Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0009778

Physical Location & Seq

Genomic Coordinates Forward (+)

85910155 .. 85917837

Gene Structure 7683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG629700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3084 bp

ATGGCTGAGCAAGCCATTGCACAAGTACGGACAGTTAAATCATATGTTGGTGAAAGCAAGGCCCTGAATTCGTATTCAGATGCCATACAGAACACCTTGCAGCTTGGTTACAAGGCCGGAATGGCCAAAGGTCTGGGGTTAGGGTGTACCTATGGCATAGCTTGTATGTCGTGGGCTCTTGTTTTCTGGTATGCCGGTGTGTTTATCCGAAATGGACAGACTGATGGAGGGAAAGCATTCACAGCCATTTTTTCAGCTATTGTTGGTGGCATGAGCTTGGGTCAGTCATTTTCCAATCTTGGGGCCTTTAGCAAAGGTAAATCAGCTGGTTACAAGTTGATGGAGATTATTAGGCAAAAGCCCACCATAATTCAGGACCAGTTGGATGGAAAGTGCTTGTCTGAGGTTAAAGGAAACATAGAACTCAAGGAGGTGACATTCAGCTACCCATCCAGGCCAGATGTTATCATTTTCCGAAATTTTTCAATCTTCTTCCCAGCTGGAAAGACTGTTGCCGTTGTTGGCGGCAGTGGTTCAGGGAAAAGCACCGTTGTCTCTCTGATTGAAAGGTTTTACGATCCTAACCAGGGTCAGGTATTGCTGGATGGTGTGGACATAAGAACACTGCAGCTGAAATGGTTACGTGATCAGATGGGCCTGGTAAACCAGGAGCCTGCACTCTTTGCTACTACCATTCTTGAGAACATACTCTATGGAAAGCCTGATGCAACAATGGATGAAGTAGAAGCTGCAGCCTCTGCAGCTAATGCTCATAGTTTCATCACTTTGCTTCCTAATGGGTATAACACTCAGGTAGGAGAGCGAGGAGTCCAACTCTCTGGAGGTCAAAAACAGAGAATTGCAATTGCTAGAGCTATGTTGAAAGACCCAAAGATCCTGCTTCTTGATGAAGCAACCAGCGCCCTTGATGCAAGCTCTGAGAGCATTGTTCAAGAAGCTCTAGATCGTCTCATGGTTGGGAGGACAACTGTAGTTGTGGCACATCGCCTTTCCACCATAAGGAATGTTGACAGCATTGCAGTTATACAACAAGGGCAAGTTGTTGAGACAGGAACTCATGAAGAACTGATTGCCAAAGCTGGGGCTTATTCTTCATTAATTCGGTTCCAAGAAATGGTTGGAAACAGAGACTTCAGGAATCCATCTACTCGTTGTTCACGATCATCACGACTAAGCCACTCATTGTCAACCAAGTCTTTGAGCCTCCGGTCTGGCAGCTTAAGGAACCTGAGCTACCAGTACAGTACTGGTGCTGATGGGAGGATAGAGATGATTTCAAATGCTGAGACAGACAGGAAAACTCGAGCTCCAAGGGGATATTTCTTTCGGCTTCTCACGCTAAATGCTCCTGAATGGCCCTATTCAATCATGGGTGCCATAGGATCAGTACTATCCGGGTTTATCGGTCCAACCTTTGCTATTGTAATGAGCAACATGATTGAGGTGTTCTATTATAGAAATCCTGCTTCCATGGAGAGGAAGACAAAGGAGTATGTCTTCATTTACATAGGAGCTGGGCTCTATGCTGTAGTTGCATATTTGATACAACATTACTTCTTCAGCATAATGGGAGAGAACCTCACTACTAGAGTAAGGAGGATGATGCTTGCAGCAATTTTAAGGAACGAAGTCGGATGGTATGATGAAGAGGAGAACAACTCGAGTCTTCTAGCCTCAAAACTGGCCACAGATGCTGCTGATGTGAAATCCGCAATTGCTGAGAGGATTTCTGTGATTCTGCAGAACATGACTTCACTGCTCACTTCATTCATAGTTGCTTTCATTGTGGAATGGAGGGTCTCCCTGCTTATCCTAGCAACCTTTCCTCTTTTGGTTCTTGCCAACTTTGCTCAGCAACTTTCGCTTAAAGGTTTTGCCGGAGACACTGCCAAGGCTCATGCAAAGACGAGCATGATTGCAGGGGAAGGAGTGAGCAACATTCGAACAGTTGCAGCCTTCAACGCACAAGACAAGATCCTCTCTCTCTTCTGCCATGAGCTTCGTATCCCACAACTAGGAAGCCTTCGTCGGAGCCAAACTGCTGGTCTCCTATTTGGCCTCTCACAACTTGCGTTATATGCATCTGAAGCTCTCATTCTATGGTATGGCGCCCACCTTGTGAGCAAAGGTGTCTCAACCTTCTCCAAAGTCATCAAGGTTTTTGTGGTCCTGGTTGTAACAGCCAATTCAGTAGCAGAAACAGTTAGTCTTGCCCCTGAGATTATTAGGGGTGGTGAAGCTGTTGGCTCTGTGTTTTCAATTCTTGATCGCCAAACTAGGATTGACCCGGATGACCCTGAGGCTGAGGTGGTTGAAACAATTCGTGGGGAAATTGAACTTAGGCATGTCGATTTTGCATACCCTTCACGTCCTGATATTATGATCTTTAAAGATTTTAATCTCAGAATCCGTACTGGCCAAAGCCAAGCACTTGTTGGAGCTAGTGGTTCGGGGAAGAGTTCTGTGATTGCATTGATCGAGAGGTTCTATGATCCAATAGTTGGGAAGGTAATGATTGATGGCAAAGACATTCGACGTCTGAACTTGAAGTCTCTTAGGCTGAAAATTGGTTTGGTGCAACAAGAACCAGCTCTCTTTGCAGCAAGCATTTTCGATAACATTGCCTATGGAAAAGAAGGTGCAACCGAAGCAGAAGTAGTCGAAGCTGCACGTACAGCCAATGTGCATGGATTTGTTAGTGGATTGCCCGATGGGTACAAAACTCCTGTTGGGGAGAGAGGGGTTCAGCTCTCAGGAGGACAGAAACAAAGAATTGCTATAGCAAGAGCTGTGCTCAAGGACCCAACAATACTTTTGCTGGATGAAGCCACTAGTGCACTGGATGCAGAATCAGAATGTGTACTACAAGAAGCACTGGAGAGGCTCATGAGGGGCCGAACTACTGTGCTGGTTGCCCACCGTTTATCAACAATTAGAGGGGTGGATAGCATCGGTGTGGTGCAAGATGGGCGCATTGTGGAACATGGAAGCCACTCAGAACTTGTGAGCCGCCCAGATGGGGCATATTCGAGACTCTTGCAGCTACAAAATCATCGGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0008150 GO:0008361 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009639 GO:0009640 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009908 GO:0009914 GO:0009926 GO:0009958 GO:0009966 GO:0009987 GO:0010033 GO:0010218 GO:0010315 GO:0010329 GO:0010540 GO:0010541 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0016043 GO:0022414 GO:0022622 GO:0022857 GO:0023051 GO:0032501 GO:0032502 GO:0032535 GO:0042221 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0044464 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048527 GO:0048528 GO:0048583 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080161 GO:0090066 GO:0090567 GO:0090691 GO:0090696 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1027

Amino Acids

111.91

Weight (kDa)

8.9

Isoelectric Point (pI)

34.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	2 - 89	8.6e-12	ABC transporter transmembrane region
ABC_tran	PF00005	159 - 307	1.2e-31	ABC transporter
ABC_membrane	PF00664	463 - 733	7.2e-50	ABC transporter transmembrane region
ABC_tran	PF00005	804 - 952	2.1e-30	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0009778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28860
