Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0009778

Physical Location & Seq

Genomic Coordinates Reverse (-)

3292857 .. 3300155

Gene Structure 7299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1049400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3753 bp

ATGGCGGAGCCAGCGGCAGAGGCGAAGACATTGCCGGAGGCGGAGAAGAAGAAGGAGCAGAGCCTGCCCTTTTTCCAGCTCTTCTCCTTCGCAGATAAGTACGATTGGCTCCTCATGATCTTCGGAAGCTTGGGCGCCGTCGTGCACGGCTCCTCCATGCCGGTGTTCTTCCTCATGTTCGGGGAAATGGTTAACGGGTTCGGCGAAAACCAAATGAATTTGCAGAAAATGACCGCAGAAGTAGCAAAGTATGCTCTGTACTTTGTGTATCTCGGTCTCATAGTATGCGTAACATCCTACGCAGAGATTGCATGCTGGATGTACACCGGCGAGAGGCAGGTGAGCAGGCTGAGGAAGAAGTATCTGGAGGCCGTGCTGAAACAGGACGTCGGCTTCTTCGACACCGACGCTAGAACTGGAGACATTGTCTTTAGTATCTCAACGGACACTCTTCTGGTCCAAGATGCCATCAGTGAGAAGGTGGGGAACTTCATACACTATCTGTCAACGTTTCTGGCGGGGCTGGTGGTAGGGTTTGTGTCAGCATGGAGGCTGGCGCTGCTGAGTATTGCGGTGATTCCCGGAATCGCTTTTGCCGGCGGCTTATATGCCTACACACTCACCGGCCTGACGTCCAAAAGTCGCCAGTCGTATGCCAATGCAGGGATAATGGCTGATCAGGCCATTGCGCAAGTTCGGACAGTTTATTCATACGTTGGTGAAAGCAAGGCCCTCAATTCGTATTCGGATGCAATACAGAACACCTTGCAGCTTGGTTACAAGGCCGGAATGGCCAAAGGTCTCGGCCTAGGGTGTACCTACGGCATTGCTTGTATGTCATGGGCACTCGTTTTCTGGTACGCTGGTGTGTTTATCCGAAACGGGCAGACTGATGGTGGGAAGGCGTTCACCGCCATTTTCTCCGCCATTGTTGGTGGCATGAGCTTGGGCCAGTCATTTTCGAACCTCGGTGCCTTTAGCAAAGGTAAATCAGCCGGATACAAGTTGATGGAGATAATTAAGCAAAAGCCAACCATAGTTCAAGACCCCTTGGACGGAAAGTGCTTATCGGATGTTAGTGGCAATATCGAATTCAAGGAAGTAACCTTCAGCTACCCTTCGAGACCGGATGTTATTATCTTCCGAGATTTTTCGATCTTCTTTCCAGCCGGAAAGACGGTTGCCGTTGTTGGTGGCAGTGGTTCAGGGAAGAGCACTGTTGTCTCTCTAATCGAAAGGTTCTACGATCCTAACCAGGGGCAGGTTTTGATTGATAGCGTGGACATAAAAACGCTGCAATTGAAATGGTTGCGCGATCAGATTGGGCTGGTAAACCAGGAACCGGCACTCTTTGCAACTACGATACTCGAGAACATTCTCTATGGAAAGCCTGACGCAACAATGGAAGACGTTGAAGTTGCGGCTTCCTCAGCGAACGCTCACAGTTTCATCACCTTGCTTCCAAGCGGATATAACACTCAGGTAGGAGAGCGAGGAGTTCAACTCTCTGGTGGTCAAAAGCAGAGGATTGCAATTGCCAGAGCAATGTTGAAAAACCCGAAGATCCTCCTACTTGACGAAGCAACCAGCGCCCTTGATGCAAGCTCGGAGAGCATTGTTCAAGAAGCTCTAGACCGTCTCATGGTCGGAAGAACAACCGTTGTTGTGGCGCATCGCCTTTCCACCATTAGAAATGTTGATAGCATTGCTGTTATACAACAAGGCCAAGTTGTCGAGACAGGAACACATGAAGAACTGATTGCTAAAGCAGGGGCCTACGCTTCTCTAATTCGATTCCAAGAAATGGTTGGGAACAGAGACTTCAGGAACCCATCTACTCGCTGCTCGCGCTCATCACGTCTAAGCCACTCATTGTCAACGAAGTCTTTAAGCCTTCGGTCTGGCAGCTTAAGGAACCTGAGCTATTCGTACAGTACGGGTGCTGATGGGCGGATAGAGATGATTTCAAATGCTGAAACTGACAGGAAAACTCGAGCTCCTAAGAACTATTTCTTCCGGCTTCTGAAGCTAAACGCTCCCGAATGGCCCTATTCAATCATGGCCGCTATAGGATCAGTACTCTCCGGGTTCATCGGTCCAACATTTGCTATTCTAATGGGCAACATGATTGAGGTTTTCTACTATAAAAACCCCGCCTCAATGGAAAGGAAGACGAAGGAATACGTTTTCATGTACATTGGAGTCGGGCTATACGCTGTGGTTGCGTATTTGATACAGCATTACTTCTTCAGCATCATGGGAGAGAACCTCACTACTAGAGTGAGAAGGATGATGCTTGCAGCAATCTTGAGGAACGAAGTTGGATGGTTCGATGAGGAGGAGCACAACTCCAACCTTCTAACAACTAAATTGGCAACGGATGCTGCTGATGTGAAATCAGCTATTTCTGAGAGGATATCTGTGATATTGCAGAACATGACTTCACTCCTCACTTCATTCATTGTTGCCTTCATAGTGGAATGGAGAGTCTCCCTCCTCATTTTAGCTACCTTCCCACTTCTTGTGCTTTCCAACTATGCTCAGCAACTTTCTTTGAAGGGCTTTGCTGGAGACACAGCCAAAGCTCATGCAAAGACGAGCATGATTGCAGGGGAGGGAGTGAGCAATATTCGGACAGTCGCCGCGTTCAATGCCCAAAACAAGATCCTCTCTCTCTTCTGCCACGAGCTCCGTCTCCCACAGCTGGGAAGCCTCCGCCGCAGCCAAACTGCTGGCGTCCTATTCGGCCTCTCTCAGTTTGCTCTCCATGCATCTGAAGCTCTCATTTTGTGGTATGGTGCCCACCTCGTTAGCAAAGGTGTCTCGACCTTCTCGAAAGTTATTAAGGTTTTCGTTGTCCTTGTTGTAACGGCCAATTCAGTTGCTGAAACCGTTAGCCTTGCCCCGGAGATTATTAGGGGCGGTGAAGCTGTTGGTTCGGTTTTTTCAATCCTCGATCGTCAAACAAAGATTGATCCGGATGATCCTGAGGCTGAGGTGGTTGAATCAGTTCGCGGAGAAATTGAACTTAGGCATGTTGATTTTGCGTACCCATCGCGACCTGATGTCATGGTGTTCAAAGATTTTAGTCTCAGAATCCGCACTGGCCAAAGCCAAGCACTTGTTGGAGCTAGTGGTTCAGGAAAGAGTTCCGTGATTGCATTGATCGAGCGGTTTTATGATCCGATGGTTGGTAAAGTAATGATCGATGGCAAAGACATTCGCCGACTGAACTTGAAGTCACTTAGGTTGAAGATTGGATTGGTGCAACAAGAACCAGCCCTGTTTGCATCAAGCATTTTCGAAAACATTGCCTACGGCAAAGAAGGCGCGACCGAAGCAGAAGTAATTGAAGCTGCACGTACTGCCAACGTGCATGGTTTTGTTAGCGGGTTGCCAGACGGATACAAAACCCCGGTGGGGGAGAGAGGAGTTCAGCTCTCCGGTGGACAGAAACAAAGAATTGCAATTGCACGGGCGGTGCTCAAGGACCCGAGAATACTATTGCTAGATGAGGCTACAAGTGCACTTGATGCCGAGTCAGAATGTGTGCTGCAAGAAGCACTCGAGAGGCTAATGAGGGGCCGCACCACCGTGCTTGTTGCCCACCGTTTGTCTACAATTAGAGGGGTGGACAGCATCGGCGTGGTGCAAGACGGGCGCATTGTTGAGCACGGCAGCCATTCGGAGCTAGCGAGCCGCCCCGACGGAGCTTATACAAGGCTGTTGCAGCTGCAAAATCATCACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0008150 GO:0008361 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009639 GO:0009640 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009908 GO:0009914 GO:0009926 GO:0009958 GO:0009966 GO:0009987 GO:0010033 GO:0010218 GO:0010315 GO:0010329 GO:0010540 GO:0010541 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0016043 GO:0022414 GO:0022622 GO:0022857 GO:0023051 GO:0032501 GO:0032502 GO:0032535 GO:0042221 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0044464 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048527 GO:0048528 GO:0048583 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080161 GO:0090066 GO:0090567 GO:0090691 GO:0090696 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1251

Amino Acids

136.56

Weight (kDa)

8.6

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	40 - 312	3.4e-53	ABC transporter transmembrane region
ABC_tran	PF00005	383 - 530	1.5e-31	ABC transporter
