATGGTCAAGTTGTGGAAGTTACTCAACGTCCGGGTGCGGTAAGTGATAACATTCGTATGCCTTTAATTATTCCAATGCTTCTTATTGACAATGTTTCTAATGGTTGGTGCGACCTTTCACACATGAACAATATTATTAGCTCATGGTGGTTGTTGGCAAACCAACATTTTCGGTCTTACCAATGCAATAAAAATGTTTTAGTGTACCAAGTATCAATGTCAATCTATTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH RRM_1

Protein Analysis

679

Amino Acids

76.54

Weight (kDa)

8.46

Isoelectric Point (pI)

46.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 72 - 186 3.3e-11 BAH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 426
AciI CCGC 4 cut(s) 811, 1538, 1559, 1844
AclI AACGTT 1 cut(s) 942
AclWI GGATC 1 cut(s) 488
AcsI RAATTY 4 cut(s) 128, 614, 757, 775
AcuI CTGAAG 2 cut(s) 138, 489
AfaI GTAC 2 cut(s) 415, 2012
AfiI CCNNNNNNNGG 2 cut(s) 269, 1615
AflII CTTAAG 1 cut(s) 895
AflIII ACRYGT 1 cut(s) 1081
AgsI TTSAA 2 cut(s) 480, 521
AhdI GACNNNNNGTC 1 cut(s) 120
AhlI ACTAGT 1 cut(s) 1037
AluBI AGCT 5 cut(s) 517, 958, 1030, 1419, 1947
AluI AGCT 5 cut(s) 517, 958, 1030, 1419, 1947
Alw21I GWGCWC 1 cut(s) 1137
Alw26I GTCTC 3 cut(s) 107, 758, 1371
AlwI GGATC 1 cut(s) 488
AlwNI CAGNNNCTG 2 cut(s) 55, 263
Ama87I CYCGRG 1 cut(s) 380
AoxI GGCC 7 cut(s) 83, 418, 525, 1392, 1556, 1572, 1734
ApeKI GCWGC 1 cut(s) 562
ApoI RAATTY 4 cut(s) 128, 614, 757, 775
AspS9I GGNCC 4 cut(s) 122, 1393, 1573, 1735
AsuC2I CCSGG 1 cut(s) 1839
AsuHPI GGTGA 8 cut(s) 263, 377, 1007, 1036, 1221, 1401, 1597, 1650
AvaI CYCGRG 1 cut(s) 380
AvaII GGWCC 1 cut(s) 122
BauI CACGAG 1 cut(s) 1070
Bbv12I GWGCWC 1 cut(s) 1137
BbvI GCAGC 1 cut(s) 549
BccI CCATC 8 cut(s) 733, 838, 1319, 1433, 1445, 1580, 1628, 1802
BceAI ACGGC 2 cut(s) 10, 806
BciVI GTATCC 1 cut(s) 1273
BcnI CCSGG 1 cut(s) 1839
BcoDI GTCTC 3 cut(s) 107, 758, 1371
BcuI ACTAGT 1 cut(s) 1037
BfaI CTAG 3 cut(s) 1038, 1530, 1542
BfmI CTRYAG 1 cut(s) 563
BfrI CTTAAG 1 cut(s) 895
BfuI GTATCC 1 cut(s) 1273
BglI GCCNNNNNGGC 1 cut(s) 1400
BisI GCNGC 3 cut(s) 563, 1538, 1559
BlsI GCNGC 3 cut(s) 564, 1539, 1560
Bme1390I CCNGG 1 cut(s) 1839
Bme18I GGWCC 1 cut(s) 122
BmeRI GACNNNNNGTC 1 cut(s) 120
BmeT110I CYCGRG 1 cut(s) 380
BmgT120I GGNCC 4 cut(s) 122, 1393, 1573, 1735
BmiI GGNNCC 2 cut(s) 723, 1737
BmrFI CCNGG 1 cut(s) 1839
BmsI GCATC 3 cut(s) 410, 1055, 1609
BplI GAGNNNNNCTC 2 cut(s) 73, 105
BpmI CTGGAG 1 cut(s) 1227
BpuEI CTTGAG 2 cut(s) 980, 1166
BpuMI CCSGG 1 cut(s) 1839
Bsa29I ATCGAT 1 cut(s) 1428
BsaJI CCNNGG 1 cut(s) 1553
BsaXI ACNNNNNCTCC 2 cut(s) 1466, 1496
Bsc4I CCNNNNNNNGG 2 cut(s) 269, 1615
Bse1I ACTGG 2 cut(s) 437, 1244
Bse3DI GCAATG 3 cut(s) 447, 469, 1367
BseCI ATCGAT 1 cut(s) 1428