fragaria_vesca	FvH4_6g48960 FvH4_6g48960 FvH4_6g48960 FvH4_6g48960 FvH4_6g48960
malus_domestica	MD09G1049400.v1.1 MD17G1049500.v1.1 MD17G1049600.v1.1
prunus_persica	Prupe.3G269400_v2.0.a1 Prupe.3G269400_v2.0.a1
pyrus_communis	pycom111g04040 pycom17g04450
rosa_chinensis	RchiOBHm_Chr2g0168761
rosa_laevigata	RLG00000021808
rosa_multiflora	Rmu_ssc0000393.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082690
rosa_rugosa	Rorug02G0535300
rosa_samantha	Rh2BG619000 Rh2DG629700
rosa_wichuraiana	Rw2G050250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	2560
AccB1I	GGYRCC	2 cut(s)	1394, 2129
AccB7I	CCANNNNNTGG	2 cut(s)	1135, 2522
AciI	CCGC	3 cut(s)	525, 1731, 3031
AclWI	GGATC	5 cut(s)	572, 889, 1411, 1990, 2507
AcoI	YGGCCR	3 cut(s)	123, 1704, 2437
AcsI	RAATTY	2 cut(s)	67, 478
AcuI	CTGAAG	3 cut(s)	1138, 1564, 2127
AcyI	GRCGYC	2 cut(s)	2130, 2557
AdeI	CACNNNGTG	1 cut(s)	2140
AfaI	GTAC	9 cut(s)	27, 148, 1262, 1267, 1410, 2434, 2695, 2738, 2883
AflII	CTTAAG	1 cut(s)	1240
AhlI	ACTAGT	1 cut(s)	2852
AjiI	CACGTC	1 cut(s)	2390
AjnI	CCWGG	5 cut(s)	452, 585, 657, 666, 2190
AjuI	GAANNNNNNNTTGG	2 cut(s)	2576, 2608
Alw21I	GWGCWC	3 cut(s)	1330, 2817, 2860
Alw44I	GTGCAC	1 cut(s)	2856
AlwI	GGATC	5 cut(s)	572, 889, 1411, 1990, 2507
AlwNI	CAGNNNCTG	2 cut(s)	758, 1715
Ama87I	CYCGRG	2 cut(s)	1323, 1681
ApaLI	GTGCAC	1 cut(s)	2856
ApoI	RAATTY	2 cut(s)	67, 478
ArsI	GACNNNNNNTTYG	2 cut(s)	2050, 2082
AseI	ATTAAT	1 cut(s)	1118
Asp700I	GAANNNNTTC	3 cut(s)	236, 481, 2340
AspLEI	GCGC	3 cut(s)	923, 2132, 2994
AspS9I	GGNCC	9 cut(s)	61, 303, 376, 655, 1377, 1427, 2188, 2821, 2914
AsuC2I	CCSGG	2 cut(s)	1417, 2309
AsuHPI	GGTGA	3 cut(s)	62, 445, 2267
AsuII	TTCGAA	1 cut(s)	1963
AvaI	CYCGRG	2 cut(s)	1323, 1681
AvaII	GGWCC	4 cut(s)	376, 1427, 2188, 2821
AxyI	CCTNAGG	1 cut(s)	2319
BaeGI	GKGCMC	1 cut(s)	2860
BalI	TGGCCA	3 cut(s)	125, 1706, 2439
BanI	GGYRCC	2 cut(s)	1394, 2129
BanII	GRGCYC	3 cut(s)	178, 1330, 1542
BbsI	GAAGAC	3 cut(s)	1508, 1510, 1679
Bbv12I	GWGCWC	3 cut(s)	1330, 2817, 2860
BbvCI	CCTCAGC	1 cut(s)	2325
BceAI	ACGGC	1 cut(s)	500
BcgI	CGANNNNNNTGC	4 cut(s)	2624, 2658, 3040, 3074
BciT130I	CCWGG	5 cut(s)	454, 587, 659, 668, 2192
BciVI	GTATCC	1 cut(s)	2036
BclI	TGATCA	1 cut(s)	646
BcnI	CCSGG	2 cut(s)	1417, 2309
BcuI	ACTAGT	1 cut(s)	2852
BfaI	CTAG	9 cut(s)	870, 962, 1608, 1691, 1835, 2036, 2298, 2463, 2853