ABC_membrane	PF00664	686 - 956	2e-49	ABC transporter transmembrane region
ABC_tran	PF00005	1027 - 1175	1.1e-30	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28860
fragaria_vesca	FvH4_6g48960 FvH4_6g48960 FvH4_6g48960 FvH4_6g48960 FvH4_6g48960
malus_domestica	MD09G1049400.v1.1 MD17G1049500.v1.1 MD17G1049600.v1.1
prunus_persica	Prupe.3G269400_v2.0.a1 Prupe.3G269400_v2.0.a1
pyrus_communis	pycom111g04040 pycom17g04450
rosa_chinensis	RchiOBHm_Chr2g0168761
rosa_laevigata	RLG00000021808
rosa_multiflora	Rmu_ssc0000393.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082690
rosa_rugosa	Rorug02G0535300
rosa_samantha	Rh2BG619000 Rh2DG629700
rosa_wichuraiana	Rw2G050250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	328
AatII	GACGTC	2 cut(s)	390, 635
Acc16I	TGCGCA	1 cut(s)	690
Acc36I	ACCTGC	2 cut(s)	328, 1252
AccB1I	GGYRCC	3 cut(s)	134, 971, 2798
AccB7I	CCANNNNNTGG	1 cut(s)	1804
AccBSI	CCGCTC	1 cut(s)	3172
AccI	GTMKAC	1 cut(s)	3617
AccII	CGCG	6 cut(s)	1314, 1849, 2645, 3015, 3058, 3332
AccIII	TCCGGA	1 cut(s)	2977
AclI	AACGTT	1 cut(s)	509
AclWI	GGATC	7 cut(s)	1241, 1558, 2080, 2659, 2969, 2978, 3176
AcoI	YGGCCR	4 cut(s)	792, 2061, 2871, 3106
AcsI	RAATTY	2 cut(s)	217, 1091
AcuI	CTGAAG	5 cut(s)	1093, 1807, 2045, 2233, 2796
AcyI	GRCGYC	4 cut(s)	135, 387, 632, 2736
AflII	CTTAAG	1 cut(s)	1909
AhdI	GACNNNNNGTC	1 cut(s)	3065
AjiI	CACGTC	1 cut(s)	1859
AjnI	CCWGG	2 cut(s)	1254, 1335
AjuI	GAANNNNNNNTTGG	2 cut(s)	3245, 3277
AleI	CACNNNNGTG	1 cut(s)	3593
Alw21I	GWGCWC	8 cut(s)	147, 1217, 1999, 2346, 2691, 3486, 3529, 3675
Alw44I	GTGCAC	2 cut(s)	143, 3525
AlwI	GGATC	7 cut(s)	1241, 1558, 2080, 2659, 2969, 2978, 3176
AlwNI	CAGNNNCTG	2 cut(s)	64, 2885
Ama87I	CYCGRG	4 cut(s)	1367, 1992, 3493, 3566
Aor13HI	TCCGGA	1 cut(s)	2977
ApaLI	GTGCAC	2 cut(s)	143, 3525
ApoI	RAATTY	2 cut(s)	217, 1091
Asp700I	GAANNNNTTC	4 cut(s)	905, 2009, 3009, 3148
AspA2I	CCTAGG	1 cut(s)	808
AspLEI	GCGC	9 cut(s)	137, 559, 691, 1314, 1592, 1672, 1851, 3332, 3663
AspS9I	GGNCC	8 cut(s)	457, 730, 949, 1773, 2046, 2096, 3490, 3583
AsuC2I	CCSGG	4 cut(s)	582, 2086, 2906, 3416
AsuHPI	GGTGA	7 cut(s)	352, 586, 613, 731, 901, 1444, 2936
AsuII	TTCGAA	2 cut(s)	962, 3303
AsuNHI	GCTAGC	1 cut(s)	3691
AvaI	CYCGRG	4 cut(s)	1367, 1992, 3493, 3566
AvaII	GGWCC	3 cut(s)	457, 2096, 3490
AvrII	CCTAGG	1 cut(s)	808
AxyI	CCTNAGG	1 cut(s)	2988
BaeGI	GKGCMC	4 cut(s)	147, 847, 2803, 3529
BaeI	ACNNNNGTAYC	2 cut(s)	850, 883
BalI	TGGCCA	2 cut(s)	794, 3108
BanI	GGYRCC	3 cut(s)	134, 971, 2798
BanII	GRGCYC	2 cut(s)	1999, 2691
BauI	CACGAG	1 cut(s)	2684
BbsI	GAAGAC	3 cut(s)	32, 1413, 2177
Bbv12I	GWGCWC	8 cut(s)	147, 1217, 1999, 2346, 2691, 3486, 3529, 3675
BbvCI	CCTCAGC	3 cut(s)	350, 1429, 2994
BccI	CCATC	9 cut(s)	476, 887, 1003, 1840, 1940, 2319, 3061, 3181, 3203
BceAI	ACGGC	8 cut(s)	122, 163, 356, 838, 1169, 2886, 3334, 3691
BcgI	CGANNNNNNTGC	4 cut(s)	13, 47, 3293, 3327
BciT130I	CCWGG	2 cut(s)	1256, 1337
BciVI	GTATCC	2 cut(s)	992, 3398
BclI	TGATCA	1 cut(s)	676
BcnI	CCSGG	4 cut(s)	582, 2086, 2906, 3416
BfaI	CTAG	7 cut(s)	411, 809, 1631, 2277, 3132, 3509, 3692
BfmI	CTRYAG	1 cut(s)	2067
BfoI	RGCGCY	3 cut(s)	138, 560, 1593
BfrI	CTTAAG	1 cut(s)	1909
BfuAI	ACCTGC	2 cut(s)	328, 1252
BfuI	GTATCC	2 cut(s)	992, 3398
BglI	GCCNNNNNGGC	1 cut(s)	791
BlnI	CCTAGG	1 cut(s)	808
BlpI	GCTNAGC	1 cut(s)	2541
BmcAI	AGTACT	1 cut(s)	2079
Bme1390I	CCNGG	6 cut(s)	582, 1256, 1337, 2086, 2906, 3416
Bme18I	GGWCC	3 cut(s)	457, 2096, 3490
BmeRI	GACNNNNNGTC	1 cut(s)	3065
BmeT110I	CYCGRG	4 cut(s)	1367, 1992, 3493, 3566
BmgBI	CACGTC	1 cut(s)	1859
BmgT120I	GGNCC	8 cut(s)	457, 730, 949, 1773, 2046, 2096, 3490, 3583
BmrFI	CCNGG	6 cut(s)	582, 1256, 1337, 2086, 2906, 3416
BmtI	GCTAGC	1 cut(s)	3695
BpiI	GAAGAC	3 cut(s)	32, 1413, 2177
BpmI	CTGGAG	3 cut(s)	386, 438, 2589
Bpu10I	CCTNAGC	4 cut(s)	350, 1429, 1919, 2994
Bpu1102I	GCTNAGC	1 cut(s)	2541
Bpu14I	TTCGAA	2 cut(s)	962, 3303
BpuEI	CTTGAG	2 cut(s)	2329, 3470
BpuMI	CCSGG	4 cut(s)	582, 2086, 2906, 3416
Bsa29I	ATCGAT	1 cut(s)	3207
BsaAI	YACGTR	1 cut(s)	3362
BsaHI	GRCGYC	4 cut(s)	135, 387, 632, 2736
BsaI	GGTCTC	3 cut(s)	281, 806, 1117
BsaJI	CCNNGG	6 cut(s)	808, 967, 1050, 1255, 2904, 3414
BsaWI	WCCGGW	3 cut(s)	1126, 2977, 3443
BsaXI	ACNNNNNCTCC	6 cut(s)	137, 167, 411, 441, 1981, 2011
Bse118I	RCCGGY	5 cut(s)	160, 326, 596, 623, 1342
Bse1I	ACTGG	4 cut(s)	421, 646, 952, 3109
Bse21I	CCTNAGG	1 cut(s)	2988
Bse3DI	GCAATG	6 cut(s)	29, 684, 825, 1551, 1704, 3309
BseAI	TCCGGA	1 cut(s)	2977
BseBI	CCWGG	2 cut(s)	1256, 1337
BseCI	ATCGAT	1 cut(s)	3207
BseDI	CCNNGG	6 cut(s)	808, 967, 1050, 1255, 2904, 3414
BseGI	GGATG	9 cut(s)	293, 324, 754, 1078, 1135, 2295, 2330, 2386, 2986
BseMI	GCAATG	6 cut(s)	29, 684, 825, 1551, 1704, 3309
BseNI	ACTGG	4 cut(s)	421, 646, 952, 3109
BseRI	GAGGAG	8 cut(s)	101, 142, 1509, 2351, 2354, 2438, 2486, 3444
BseSI	GKGCMC	4 cut(s)	147, 847, 2803, 3529
BseYI	CCCAGC	1 cut(s)	2704
BsgI	GTGCAG	1 cut(s)	3342
Bsh1236I	CGCG	6 cut(s)	1314, 1849, 2645, 3015, 3058, 3332
Bsh1285I	CGRYCG	2 cut(s)	2959, 3336
BshNI	GGYRCC	3 cut(s)	134, 971, 2798
BshVI	ATCGAT	1 cut(s)	3207
BsiEI	CGRYCG	2 cut(s)	2959, 3336
BsiHKAI	GWGCWC	8 cut(s)	147, 1217, 1999, 2346, 2691, 3486, 3529, 3675