BseDI CCNNGG 1 cut(s) 1553
BseGI GGATG 1 cut(s) 1624
BseLI CCNNNNNNNGG 2 cut(s) 269, 1615
BseMI GCAATG 3 cut(s) 447, 469, 1367
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 2 cut(s) 437, 1244
BseRI GAGGAG 1 cut(s) 527
BseXI GCAGC 1 cut(s) 549
BshFI GGCC 7 cut(s) 85, 420, 527, 1394, 1558, 1574, 1736
BshVI ATCGAT 1 cut(s) 1428
BsiHKAI GWGCWC 1 cut(s) 1137
BsiHKCI CYCGRG 1 cut(s) 380
BsiSI CCGG 1 cut(s) 1838
BslFI GGGAC 2 cut(s) 1303, 1780
BslI CCNNNNNNNGG 2 cut(s) 269, 1615
BsmAI GTCTC 3 cut(s) 107, 758, 1371
BsmBI CGTCTC 1 cut(s) 1371
BsmFI GGGAC 2 cut(s) 1303, 1780
BsmI GAATGC 1 cut(s) 1168
BsnI GGCC 7 cut(s) 85, 420, 527, 1394, 1558, 1574, 1736
BsoBI CYCGRG 1 cut(s) 380
Bsp1286I GDGCHC 1 cut(s) 1137
Bsp143I GATC 4 cut(s) 40, 493, 655, 1194
BspACI CCGC 4 cut(s) 811, 1538, 1559, 1844
BspANI GGCC 7 cut(s) 85, 420, 527, 1394, 1558, 1574, 1736
BspCNI CTCAG 1 cut(s) 256
BspDI ATCGAT 1 cut(s) 1428
BspLI GGNNCC 2 cut(s) 723, 1737
BspMAI CTGCAG 1 cut(s) 567
BspPI GGATC 1 cut(s) 488
BspTI CTTAAG 1 cut(s) 895
BsrDI GCAATG 3 cut(s) 447, 469, 1367
BsrI ACTGG 2 cut(s) 437, 1244
BssECI CCNNGG 1 cut(s) 1553
BssMI GATC 4 cut(s) 40, 493, 655, 1194
BssSI CACGAG 1 cut(s) 1070
BssT1I CCWWGG 1 cut(s) 1553
Bst2BI CACGAG 1 cut(s) 1070
Bst4CI ACNGT 5 cut(s) 57, 180, 230, 1382, 1782
Bst6I CTCTTC 3 cut(s) 105, 366, 918
BstAFI CTTAAG 1 cut(s) 895
BstC8I GCNNGC 6 cut(s) 87, 648, 652, 1168, 1181, 1535
BstDEI CTNAG 4 cut(s) 264, 885, 984, 1017
BstF5I GGATG 1 cut(s) 1624
BstKTI GATC 4 cut(s) 43, 496, 658, 1197
BstMAI GTCTC 3 cut(s) 107, 758, 1371
BstMBI GATC 4 cut(s) 40, 493, 655, 1194
BstMWI GCNNNNNNNGC 4 cut(s) 22, 31, 1176, 1400
BstNSI RCATGY 1 cut(s) 1085
BstSCI CCNGG 1 cut(s) 1837
BstSFI CTRYAG 1 cut(s) 563
BstV1I GCAGC 1 cut(s) 549
BstX2I RGATCY 1 cut(s) 493
BstYI RGATCY 1 cut(s) 493
Bsu15I ATCGAT 1 cut(s) 1428
BsuI GTATCC 1 cut(s) 1273
BsuRI GGCC 7 cut(s) 85, 420, 527, 1394, 1558, 1574, 1736
BsuTUI ATCGAT 1 cut(s) 1428
BtsCI GGATG 1 cut(s) 1624
BtsI GCAGTG 1 cut(s) 29
BtsIMutI CAGTG 2 cut(s) 29, 444
Cac8I GCNNGC 6 cut(s) 87, 648, 652, 1168, 1181, 1535
CaiI CAGNNNCTG 2 cut(s) 55, 263
Cfr13I GGNCC 4 cut(s) 122, 1393, 1573, 1735
ClaI ATCGAT 1 cut(s) 1428
Csp6I GTAC 2 cut(s) 414, 2011
CspCI CAANNNNNGTGG 2 cut(s) 670, 705
CviAII CATG 6 cut(s) 574, 1082, 1159, 1373, 1930, 1950
CviQI GTAC 2 cut(s) 414, 2011
DdeI CTNAG 4 cut(s) 264, 885, 984, 1017
DpnI GATC 4 cut(s) 42, 495, 657, 1196
DpnII GATC 4 cut(s) 40, 493, 655, 1194
DraI TTTAAA 2 cut(s) 133, 745
DriI GACNNNNNGTC 1 cut(s) 120