BfmI	CTRYAG	7 cut(s)	626, 750, 759, 990, 1548, 1760, 2799
BfoI	RGCGCY	2 cut(s)	924, 2133
BfrI	CTTAAG	1 cut(s)	1240
BfuI	GTATCC	1 cut(s)	2036
BglI	GCCNNNNNGGC	1 cut(s)	122
BlpI	GCTNAGC	2 cut(s)	6, 1872
BmcAI	AGTACT	2 cut(s)	1267, 1410
Bme1390I	CCNGG	7 cut(s)	454, 587, 659, 668, 1417, 2192, 2309
Bme18I	GGWCC	4 cut(s)	376, 1427, 2188, 2821
BmeT110I	CYCGRG	2 cut(s)	1323, 1681
BmgBI	CACGTC	1 cut(s)	2390
BmgT120I	GGNCC	9 cut(s)	61, 303, 376, 655, 1377, 1427, 2188, 2821, 2914
BmiI	GGNNCC	9 cut(s)	304, 672, 1127, 1247, 1396, 2054, 2131, 2823, 2915
BmrFI	CCNGG	7 cut(s)	454, 587, 659, 668, 1417, 2192, 2309
BmsI	GCATC	8 cut(s)	70, 715, 919, 1614, 1702, 2111, 2854, 2979
BpiI	GAAGAC	3 cut(s)	1508, 1510, 1679
BpmI	CTGGAG	2 cut(s)	861, 2918
Bpu10I	CCTNAGC	2 cut(s)	1250, 2325
Bpu1102I	GCTNAGC	2 cut(s)	6, 1872
Bpu14I	TTCGAA	1 cut(s)	1963
BpuEI	CTTGAG	3 cut(s)	410, 719, 2801
BpuMI	CCSGG	2 cut(s)	1417, 2309
BsaAI	YACGTR	2 cut(s)	644, 2693
BsaBI	GATNNNNATC	1 cut(s)	2418
BsaHI	GRCGYC	2 cut(s)	2130, 2557
BsaI	GGTCTC	2 cut(s)	1825, 2072
BsaJI	CCNNGG	4 cut(s)	586, 1331, 1491, 1911
BsaWI	WCCGGW	1 cut(s)	1227
BsaXI	ACNNNNNCTCC	2 cut(s)	1312, 1342
Bse118I	RCCGGY	1 cut(s)	194
Bse1I	ACTGG	7 cut(s)	379, 1258, 1273, 1707, 2440, 2865, 2901
Bse21I	CCTNAGG	1 cut(s)	2319
Bse3DI	GCAATG	3 cut(s)	15, 1035, 2640
Bse8I	GATNNNNATC	1 cut(s)	2418
BseBI	CCWGG	5 cut(s)	454, 587, 659, 668, 2192
BseDI	CCNNGG	4 cut(s)	586, 1331, 1491, 1911
BseGI	GGATG	9 cut(s)	391, 449, 610, 742, 1626, 1661, 2317, 2848, 2869
BseJI	GATNNNNATC	1 cut(s)	2418
BseMI	GCAATG	3 cut(s)	15, 1035, 2640
BseNI	ACTGG	7 cut(s)	379, 1258, 1273, 1707, 2440, 2865, 2901
BseRI	GAGGAG	2 cut(s)	840, 1685
BseSI	GKGCMC	1 cut(s)	2860
BseYI	CCCAGC	3 cut(s)	496, 1100, 1535
BsgI	GTGCAG	2 cut(s)	660, 2673
BshNI	GGYRCC	2 cut(s)	1394, 2129
BsiHKAI	GWGCWC	3 cut(s)	1330, 2817, 2860
BsiHKCI	CYCGRG	2 cut(s)	1323, 1681
BsiSI	CCGG	6 cut(s)	117, 195, 1228, 1416, 1899, 2309
BsmBI	CGTCTC	1 cut(s)	974
BsmI	GAATGC	1 cut(s)	236
Bso31I	GGTCTC	2 cut(s)	1825, 2072
BsoBI	CYCGRG	2 cut(s)	1323, 1681
Bsp119I	TTCGAA	1 cut(s)	1963
Bsp1286I	GDGCHC	5 cut(s)	178, 1330, 1542, 2817, 2860
Bsp1720I	GCTNAGC	2 cut(s)	6, 1872
Bsp19I	CCATGG	1 cut(s)	1491
BspACI	CCGC	3 cut(s)	525, 1731, 3031
BspHI	TCATGA	2 cut(s)	1078, 2907
BspLI	GGNNCC	9 cut(s)	304, 672, 1127, 1247, 1396, 2054, 2131, 2823, 2915
