Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0009778

Physical Location & Seq

Genomic Coordinates Reverse (-)

3661736 .. 3669609

Gene Structure 7874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1049600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3753 bp

ATGGCGGAGACAGCGGCGGAGGCGAAGACATTGCCGGAGGCGGAGAAGAAGAAGGAGCAGAGCCTGCCGTTTTTCCAGCTCTTCTCCTTTGCAGACAAGTACGATTGGATGCTCATGATCTTCGGAAGCTTGGGCGCCGTCGTGCACGGCTCCTCCATGCCGCTGTTCTTCCTCATGTTCGGCGAAATGGTTAACGGGTTCGGAGAAAACCAAATGAATTTGCAGAAAATGACCGCCGAAGTAGCAAAGTACGCTTTGTACTTTGTGTATCTCGGTCTCATAGTATGCGTAACATCCTACGCAGAAATTGCATGCTGGATGTACACCGGTGAGAGGCAGGTGAGCACGCTGAGGAAGAAGTATCTGGAGGCGGTGCTGAAACAGGACGTCGGCTTCTTCGACACGGACGCCAGAACTGGGGACATTGTCTTCAGTATCTCGACGGACACTCTTCTGGTCCAAGATGCCATCAGCGAGAAGGTGGGGAACTTCATACACTATCTATCTACATTTCTGGCAGGCCTGGTGGTAGGGTTTGTATCAGCATGGAGGCTGGCGCTGCTGAGTATTGCCGTGATTCCCGGAATAGTTTTTGCCGGCGGCTTATATGCCTATACACTCACCGGCCTCACGTCCAAGAGTCGCCAGTCGTATGCAAATGCAGGGATAGTGGCTGATCAGGCCATTGCGCAAGTTCGGACAGTTTATTCCTATGTTGGTGAAAGCAAGGCCCTCAATTCGTATTCGGATGCCATACAGAACACTTTGCAGCTTGGTTACAAGGCCGGAATGGCCAAAGGTCTTGGCCTAGGGTGCACCTACGGCATTGCTTGTATGTCATGGGCACTTGTTTACTGGTACGCTGGTGTGTTTATCCGAAATGGGCAGACTGATGGAGGGAAAGCGTTCACTGCCATTTTCTCAGCCATTGTTGGTGGCATAAGCTTGGGTCAGTCATTTTCGAACCTTGGGGCCTTTAGCAAAGGTAAATCAGCTGGATACAAGTTGATGGAGATAATTAAGCAAAAGCCAACCATAGTTCAAGACCCCTTGGAAGGAAAGTGCTTATCGGATGTTAGTGGTAATATAGAATTCAAGGAAGTAACCTTCAGCTACCCTTCGAGGCCAGATGTTATTATCTTCCGAAATTTTTCAATCTTCTTTCCAGCCGGGAAGACTGTCGCTGTTGTTGGTGGCAGTGGTTCAGGGAAGAGCACTGTTGTCTCTCTAATCGAAAGGTTCTACGATCCTAACCAGGGGCAGGTTTTGATCGATAGCGTGGACATAAAAACGCTGCAATTGAAATGGTTGCGCGATCAGATTGGGCTGGTAAACCAGGAACCGGCACTCTTTGCAACTACGATACTCGAGAACATTCTCTATGGAAAGCCCGACGCAACAATGGAAGACGTTGAAGTTGCGGCCTCCTCAGCGAATGCTCACAGTTTCATCACCTTGCTTCCAAAGGGATATAACACTCAGGTAGGAGAGCGAGGAGTTCAACTCTCTGGTGGTCAAAAGCAGAGGATTGCAATTGCCAGAGCTATGTTGAAAAATCCAAAGATCCTCCTCCTTGACGAAGCTACCAGCGCCCTGGATGCAAGCTCAGAGAGCATTGTTCAAGAAGCTCTGGATCGTCTCATGGTCGGAAGGACAACTGTTATTGTGGCACATCGCCTTTCCACTATTAGAAATGTTGATAGCATTGCAGTTATACAACAAGGCCAAGTTGTCGAGACAGGTACACATGAAGAACTGATTGCTAAAGCAGGGGCATATGCTTCTCTAATTCGATTCCAAGAGATGGTTGGGAACAGAGACTTCAGGAACCCATCGACTCGCTGCTCTCGTTCATCACGTCTAAGCCACTCATTGTCAACGAAGTCTTTAAGCCTCCGGTCTGGCAGCTTAAGGAACCTGAGCTATTCGTACAGTACGGGTGCTGATGGGCGGATAGAGATGATTTCAAATGCTGAAACAGACAGGAAAACTCGAGCTCCTAAGAACTATTTCTTCCGGCTTCTGAAGCTAAACGCTCCCGAATGGCCCTATTCAATAATGGCCGCTATAGGATCACTACTCTCCGGGTTTATCGGTCCAACATTTGCTATTCTAATGGGCAACATGATTGAGGTTTTCTACTATAGAAATCCTGCCTCAATGGAAAGGAAGACAAAGGAATATGTTTTCATGTACGTTGGAGTGGGACTATACGCAGTGGTTGCGTATTTGATACAGCATTACTTCTGCAGCATCATGGGAGAGAACCTCACTACTAGAGTGAGAAGGATGATGCTTGCAGCAATCTTGAGGAATGAAGTTGGATGGTTTGATGAGGAGGAGCACAACTCTAACCTTCTAACAGCTAAATTGGCGACGGATGCTGCTGATGTGAAATCAGCTGTTTCTGAGAGGATATCTGTGATATTGCAGAACATGACTTCACTCCTCACTTCATTCATTGTTGCCTTCATAGTGGAATGGAGAGTCTCCCTGCTCATTTTAGCAACCTTCCCTCTTCTGGTGCTAGCCAACTTTGCTCAGCAACTTTCTTTGAAGGGCTTTGCTGGAGACACAGCCAAGGCTCATGCAAAGACGAGCATGATTGCTGGGGAGGGAGTGAGCAACATTCGGACAGTCGCCGCCTTCAATGCCCAAAACAAGATCCTATCTCTGTTCTGCCACGAGCTCCGTCTCCCACTGCTGGGAAGCCTCCGCCGCAGCCAAACTGCTGGCGTCCTATTTGGCCTCTCTCAGTTTGCTCTCCATGCCTCTGAAGCTCTCATTTTGTGGTATGGTGCCCACCTCGTTAGCAAAGGTGTCTCCACCTTCTCGAAAGTTATTAAGGTTTTCATTGTCCTTGTTGTAACGGCGAATTCAGTTGCTGAAACTGTCAGCCTTGCCCCGGAGATTATCAGGGGCGGTGAAGCAGTTGGTTCGGTATTTTCAATCCTTGATCGTCAAACAAGGATTGACCCGGATGATCCTGAGGCTGAGGTGGTTGAATCAGTTCGCGGAGAAATTGAACTTAGGCATGTTGATTTTGCATATCCATCGCGACCTGATATCATGGTGTTCAAAGATTTTAGTCTCAGAATCCGTACTGGCCACAGCCAAGCGCTTGTCGGAGTTAGTGGTTCGGGAAAGAGTTCTGTGATTGCATTGATCGAGCGATTTTATGATCCATTAGTTGGGAAAGTAATGATCGATGGCAAGGACATCCGCCGGTTGAACTTGAAGTCTCTTCGGTTGAAAATTGGACTGGTGCAACAAGAACCAGCCCTGTTTGCAGCAAGCATCTTTGAAAACATTGCCTACGGCAAAGAAGGCGCAACCGAAGCAGAAGTAATCGAAGCTGCACGTACTGCTAACGTGCATGGTTTCGTTAGCGGATTGCCTGATGGATACAAAACCCCGGTTGGGGAGCGAGGAGTTCAGCTCTCTGGCGGACAGAAACAAAGAATTGCAATAGCAAGGGCGGTGCTCAAGGACCCTAGAATACTCTTGCTAGATGAGGCCACAAGTGCACTTGATGCTGAATCAGAATGTGTGTTGCAAGAAGCACTTGAGAGGCTAATGAAGGGCCGCACCACCGTGCTAGTTGCCCACCGTTTATCGACAATTAGAGGGGTGGACAGCATTGGCGTGGTGCAAGACGGGCGCATTGTGGAACACGGCAGCCATTCGGAACTAGTGAGCCGCCCCGACGGAGCTTACTCAAGGCTGTTGCAGCTGCAAAATCATCACGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0008150 GO:0008361 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009639 GO:0009640 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009908 GO:0009914 GO:0009926 GO:0009958 GO:0009966 GO:0009987 GO:0010033 GO:0010218 GO:0010315 GO:0010329 GO:0010540 GO:0010541 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0016043 GO:0022414 GO:0022622 GO:0022857 GO:0023051 GO:0032501 GO:0032502 GO:0032535 GO:0042221 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0044464 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048527 GO:0048528 GO:0048583 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080161 GO:0090066 GO:0090567 GO:0090691 GO:0090696 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1251