Eam1104I CTCTTC 3 cut(s) 105, 366, 918
Eam1105I GACNNNNNGTC 1 cut(s) 120
EarI CTCTTC 3 cut(s) 105, 366, 918
Eco130I CCWWGG 1 cut(s) 1553
Eco147I AGGCCT 2 cut(s) 85, 420
Eco32I GATATC 1 cut(s) 816
Eco47I GGWCC 1 cut(s) 122
Eco57I CTGAAG 2 cut(s) 138, 489
Eco88I CYCGRG 1 cut(s) 380
EcoO109I RGGNCCY 2 cut(s) 122, 1735
EcoRV GATATC 1 cut(s) 816
EcoT14I CCWWGG 1 cut(s) 1553
ErhI CCWWGG 1 cut(s) 1553
Esp3I CGTCTC 1 cut(s) 1371
FaeI CATG 6 cut(s) 577, 1085, 1162, 1376, 1933, 1953
FalI AAGNNNNNCTT 2 cut(s) 878, 910
FaqI GGGAC 2 cut(s) 1303, 1780
FatI CATG 6 cut(s) 573, 1081, 1158, 1372, 1929, 1949
Fnu4HI GCNGC 3 cut(s) 563, 1538, 1559
FokI GGATG 1 cut(s) 1631
Fsp4HI GCNGC 3 cut(s) 563, 1538, 1559
FspBI CTAG 3 cut(s) 1038, 1530, 1542
GluI GCNGC 3 cut(s) 563, 1538, 1559
GsuI CTGGAG 1 cut(s) 1227
HaeIII GGCC 7 cut(s) 85, 420, 527, 1394, 1558, 1574, 1736
HapII CCGG 1 cut(s) 1838
Hin1II CATG 6 cut(s) 577, 1085, 1162, 1376, 1933, 1953
HindIII AAGCTT 2 cut(s) 956, 1028
HinfI GANTC 6 cut(s) 433, 833, 1339, 1460, 1481, 1682
HpaII CCGG 1 cut(s) 1838
HphI GGTGA 8 cut(s) 263, 377, 1007, 1036, 1221, 1401, 1597, 1650
Hpy166II GTNNAC 5 cut(s) 1262, 1442, 1474, 1766, 2011
Hpy188I TCNGA 8 cut(s) 40, 432, 508, 642, 660, 1324, 1618, 1726
Hpy188III TCNNGA 5 cut(s) 125, 382, 935, 1070, 1711
Hpy8I GTNNAC 5 cut(s) 1262, 1442, 1474, 1766, 2011
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 8 cut(s) 113, 242, 513, 1015, 1144, 1213, 1353, 1492
HpyCH4III ACNGT 5 cut(s) 57, 180, 230, 1382, 1782
HpyCH4IV ACGT 2 cut(s) 942, 1834
HpyCH4V TGCA 6 cut(s) 462, 474, 565, 1166, 1372, 1992
HpyF10VI GCNNNNNNNGC 4 cut(s) 22, 31, 1176, 1400
HpyF3I CTNAG 4 cut(s) 264, 885, 984, 1017
HpySE526I ACGT 2 cut(s) 942, 1834
Hsp92II CATG 6 cut(s) 577, 1085, 1162, 1376, 1933, 1953
Kzo9I GATC 4 cut(s) 40, 493, 655, 1194
LmnI GCTCC 4 cut(s) 208, 514, 1132, 1424
Lsp1109I GCAGC 1 cut(s) 549
LweI GCATC 3 cut(s) 410, 1055, 1609
MaeI CTAG 3 cut(s) 1038, 1530, 1542
MaeII ACGT 2 cut(s) 942, 1834
MaeIII GTNAC 5 cut(s) 27, 1067, 1328, 1603, 1825
MalI GATC 4 cut(s) 42, 495, 657, 1196
MboI GATC 4 cut(s) 40, 493, 655, 1194
MfeI CAATTG 3 cut(s) 153, 1233, 1662
MflI RGATCY 1 cut(s) 493
MhlI GDGCHC 1 cut(s) 1137
MlyI GAGTC 2 cut(s) 1469, 1475
MmeI TCCRAC 1 cut(s) 1578
MseI TTAA 9 cut(s) 132, 612, 624, 744, 896, 930, 1731, 1871, 2038
MslI CAYNNNNRTG 3 cut(s) 1449, 1617, 1862
MspCI CTTAAG 1 cut(s) 895
MspI CCGG 1 cut(s) 1838
MspR9I CCNGG 1 cut(s) 1839
MunI CAATTG 3 cut(s) 153, 1233, 1662
Mva1269I GAATGC 1 cut(s) 1168
MwoI GCNNNNNNNGC 4 cut(s) 22, 31, 1176, 1400