BspMAI	CTGCAG	4 cut(s)	630, 754, 763, 1764
BspPI	GGATC	5 cut(s)	572, 889, 1411, 1990, 2507
BspT104I	TTCGAA	1 cut(s)	1963
BspT107I	GGYRCC	2 cut(s)	1394, 2129
BspTI	CTTAAG	1 cut(s)	1240
BspTNI	GGTCTC	2 cut(s)	1825, 2072
BsrDI	GCAATG	3 cut(s)	15, 1035, 2640
BsrFI	RCCGGY	1 cut(s)	194
BsrI	ACTGG	7 cut(s)	379, 1258, 1273, 1707, 2440, 2865, 2901
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	4 cut(s)	586, 1331, 1491, 1911
BssNI	GRCGYC	2 cut(s)	2130, 2557
BssT1I	CCWWGG	3 cut(s)	1331, 1491, 1911
Bst2UI	CCWGG	5 cut(s)	454, 587, 659, 668, 2192
Bst4CI	ACNGT	9 cut(s)	34, 511, 550, 991, 1265, 1969, 2224, 2926, 2942
Bst6I	CTCTTC	3 cut(s)	1662, 2012, 2471
BstACI	GRCGYC	2 cut(s)	2130, 2557
BstAFI	CTTAAG	1 cut(s)	1240
BstAPI	GCANNNNNTGC	4 cut(s)	683, 758, 767, 2864
BstBAI	YACGTR	2 cut(s)	644, 2693
BstBI	TTCGAA	1 cut(s)	1963
BstC8I	GCNNGC	5 cut(s)	12, 675, 934, 1629, 2626
BstDSI	CCRYGG	1 cut(s)	1491
BstF5I	GGATG	9 cut(s)	391, 449, 610, 742, 1626, 1661, 2317, 2848, 2869
BstH2I	RGCGCY	2 cut(s)	924, 2133
BstHHI	GCGC	3 cut(s)	923, 2132, 2994
BstNI	CCWGG	5 cut(s)	454, 587, 659, 668, 2192
BstNSI	RCATGY	1 cut(s)	2369
BstSCI	CCNGG	7 cut(s)	452, 585, 657, 666, 1415, 2190, 2307
BstSFI	CTRYAG	7 cut(s)	626, 750, 759, 990, 1548, 1760, 2799
BstSLI	GKGCMC	1 cut(s)	2860
BstV2I	GAAGAC	3 cut(s)	1508, 1510, 1679
BstX2I	RGATCY	2 cut(s)	894, 1995
BstXI	CCANNNNNNTGG	4 cut(s)	133, 386, 839, 2063
BstYI	RGATCY	2 cut(s)	894, 1995
Bsu36I	CCTNAGG	1 cut(s)	2319
BsuI	GTATCC	1 cut(s)	2036
BtgI	CCRYGG	1 cut(s)	1491
BtgZI	GCGATG	1 cut(s)	989
BtrI	CACGTC	1 cut(s)	2390
BtsCI	GGATG	9 cut(s)	391, 449, 610, 742, 1626, 1661, 2317, 2848, 2869
BtsI	GCAGTG	4 cut(s)	535, 623, 1775, 1905
BtsIMutI	CAGTG	6 cut(s)	535, 623, 1775, 1905, 2858, 2894
Cac8I	GCNNGC	5 cut(s)	12, 675, 934, 1629, 2626
CaiI	CAGNNNCTG	2 cut(s)	758, 1715
CciI	TCATGA	2 cut(s)	1078, 2907
CfoI	GCGC	3 cut(s)	923, 2132, 2994
Cfr10I	RCCGGY	1 cut(s)	194
Cfr13I	GGNCC	9 cut(s)	61, 303, 376, 655, 1377, 1427, 2188, 2821, 2914
Csp6I	GTAC	9 cut(s)	26, 147, 1261, 1266, 1409, 2433, 2694, 2737, 2882
CviQI	GTAC	9 cut(s)	26, 147, 1261, 1266, 1409, 2433, 2694, 2737, 2882
DinI	GGCGCC	1 cut(s)	2131
DraI	TTTAAA	1 cut(s)	2410
DraIII	CACNNNGTG	1 cut(s)	2140
EaeI	YGGCCR	3 cut(s)	123, 1704, 2437
Eam1104I	CTCTTC	3 cut(s)	1662, 2012, 2471
EarI	CTCTTC	3 cut(s)	1662, 2012, 2471