Amino Acids

136.52

Weight (kDa)

8.65

Isoelectric Point (pI)

33.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	40 - 311	1e-52	ABC transporter transmembrane region
ABC_tran	PF00005	382 - 530	9.8e-32	ABC transporter
ABC_membrane	PF00664	686 - 957	4.2e-47	ABC transporter transmembrane region
ABC_tran	PF00005	1027 - 1175	1.1e-29	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0009778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28860
fragaria_vesca	FvH4_6g48960 FvH4_6g48960 FvH4_6g48960 FvH4_6g48960 FvH4_6g48960
malus_domestica	MD09G1049400.v1.1 MD17G1049500.v1.1 MD17G1049600.v1.1
prunus_persica	Prupe.3G269400_v2.0.a1 Prupe.3G269400_v2.0.a1
pyrus_communis	pycom111g04040 pycom17g04450
rosa_chinensis	RchiOBHm_Chr2g0168761
rosa_laevigata	RLG00000021808
rosa_multiflora	Rmu_ssc0000393.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082690
rosa_rugosa	Rorug02G0535300
rosa_samantha	Rh2BG619000 Rh2DG629700
rosa_wichuraiana	Rw2G050250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	328
AatII	GACGTC	1 cut(s)	390
Acc16I	TGCGCA	1 cut(s)	690
Acc36I	ACCTGC	2 cut(s)	328, 1252
AccB1I	GGYRCC	2 cut(s)	134, 2798
AccB7I	CCANNNNNTGG	2 cut(s)	1804, 3191
AccII	CGCG	3 cut(s)	1314, 3015, 3058
AclWI	GGATC	7 cut(s)	1241, 1558, 1641, 2080, 2659, 2978, 3176
AcoI	YGGCCR	3 cut(s)	792, 2061, 3106
AcsI	RAATTY	4 cut(s)	217, 1091, 1147, 2875
AcuI	CTGAAG	5 cut(s)	415, 1093, 1807, 2045, 2796
AcyI	GRCGYC	4 cut(s)	135, 387, 408, 2736
AfeI	AGCGCT	1 cut(s)	3120
AflII	CTTAAG	1 cut(s)	1909
AgeI	ACCGGT	1 cut(s)	326
AhlI	ACTAGT	1 cut(s)	3691
AjiI	CACGTC	2 cut(s)	633, 1859
AjnI	CCWGG	4 cut(s)	522, 1254, 1335, 1593
AleI	CACNNNNGTG	1 cut(s)	3593
Alw21I	GWGCWC	9 cut(s)	147, 347, 818, 1217, 1999, 2346, 2691, 3486, 3529
Alw44I	GTGCAC	3 cut(s)	143, 814, 3525
AlwI	GGATC	7 cut(s)	1241, 1558, 1641, 2080, 2659, 2978, 3176
AlwNI	CAGNNNCTG	2 cut(s)	64, 2885
Ama87I	CYCGRG	2 cut(s)	1367, 1992
Aor51HI	AGCGCT	1 cut(s)	3120
ApaLI	GTGCAC	3 cut(s)	143, 814, 3525
ApoI	RAATTY	4 cut(s)	217, 1091, 1147, 2875
AsiGI	ACCGGT	1 cut(s)	326