BsiHKCI	CYCGRG	4 cut(s)	1367, 1992, 3493, 3566
BsmBI	CGTCTC	2 cut(s)	1643, 2699
Bso31I	GGTCTC	3 cut(s)	281, 806, 1117
BsoBI	CYCGRG	4 cut(s)	1367, 1992, 3493, 3566
Bsp119I	TTCGAA	2 cut(s)	962, 3303
Bsp13I	TCCGGA	1 cut(s)	2977
Bsp1407I	TGTACA	2 cut(s)	321, 2193
Bsp1720I	GCTNAGC	1 cut(s)	2541
Bsp68I	TCGCGA	1 cut(s)	3058
BspDI	ATCGAT	1 cut(s)	3207
BspEI	TCCGGA	1 cut(s)	2977
BspFNI	CGCG	6 cut(s)	1314, 1849, 2645, 3015, 3058, 3332
BspHI	TCATGA	1 cut(s)	114
BspMI	ACCTGC	2 cut(s)	328, 1252
BspOI	GCTAGC	1 cut(s)	3695
BspPI	GGATC	7 cut(s)	1241, 1558, 2080, 2659, 2969, 2978, 3176
BspQI	GCTCTTC	2 cut(s)	86, 1205
BspT104I	TTCGAA	2 cut(s)	962, 3303
BspT107I	GGYRCC	3 cut(s)	134, 971, 2798
BspTI	CTTAAG	1 cut(s)	1909
BspTNI	GGTCTC	3 cut(s)	281, 806, 1117
BsrBI	CCGCTC	1 cut(s)	3172
BsrDI	GCAATG	6 cut(s)	29, 684, 825, 1551, 1704, 3309
BsrFI	RCCGGY	5 cut(s)	160, 326, 596, 623, 1342
BsrGI	TGTACA	2 cut(s)	321, 2193
BsrI	ACTGG	4 cut(s)	421, 646, 952, 3109
BssAI	RCCGGY	5 cut(s)	160, 326, 596, 623, 1342
BssECI	CCNNGG	6 cut(s)	808, 967, 1050, 1255, 2904, 3414
BssNI	GRCGYC	4 cut(s)	135, 387, 632, 2736
BssSI	CACGAG	1 cut(s)	2684
BssT1I	CCWWGG	2 cut(s)	808, 1050
Bst2BI	CACGAG	1 cut(s)	2684
Bst2UI	CCWGG	2 cut(s)	1256, 1337
Bst6I	CTCTTC	4 cut(s)	86, 456, 1205, 2681
BstACI	GRCGYC	4 cut(s)	135, 387, 632, 2736
BstAFI	CTTAAG	1 cut(s)	1909
BstAPI	GCANNNNNTGC	7 cut(s)	64, 251, 308, 1352, 2381, 3365, 3533
BstAUI	TGTACA	2 cut(s)	321, 2193
BstBAI	YACGTR	1 cut(s)	3362
BstBI	TTCGAA	2 cut(s)	962, 3303
BstF5I	GGATG	9 cut(s)	293, 324, 754, 1078, 1135, 2295, 2330, 2386, 2986
BstFNI	CGCG	6 cut(s)	1314, 1849, 2645, 3015, 3058, 3332
BstH2I	RGCGCY	3 cut(s)	138, 560, 1593
BstHHI	GCGC	9 cut(s)	137, 559, 691, 1314, 1592, 1672, 1851, 3332, 3663
BstMCI	CGRYCG	2 cut(s)	2959, 3336
BstNI	CCWGG	2 cut(s)	1256, 1337
BstNSI	RCATGY	2 cut(s)	315, 3038
BstSCI	CCNGG	6 cut(s)	580, 1254, 1335, 2084, 2904, 3414
BstSFI	CTRYAG	1 cut(s)	2067
BstSLI	GKGCMC	4 cut(s)	147, 847, 2803, 3529
BstUI	CGCG	6 cut(s)	1314, 1849, 2645, 3015, 3058, 3332
BstV2I	GAAGAC	3 cut(s)	32, 1413, 2177
BstX2I	RGATCY	2 cut(s)	1563, 2664
BstXI	CCANNNNNNTGG	1 cut(s)	2732
BstYI	RGATCY	2 cut(s)	1563, 2664
Bsu15I	ATCGAT	1 cut(s)	3207
Bsu36I	CCTNAGG	1 cut(s)	2988
BsuI	GTATCC	2 cut(s)	992, 3398
BsuTUI	ATCGAT	1 cut(s)	3207
BtgZI	GCGATG	2 cut(s)	1658, 3039
BtrI	CACGTC	1 cut(s)	1859
BtsCI	GGATG	9 cut(s)	293, 324, 754, 1078, 1135, 2295, 2330, 2386, 2986
BtsI	GCAGTG	1 cut(s)	1204
BtsIMutI	CAGTG	4 cut(s)	478, 1204, 1215, 3102
BtuMI	TCGCGA	1 cut(s)	3058
BveI	ACCTGC	2 cut(s)	328, 1252