Ecl136II	GAGCTC	1 cut(s)	1328
Eco130I	CCWWGG	3 cut(s)	1331, 1491, 1911
Eco24I	GRGCYC	3 cut(s)	178, 1330, 1542
Eco31I	GGTCTC	2 cut(s)	1825, 2072
Eco47I	GGWCC	4 cut(s)	376, 1427, 2188, 2821
Eco53kI	GAGCTC	1 cut(s)	1328
Eco57I	CTGAAG	3 cut(s)	1138, 1564, 2127
Eco81I	CCTNAGG	1 cut(s)	2319
Eco88I	CYCGRG	2 cut(s)	1323, 1681
EcoICRI	GAGCTC	1 cut(s)	1328
EcoO109I	RGGNCCY	3 cut(s)	61, 303, 2821
EcoRI	GAATTC	1 cut(s)	67
EcoRII	CCWGG	5 cut(s)	452, 585, 657, 666, 2190
EcoT14I	CCWWGG	3 cut(s)	1331, 1491, 1911
EcoT22I	ATGCAT	1 cut(s)	2104
EcoT38I	GRGCYC	3 cut(s)	178, 1330, 1542
EgeI	GGCGCC	1 cut(s)	2131
EheI	GGCGCC	1 cut(s)	2131
ErhI	CCWWGG	3 cut(s)	1331, 1491, 1911
Esp3I	CGTCTC	1 cut(s)	974
FauNDI	CATATG	1 cut(s)	43
FbaI	TGATCA	1 cut(s)	646
FokI	GGATG	9 cut(s)	398, 436, 617, 749, 1633, 1668, 2324, 2855, 2876
FriOI	GRGCYC	3 cut(s)	178, 1330, 1542
FspBI	CTAG	9 cut(s)	870, 962, 1608, 1691, 1835, 2036, 2298, 2463, 2853
GlaI	GCGC	3 cut(s)	922, 2131, 2993
GsaI	CCCAGC	3 cut(s)	500, 1104, 1539
GsuI	CTGGAG	2 cut(s)	861, 2918
HaeII	RGCGCY	2 cut(s)	924, 2133
HapII	CCGG	6 cut(s)	117, 195, 1228, 1416, 1899, 2309
HhaI	GCGC	3 cut(s)	923, 2132, 2994
Hin1I	GRCGYC	2 cut(s)	2130, 2557
Hin6I	GCGC	3 cut(s)	921, 2130, 2992
HinP1I	GCGC	3 cut(s)	921, 2130, 2992
HincII	GTYRAC	2 cut(s)	1030, 1209
HindII	GTYRAC	2 cut(s)	1030, 1209
HinfI	GANTC	7 cut(s)	828, 1159, 1684, 1756, 2427, 2870, 3054
HpaII	CCGG	6 cut(s)	117, 195, 1228, 1416, 1899, 2309
HphI	GGTGA	3 cut(s)	62, 445, 2267
Hpy166II	GTNNAC	8 cut(s)	147, 613, 664, 1030, 1178, 1209, 2858, 2882
Hpy8I	GTNNAC	8 cut(s)	147, 613, 664, 1030, 1178, 1209, 2858, 2882
Hpy99I	CGWCG	2 cut(s)	2052, 2559
HpyAV	CCTTC	7 cut(s)	1940, 1987, 2054, 2170, 2394, 2521, 2651
HpyCH4III	ACNGT	9 cut(s)	34, 511, 550, 991, 1265, 1969, 2224, 2926, 2942
HpyCH4IV	ACGT	4 cut(s)	643, 2389, 2557, 2692
HpySE526I	ACGT	4 cut(s)	643, 2389, 2557, 2692
Hsp92I	GRCGYC	2 cut(s)	2130, 2557
HspAI	GCGC	3 cut(s)	921, 2130, 2992
KasI	GGCGCC	1 cut(s)	2129
Ksp22I	TGATCA	1 cut(s)	646
LmnI	GCTCC	6 cut(s)	670, 1333, 1372, 1532, 2052, 2459
LweI	GCATC	8 cut(s)	70, 715, 919, 1614, 1702, 2111, 2854, 2979
MaeI	CTAG	9 cut(s)	870, 962, 1608, 1691, 1835, 2036, 2298, 2463, 2853
MaeII	ACGT	4 cut(s)	643, 2389, 2557, 2692
MaeIII	GTNAC	5 cut(s)	107, 329, 433, 639, 2197
MfeI	CAATTG	2 cut(s)	864, 1734