Asp700I	GAANNNNTTC	5 cut(s)	905, 1150, 2009, 3009, 3148
AspA2I	CCTAGG	1 cut(s)	808
AspLEI	GCGC	8 cut(s)	137, 559, 691, 1314, 1592, 3121, 3332, 3663
AspS9I	GGNCC	7 cut(s)	457, 730, 972, 2046, 2096, 3490, 3583
AsuC2I	CCSGG	6 cut(s)	582, 1171, 2086, 2906, 2978, 3416
AsuHPI	GGTGA	6 cut(s)	341, 352, 613, 731, 1444, 2936
AsuII	TTCGAA	1 cut(s)	962
AsuNHI	GCTAGC	1 cut(s)	2527
AvaI	CYCGRG	2 cut(s)	1367, 1992
AvaII	GGWCC	3 cut(s)	457, 2096, 3490
AvrII	CCTAGG	1 cut(s)	808
AxyI	CCTNAGG	1 cut(s)	2988
BaeGI	GKGCMC	5 cut(s)	147, 818, 847, 2803, 3529
BaeI	ACNNNNGTAYC	2 cut(s)	850, 883
BalI	TGGCCA	2 cut(s)	794, 3108
BanI	GGYRCC	2 cut(s)	134, 2798
BanII	GRGCYC	2 cut(s)	1999, 2691
BauI	CACGAG	1 cut(s)	2684
BbsI	GAAGAC	5 cut(s)	32, 421, 1181, 1413, 2177
Bbv12I	GWGCWC	9 cut(s)	147, 347, 818, 1217, 1999, 2346, 2691, 3486, 3529
BbvCI	CCTCAGC	3 cut(s)	350, 1429, 2994
BceAI	ACGGC	8 cut(s)	52, 122, 163, 557, 838, 2886, 3334, 3691
BcgI	CGANNNNNNTGC	6 cut(s)	13, 47, 2919, 2953, 3036, 3070
BciT130I	CCWGG	4 cut(s)	524, 1256, 1337, 1595
BciVI	GTATCC	2 cut(s)	992, 3398
BclI	TGATCA	1 cut(s)	676
BcnI	CCSGG	6 cut(s)	582, 1171, 2086, 2906, 2978, 3416
BcuI	ACTAGT	1 cut(s)	3691
BfaI	CTAG	7 cut(s)	809, 2277, 2528, 3495, 3509, 3599, 3692
BfmI	CTRYAG	3 cut(s)	2067, 2143, 2248
BfoI	RGCGCY	4 cut(s)	138, 560, 1593, 3122
BfrI	CTTAAG	1 cut(s)	1909
BfuAI	ACCTGC	2 cut(s)	328, 1252
BfuI	GTATCC	2 cut(s)	992, 3398
BglI	GCCNNNNNGGC	1 cut(s)	791
BlnI	CCTAGG	1 cut(s)	808
BlpI	GCTNAGC	1 cut(s)	2541
Bme18I	GGWCC	3 cut(s)	457, 2096, 3490
BmeT110I	CYCGRG	2 cut(s)	1367, 1992
BmgBI	CACGTC	2 cut(s)	633, 1859
BmgT120I	GGNCC	7 cut(s)	457, 730, 972, 2046, 2096, 3490, 3583
BmiI	GGNNCC	8 cut(s)	136, 151, 973, 1341, 1829, 1916, 2800, 3492
BmrI	ACTGGG	1 cut(s)	426
BmsI	GCATC	9 cut(s)	99, 454, 739, 1588, 2262, 2283, 2371, 3306, 3523
BmtI	GCTAGC	1 cut(s)	2531
BmuI	ACTGGG	1 cut(s)	426
BpiI	GAAGAC	5 cut(s)	32, 421, 1181, 1413, 2177
BplI	GAGNNNNNCTC	8 cut(s)	1488, 1520, 2253, 2285, 2333, 2365, 3423, 3455
BpmI	CTGGAG	2 cut(s)	386, 2589
Bpu10I	CCTNAGC	4 cut(s)	350, 1429, 1919, 2994