NciI CCSGG 1 cut(s) 1839
NdeII GATC 4 cut(s) 40, 493, 655, 1194
NlaIII CATG 6 cut(s) 577, 1085, 1162, 1376, 1933, 1953
NlaIV GGNNCC 2 cut(s) 723, 1737
NmuCI GTSAC 3 cut(s) 27, 1067, 1603
NspI RCATGY 1 cut(s) 1085
PaeR7I CTCGAG 1 cut(s) 380
PceI AGGCCT 2 cut(s) 85, 420
PciI ACATGT 1 cut(s) 1081
PctI GAATGC 1 cut(s) 1168
PfeI GAWTC 4 cut(s) 433, 833, 1339, 1682
PkrI GCNGC 3 cut(s) 564, 1539, 1560
PleI GAGTC 2 cut(s) 1468, 1475
PpsI GAGTC 2 cut(s) 1468, 1475
PpuMI RGGWCCY 1 cut(s) 122
PscI ACATGT 1 cut(s) 1081
PsiI TTATAA 1 cut(s) 426
Psp1406I AACGTT 1 cut(s) 942
Psp5II RGGWCCY 1 cut(s) 122
PspN4I GGNNCC 2 cut(s) 723, 1737
PspPI GGNCC 4 cut(s) 122, 1393, 1573, 1735
PspPPI RGGWCCY 1 cut(s) 122
PstI CTGCAG 1 cut(s) 567
PstNI CAGNNNCTG 2 cut(s) 55, 263
PsuI RGATCY 1 cut(s) 493
RsaI GTAC 2 cut(s) 415, 2012
RsaNI GTAC 2 cut(s) 414, 2011
RseI CAYNNNNRTG 3 cut(s) 1449, 1617, 1862
SaqAI TTAA 9 cut(s) 132, 612, 624, 744, 896, 930, 1731, 1871, 2038
SatI GCNGC 3 cut(s) 563, 1538, 1559
Sau3AI GATC 4 cut(s) 40, 493, 655, 1194
Sau96I GGNCC 4 cut(s) 122, 1393, 1573, 1735
SchI GAGTC 2 cut(s) 1469, 1475
ScrFI CCNGG 1 cut(s) 1839
SduI GDGCHC 1 cut(s) 1137
SfaNI GCATC 3 cut(s) 410, 1055, 1609
SfcI CTRYAG 1 cut(s) 563
Sfr274I CTCGAG 1 cut(s) 380
SinI GGWCC 1 cut(s) 122
SlaI CTCGAG 1 cut(s) 380
SmiI ATTTAAAT 1 cut(s) 133
SmiMI CAYNNNNRTG 3 cut(s) 1449, 1617, 1862
SmlI CTYRAG 4 cut(s) 380, 895, 959, 1145
SmoI CTYRAG 4 cut(s) 380, 895, 959, 1145
SpeI ACTAGT 1 cut(s) 1037
SseBI AGGCCT 2 cut(s) 85, 420
SsiI CCGC 4 cut(s) 811, 1538, 1559, 1844
SspI AATATT 2 cut(s) 637, 1939
SspMI CTAG 3 cut(s) 1038, 1530, 1542
StuI AGGCCT 2 cut(s) 85, 420
StyD4I CCNGG 1 cut(s) 1837
StyI CCWWGG 1 cut(s) 1553
SwaI ATTTAAAT 1 cut(s) 133
TaaI ACNGT 5 cut(s) 57, 180, 230, 1382, 1782
TaiI ACGT 2 cut(s) 945, 1837
TaqI TCGA 5 cut(s) 201, 381, 1248, 1428, 1710
TaqII GACCGA 1 cut(s) 1968
TauI GCSGC 2 cut(s) 1540, 1561
TfiI GAWTC 4 cut(s) 433, 833, 1339, 1682
Tru1I TTAA 9 cut(s) 132, 612, 624, 744, 896, 930, 1731, 1871, 2038
Tru9I TTAA 9 cut(s) 132, 612, 624, 744, 896, 930, 1731, 1871, 2038
TscAI CASTG 2 cut(s) 36, 444
TseFI GTSAC 3 cut(s) 27, 1067, 1603
TseI GCWGC 1 cut(s) 562
Tsp45I GTSAC 3 cut(s) 27, 1067, 1603
TspGWI ACGGA 1 cut(s) 326
TspRI CASTG 2 cut(s) 36, 444
Vha464I CTTAAG 1 cut(s) 895
VpaK11BI GGWCC 1 cut(s) 122
XapI RAATTY 4 cut(s) 128, 614, 757, 775
XceI RCATGY 1 cut(s) 1085
XcmI CCANNNNNNNNNTGG 2 cut(s) 1583, 1805
XhoI CTCGAG 1 cut(s) 380
XspI CTAG 3 cut(s) 1038, 1530, 1542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.