MflI	RGATCY	2 cut(s)	894, 1995
MhlI	GDGCHC	5 cut(s)	178, 1330, 1542, 2817, 2860
MlsI	TGGCCA	3 cut(s)	125, 1706, 2439
MluNI	TGGCCA	3 cut(s)	125, 1706, 2439
Mly113I	GGCGCC	1 cut(s)	2130
MlyI	GAGTC	3 cut(s)	837, 1693, 3048
MmeI	TCCRAC	7 cut(s)	363, 856, 1120, 1454, 1633, 2030, 2437
Mox20I	TGGCCA	3 cut(s)	125, 1706, 2439
Mph1103I	ATGCAT	1 cut(s)	2104
MroXI	GAANNNNTTC	3 cut(s)	236, 481, 2340
MscI	TGGCCA	3 cut(s)	125, 1706, 2439
MseI	TTAA	8 cut(s)	36, 408, 1118, 1241, 1640, 1887, 2409, 2418
MslI	CAYNNNNRTG	1 cut(s)	2975
Msp20I	TGGCCA	3 cut(s)	125, 1706, 2439
MspA1I	CMGCKG	3 cut(s)	326, 500, 631
MspCI	CTTAAG	1 cut(s)	1240
MspI	CCGG	6 cut(s)	117, 195, 1228, 1416, 1899, 2309
MspR9I	CCNGG	7 cut(s)	454, 587, 659, 668, 1417, 2192, 2309
MunI	CAATTG	2 cut(s)	864, 1734
Mva1269I	GAATGC	1 cut(s)	236
MvaI	CCWGG	5 cut(s)	454, 587, 659, 668, 2192
NarI	GGCGCC	1 cut(s)	2130
NciI	CCSGG	2 cut(s)	1417, 2309
NcoI	CCATGG	1 cut(s)	1491
NdeI	CATATG	1 cut(s)	43
NlaIV	GGNNCC	9 cut(s)	304, 672, 1127, 1247, 1396, 2054, 2131, 2823, 2915
NmuCI	GTSAC	1 cut(s)	433
NsiI	ATGCAT	1 cut(s)	2104
NspI	RCATGY	1 cut(s)	2369
NspV	TTCGAA	1 cut(s)	1963
PaeR7I	CTCGAG	2 cut(s)	1323, 1681
PagI	TCATGA	2 cut(s)	1078, 2907
PcsI	WCGNNNNNNNCGW	2 cut(s)	1177, 1186
PctI	GAATGC	1 cut(s)	236
PdmI	GAANNNNTTC	3 cut(s)	236, 481, 2340
PfeI	GAWTC	4 cut(s)	1159, 1756, 2427, 2870
PflMI	CCANNNNNTGG	2 cut(s)	1135, 2522
PleI	GAGTC	3 cut(s)	836, 1692, 3048
PluTI	GGCGCC	1 cut(s)	2133
PpsI	GAGTC	3 cut(s)	836, 1692, 3048
Ppu21I	YACGTR	2 cut(s)	644, 2693
PpuMI	RGGWCCY	1 cut(s)	2821
PshBI	ATTAAT	1 cut(s)	1118
Psp124BI	GAGCTC	1 cut(s)	1330
Psp5II	RGGWCCY	1 cut(s)	2821
Psp6I	CCWGG	5 cut(s)	452, 585, 657, 666, 2190
PspFI	CCCAGC	3 cut(s)	496, 1100, 1535
PspGI	CCWGG	5 cut(s)	452, 585, 657, 666, 2190
PspN4I	GGNNCC	9 cut(s)	304, 672, 1127, 1247, 1396, 2054, 2131, 2823, 2915
PspPI	GGNCC	9 cut(s)	61, 303, 376, 655, 1377, 1427, 2188, 2821, 2914
PspPPI	RGGWCCY	1 cut(s)	2821
PspXI	VCTCGAGB	2 cut(s)	1323, 1681
PsrI	GAACNNNNNNTAC	2 cut(s)	1238, 1270
PstI	CTGCAG	4 cut(s)	630, 754, 763, 1764
PstNI	CAGNNNCTG	2 cut(s)	758, 1715
PsuI	RGATCY	2 cut(s)	894, 1995
PvuII	CAGCTG	3 cut(s)	326, 500, 631
RsaI	GTAC	9 cut(s)	27, 148, 1262, 1267, 1410, 2434, 2695, 2738, 2883
RsaNI	GTAC	9 cut(s)	26, 147, 1261, 1266, 1409, 2433, 2694, 2737, 2882
RseI	CAYNNNNRTG	1 cut(s)	2975