CaiI	CAGNNNCTG	2 cut(s)	64, 2885
CciI	TCATGA	1 cut(s)	114
CfoI	GCGC	9 cut(s)	137, 559, 691, 1314, 1592, 1672, 1851, 3332, 3663
Cfr10I	RCCGGY	5 cut(s)	160, 326, 596, 623, 1342
Cfr13I	GGNCC	8 cut(s)	457, 730, 949, 1773, 2046, 2096, 3490, 3583
ClaI	ATCGAT	1 cut(s)	3207
CseI	GACGC	3 cut(s)	416, 1403, 2725
CspCI	CAANNNNNGTGG	2 cut(s)	3580, 3615
DinI	GGCGCC	1 cut(s)	136
DriI	GACNNNNNGTC	1 cut(s)	3065
EaeI	YGGCCR	4 cut(s)	792, 2061, 2871, 3106
Eam1104I	CTCTTC	4 cut(s)	86, 456, 1205, 2681
Eam1105I	GACNNNNNGTC	1 cut(s)	3065
EarI	CTCTTC	4 cut(s)	86, 456, 1205, 2681
EciI	GGCGGA	5 cut(s)	20, 56, 913, 1966, 2705
Ecl136II	GAGCTC	2 cut(s)	1997, 2689
Eco130I	CCWWGG	2 cut(s)	808, 1050
Eco24I	GRGCYC	2 cut(s)	1999, 2691
Eco31I	GGTCTC	3 cut(s)	281, 806, 1117
Eco32I	GATATC	1 cut(s)	2418
Eco47I	GGWCC	3 cut(s)	457, 2096, 3490
Eco53kI	GAGCTC	2 cut(s)	1997, 2689
Eco57I	CTGAAG	5 cut(s)	1093, 1807, 2045, 2233, 2796
Eco81I	CCTNAGG	1 cut(s)	2988
Eco88I	CYCGRG	4 cut(s)	1367, 1992, 3493, 3566
EcoICRI	GAGCTC	2 cut(s)	1997, 2689
EcoO109I	RGGNCCY	3 cut(s)	730, 1773, 3490
EcoRI	GAATTC	1 cut(s)	1091
EcoRII	CCWGG	2 cut(s)	1254, 1335
EcoRV	GATATC	1 cut(s)	2418
EcoT14I	CCWWGG	2 cut(s)	808, 1050
EcoT22I	ATGCAT	1 cut(s)	2773
EcoT38I	GRGCYC	2 cut(s)	1999, 2691
EgeI	GGCGCC	1 cut(s)	136
EheI	GGCGCC	1 cut(s)	136
ErhI	CCWWGG	2 cut(s)	808, 1050
Esp3I	CGTCTC	2 cut(s)	1643, 2699
FauI	CCCGC	3 cut(s)	511, 2161, 3383
FauNDI	CATATG	1 cut(s)	3749
FbaI	TGATCA	1 cut(s)	676
FblI	GTMKAC	1 cut(s)	3617
FokI	GGATG	9 cut(s)	280, 331, 761, 1085, 1142, 2302, 2337, 2393, 2993
FriOI	GRGCYC	2 cut(s)	1999, 2691
FspBI	CTAG	7 cut(s)	411, 809, 1631, 2277, 3132, 3509, 3692
FspI	TGCGCA	1 cut(s)	690
GlaI	GCGC	9 cut(s)	136, 558, 690, 1313, 1591, 1671, 1850, 3331, 3662
GsaI	CCCAGC	1 cut(s)	2708
GsuI	CTGGAG	3 cut(s)	386, 438, 2589
HaeII	RGCGCY	3 cut(s)	138, 560, 1593
HgaI	GACGC	3 cut(s)	416, 1403, 2725
HhaI	GCGC	9 cut(s)	137, 559, 691, 1314, 1592, 1672, 1851, 3332, 3663
Hin1I	GRCGYC	4 cut(s)	135, 387, 632, 2736
Hin6I	GCGC	9 cut(s)	135, 557, 689, 1312, 1590, 1670, 1849, 3330, 3661
HinP1I	GCGC	9 cut(s)	135, 557, 689, 1312, 1590, 1670, 1849, 3330, 3661
HincII	GTYRAC	3 cut(s)	193, 507, 1878
HindII	GTYRAC	3 cut(s)	193, 507, 1878
HindIII	AAGCTT	1 cut(s)	127
HinfI	GANTC	8 cut(s)	577, 585, 1794, 2202, 2487, 3005, 3096, 3539
HpaI	GTTAAC	1 cut(s)	193
HphI	GGTGA	7 cut(s)	352, 586, 613, 731, 901, 1444, 2936
Hpy99I	CGWCG	4 cut(s)	143, 392, 410, 3710
HpyCH4IV	ACGT	9 cut(s)	387, 509, 632, 714, 1410, 1858, 2184, 3361, 3372
HpySE526I	ACGT	9 cut(s)	387, 509, 632, 714, 1410, 1858, 2184, 3361, 3372
Hsp92I	GRCGYC	4 cut(s)	135, 387, 632, 2736
HspAI	GCGC	9 cut(s)	135, 557, 689, 1312, 1590, 1670, 1849, 3330, 3661
KasI	GGCGCC	1 cut(s)	134
Kpn2I	TCCGGA	1 cut(s)	2977
KroI	GCCGGC	1 cut(s)	596
KroNI	GCCGGC	1 cut(s)	598
Ksp22I	TGATCA	1 cut(s)	676
KspAI	GTTAAC	1 cut(s)	193
LguI	GCTCTTC	2 cut(s)	86, 1205
MaeI	CTAG	7 cut(s)	411, 809, 1631, 2277, 3132, 3509, 3692
MaeII	ACGT	9 cut(s)	387, 509, 632, 714, 1410, 1858, 2184, 3361, 3372
MaeIII	GTNAC	5 cut(s)	289, 776, 1102, 2866, 3240
MbiI	CCGCTC	1 cut(s)	3172
MfeI	CAATTG	3 cut(s)	1298, 1533, 3468
MflI	RGATCY	2 cut(s)	1563, 2664
MlsI	TGGCCA	2 cut(s)	794, 3108
MluNI	TGGCCA	2 cut(s)	794, 3108
Mly113I	GGCGCC	1 cut(s)	135
MlyI	GAGTC	3 cut(s)	2211, 2496, 3548
MmeI	TCCRAC	6 cut(s)	1627, 2123, 2302, 2376, 2556, 3106
Mox20I	TGGCCA	2 cut(s)	794, 3108
Mph1103I	ATGCAT	1 cut(s)	2773
MroI	TCCGGA	1 cut(s)	2977
MroNI	GCCGGC	1 cut(s)	596
MroXI	GAANNNNTTC	4 cut(s)	905, 2009, 3009, 3148
MscI	TGGCCA	2 cut(s)	794, 3108
MseI	TTAA	5 cut(s)	192, 1020, 1889, 1910, 2844
MslI	CAYNNNNRTG	3 cut(s)	161, 3593, 3644
Msp20I	TGGCCA	2 cut(s)	794, 3108
MspA1I	CMGCKG	3 cut(s)	14, 2704, 3733
MspCI	CTTAAG	1 cut(s)	1909
MspR9I	CCNGG	6 cut(s)	582, 1256, 1337, 2086, 2906, 3416
MunI	CAATTG	3 cut(s)	1298, 1533, 3468
MvaI	CCWGG	2 cut(s)	1256, 1337
MvnI	CGCG	6 cut(s)	1314, 1849, 2645, 3015, 3058, 3332
NaeI	GCCGGC	1 cut(s)	598
NarI	GGCGCC	1 cut(s)	135
NciI	CCSGG	4 cut(s)	582, 2086, 2906, 3416
NdeI	CATATG	1 cut(s)	3749
NgoMIV	GCCGGC	1 cut(s)	596
NheI	GCTAGC	1 cut(s)	3691
NmeAIII	GCCGAG	2 cut(s)	783, 3562
NmuCI	GTSAC	1 cut(s)	3240
NruI	TCGCGA	1 cut(s)	3058
NsbI	TGCGCA	1 cut(s)	690
NsiI	ATGCAT	1 cut(s)	2773
NspI	RCATGY	2 cut(s)	315, 3038
NspV	TTCGAA	2 cut(s)	962, 3303
OliI	CACNNNNGTG	1 cut(s)	3593
PaeI	GCATGC	1 cut(s)	315
PaeR7I	CTCGAG	3 cut(s)	1367, 1992, 3566
PagI	TCATGA	1 cut(s)	114
PaqCI	CACCTGC	1 cut(s)	328
PciSI	GCTCTTC	2 cut(s)	86, 1205
PcsI	WCGNNNNNNNCGW	4 cut(s)	201, 396, 2831, 3692
PdiI	GCCGGC	1 cut(s)	598
PdmI	GAANNNNTTC	4 cut(s)	905, 2009, 3009, 3148
PfeI	GAWTC	5 cut(s)	577, 585, 1794, 3005, 3096
PflFI	GACNNNGTC	1 cut(s)	425
PflMI	CCANNNNNTGG	1 cut(s)	1804
PfoI	TCCNGGA	1 cut(s)	580
Ple19I	CGATCG	1 cut(s)	2959
PleI	GAGTC	3 cut(s)	2210, 2495, 3547
PluTI	GGCGCC	1 cut(s)	138
PpsI	GAGTC	3 cut(s)	2210, 2495, 3547
Ppu21I	YACGTR	1 cut(s)	3362
PpuMI	RGGWCCY	1 cut(s)	3490
Psp124BI	GAGCTC	2 cut(s)	1999, 2691
Psp1406I	AACGTT	1 cut(s)	509
Psp5II	RGGWCCY	1 cut(s)	3490
Psp6I	CCWGG	2 cut(s)	1254, 1335
PspFI	CCCAGC	1 cut(s)	2704
PspGI	CCWGG	2 cut(s)	1254, 1335