SacI	GAGCTC	1 cut(s)	1330
SaqAI	TTAA	8 cut(s)	36, 408, 1118, 1241, 1640, 1887, 2409, 2418
Sau96I	GGNCC	9 cut(s)	61, 303, 376, 655, 1377, 1427, 2188, 2821, 2914
ScaI	AGTACT	2 cut(s)	1267, 1410
SchI	GAGTC	3 cut(s)	837, 1693, 3048
ScrFI	CCNGG	7 cut(s)	454, 587, 659, 668, 1417, 2192, 2309
SduI	GDGCHC	5 cut(s)	178, 1330, 1542, 2817, 2860
SfaNI	GCATC	8 cut(s)	70, 715, 919, 1614, 1702, 2111, 2854, 2979
SfcI	CTRYAG	7 cut(s)	626, 750, 759, 990, 1548, 1760, 2799
SfiI	GGCCNNNNNGGCC	1 cut(s)	122
SfoI	GGCGCC	1 cut(s)	2131
Sfr274I	CTCGAG	2 cut(s)	1323, 1681
SfuI	TTCGAA	1 cut(s)	1963
SinI	GGWCC	4 cut(s)	376, 1427, 2188, 2821
SlaI	CTCGAG	2 cut(s)	1323, 1681
SmiMI	CAYNNNNRTG	1 cut(s)	2975
SmlI	CTYRAG	6 cut(s)	425, 698, 1240, 1323, 1681, 2816
SmoI	CTYRAG	6 cut(s)	425, 698, 1240, 1323, 1681, 2816
SpeI	ACTAGT	1 cut(s)	2852
SsiI	CCGC	3 cut(s)	525, 1731, 3031
SspDI	GGCGCC	1 cut(s)	2129
SspMI	CTAG	9 cut(s)	870, 962, 1608, 1691, 1835, 2036, 2298, 2463, 2853
SstI	GAGCTC	1 cut(s)	1330
StyD4I	CCNGG	7 cut(s)	452, 585, 657, 666, 1415, 2190, 2307
StyI	CCWWGG	3 cut(s)	1331, 1491, 1911
TaaI	ACNGT	9 cut(s)	34, 511, 550, 991, 1265, 1969, 2224, 2926, 2942
TaiI	ACGT	4 cut(s)	646, 2392, 2560, 2695
TaqI	TCGA	9 cut(s)	1324, 1682, 1963, 2370, 2499, 2554, 2634, 2682, 3050
TaqII	GACCGA	1 cut(s)	1415
TatI	WGTACW	4 cut(s)	1260, 1265, 1408, 2881
TauI	GCSGC	2 cut(s)	528, 3033
TfiI	GAWTC	4 cut(s)	1159, 1756, 2427, 2870
Tru1I	TTAA	8 cut(s)	36, 408, 1118, 1241, 1640, 1887, 2409, 2418
Tru9I	TTAA	8 cut(s)	36, 408, 1118, 1241, 1640, 1887, 2409, 2418
TscAI	CASTG	6 cut(s)	535, 630, 1782, 1912, 2865, 2901
TseFI	GTSAC	1 cut(s)	433
Tsp45I	GTSAC	1 cut(s)	433
TspGWI	ACGGA	2 cut(s)	43, 2420
TspRI	CASTG	6 cut(s)	535, 630, 1782, 1912, 2865, 2901
Van91I	CCANNNNNTGG	2 cut(s)	1135, 2522
Vha464I	CTTAAG	1 cut(s)	1240
VneI	GTGCAC	1 cut(s)	2856
VpaK11BI	GGWCC	4 cut(s)	376, 1427, 2188, 2821
VspI	ATTAAT	1 cut(s)	1118
XapI	RAATTY	2 cut(s)	67, 478
XbaI	TCTAGA	1 cut(s)	961
XceI	RCATGY	1 cut(s)	2369
XcmI	CCANNNNNNNNNTGG	4 cut(s)	1136, 1265, 2453, 2857
XhoI	CTCGAG	2 cut(s)	1323, 1681
XmnI	GAANNNNTTC	3 cut(s)	236, 481, 2340
XspI	CTAG	9 cut(s)	870, 962, 1608, 1691, 1835, 2036, 2298, 2463, 2853
ZraI	GACGTC	1 cut(s)	2558
ZrmI	AGTACT	2 cut(s)	1267, 1410
Zsp2I	ATGCAT	1 cut(s)	2104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.