PspPI	GGNCC	8 cut(s)	457, 730, 949, 1773, 2046, 2096, 3490, 3583
PspPPI	RGGWCCY	1 cut(s)	3490
PspXI	VCTCGAGB	1 cut(s)	1992
PstNI	CAGNNNCTG	2 cut(s)	64, 2885
PsuI	RGATCY	2 cut(s)	1563, 2664
PsyI	GACNNNGTC	1 cut(s)	425
PvuI	CGATCG	1 cut(s)	2959
PvuII	CAGCTG	2 cut(s)	2704, 3733
RruI	TCGCGA	1 cut(s)	3058
RseI	CAYNNNNRTG	3 cut(s)	161, 3593, 3644
SacI	GAGCTC	2 cut(s)	1999, 2691
SapI	GCTCTTC	2 cut(s)	86, 1205
SaqAI	TTAA	5 cut(s)	192, 1020, 1889, 1910, 2844
Sau96I	GGNCC	8 cut(s)	457, 730, 949, 1773, 2046, 2096, 3490, 3583
ScaI	AGTACT	1 cut(s)	2079
SchI	GAGTC	3 cut(s)	2211, 2496, 3548
ScrFI	CCNGG	6 cut(s)	582, 1256, 1337, 2086, 2906, 3416
SfcI	CTRYAG	1 cut(s)	2067
SfiI	GGCCNNNNNGGCC	1 cut(s)	791
SfoI	GGCGCC	1 cut(s)	136
Sfr274I	CTCGAG	3 cut(s)	1367, 1992, 3566
SfuI	TTCGAA	2 cut(s)	962, 3303
SgrAI	CRCCGGYG	1 cut(s)	326
SinI	GGWCC	3 cut(s)	457, 2096, 3490
SlaI	CTCGAG	3 cut(s)	1367, 1992, 3566
SmiMI	CAYNNNNRTG	3 cut(s)	161, 3593, 3644
SmlI	CTYRAG	6 cut(s)	1367, 1909, 1992, 2308, 3485, 3566
SmoI	CTYRAG	6 cut(s)	1367, 1909, 1992, 2308, 3485, 3566
SphI	GCATGC	1 cut(s)	315
SspDI	GGCGCC	1 cut(s)	134
SspI	AATATT	1 cut(s)	2629
SspMI	CTAG	7 cut(s)	411, 809, 1631, 2277, 3132, 3509, 3692
SstI	GAGCTC	2 cut(s)	1999, 2691
StyD4I	CCNGG	6 cut(s)	580, 1254, 1335, 2084, 2904, 3414
StyI	CCWWGG	2 cut(s)	808, 1050
TaiI	ACGT	9 cut(s)	390, 512, 635, 717, 1413, 1861, 2187, 3364, 3375
TaqII	GACCGA	4 cut(s)	263, 1887, 2084, 3350
TatI	WGTACW	4 cut(s)	258, 321, 2077, 2193
TauI	GCSGC	8 cut(s)	17, 603, 1424, 2066, 2645, 2721, 3588, 3702
TfiI	GAWTC	5 cut(s)	577, 585, 1794, 3005, 3096
Tru1I	TTAA	5 cut(s)	192, 1020, 1889, 1910, 2844
Tru9I	TTAA	5 cut(s)	192, 1020, 1889, 1910, 2844
TscAI	CASTG	4 cut(s)	478, 1204, 1222, 3109
TseFI	GTSAC	1 cut(s)	3240
Tsp45I	GTSAC	1 cut(s)	3240
TspGWI	ACGGA	7 cut(s)	458, 1071, 2393, 2681, 3142, 3417, 3723
TspRI	CASTG	4 cut(s)	478, 1204, 1222, 3109
Tth111I	GACNNNGTC	1 cut(s)	425
Van91I	CCANNNNNTGG	1 cut(s)	1804
Vha464I	CTTAAG	1 cut(s)	1909
VneI	GTGCAC	2 cut(s)	143, 3525
VpaK11BI	GGWCC	3 cut(s)	457, 2096, 3490
XapI	RAATTY	2 cut(s)	217, 1091
XbaI	TCTAGA	1 cut(s)	1630
XceI	RCATGY	2 cut(s)	315, 3038
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1805, 3122
XhoI	CTCGAG	3 cut(s)	1367, 1992, 3566
XmaJI	CCTAGG	1 cut(s)	808
XmiI	GTMKAC	1 cut(s)	3617
XmnI	GAANNNNTTC	4 cut(s)	905, 2009, 3009, 3148
XspI	CTAG	7 cut(s)	411, 809, 1631, 2277, 3132, 3509, 3692
ZraI	GACGTC	2 cut(s)	388, 633
ZrmI	AGTACT	1 cut(s)	2079
Zsp2I	ATGCAT	1 cut(s)	2773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.