Bpu1102I	GCTNAGC	1 cut(s)	2541
Bpu14I	TTCGAA	1 cut(s)	962
BpuEI	CTTGAG	4 cut(s)	2329, 3470, 3587, 3703
BpuMI	CCSGG	6 cut(s)	582, 1171, 2086, 2906, 2978, 3416
Bsa29I	ATCGAT	2 cut(s)	1272, 3207
BsaAI	YACGTR	2 cut(s)	3362, 3748
BsaHI	GRCGYC	4 cut(s)	135, 387, 408, 2736
BsaI	GGTCTC	1 cut(s)	281
BsaJI	CCNNGG	8 cut(s)	808, 967, 1050, 1255, 1593, 2580, 2904, 3414
BsaWI	WCCGGW	2 cut(s)	326, 1896
BsaXI	ACNNNNNCTCC	4 cut(s)	137, 167, 1981, 2011
Bse118I	RCCGGY	5 cut(s)	326, 596, 623, 1342, 3225
Bse1I	ACTGG	5 cut(s)	421, 646, 860, 3109, 3267
Bse21I	CCTNAGG	1 cut(s)	2988
Bse3DI	GCAATG	5 cut(s)	29, 684, 825, 1704, 3309
BseBI	CCWGG	4 cut(s)	524, 1256, 1337, 1595
BseCI	ATCGAT	2 cut(s)	1272, 3207
BseDI	CCNNGG	8 cut(s)	808, 967, 1050, 1255, 1593, 2580, 2904, 3414
BseMI	GCAATG	5 cut(s)	29, 684, 825, 1704, 3309
BseNI	ACTGG	5 cut(s)	421, 646, 860, 3109, 3267
BseRI	GAGGAG	8 cut(s)	142, 1417, 1509, 1559, 2351, 2354, 2438, 3444
BseSI	GKGCMC	5 cut(s)	147, 818, 847, 2803, 3529
BseYI	CCCAGC	2 cut(s)	2609, 2704
BsgI	GTGCAG	1 cut(s)	3342
Bsh1236I	CGCG	3 cut(s)	1314, 3015, 3058
BshNI	GGYRCC	2 cut(s)	134, 2798
BshTI	ACCGGT	1 cut(s)	326
BshVI	ATCGAT	2 cut(s)	1272, 3207
BsiHKAI	GWGCWC	9 cut(s)	147, 347, 818, 1217, 1999, 2346, 2691, 3486, 3529
BsiHKCI	CYCGRG	2 cut(s)	1367, 1992
BslFI	GGGAC	2 cut(s)	434, 2220
BsmBI	CGTCTC	2 cut(s)	1643, 2699
BsmFI	GGGAC	2 cut(s)	434, 2220
BsmI	GAATGC	1 cut(s)	1441
Bso31I	GGTCTC	1 cut(s)	281
BsoBI	CYCGRG	2 cut(s)	1367, 1992
Bsp119I	TTCGAA	1 cut(s)	962
Bsp1407I	TGTACA	1 cut(s)	321
Bsp1720I	GCTNAGC	1 cut(s)	2541
Bsp68I	TCGCGA	1 cut(s)	3058
BspDI	ATCGAT	2 cut(s)	1272, 3207
BspFNI	CGCG	3 cut(s)	1314, 3015, 3058
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	8 cut(s)	136, 151, 973, 1341, 1829, 1916, 2800, 3492
BspMAI	CTGCAG	1 cut(s)	2252
BspMI	ACCTGC	2 cut(s)	328, 1252
BspOI	GCTAGC	1 cut(s)	2531
BspPI	GGATC	7 cut(s)	1241, 1558, 1641, 2080, 2659, 2978, 3176
BspQI	GCTCTTC	2 cut(s)	86, 1205
BspT104I	TTCGAA	1 cut(s)	962
BspT107I	GGYRCC	2 cut(s)	134, 2798
BspTI	CTTAAG	1 cut(s)	1909
BspTNI	GGTCTC	1 cut(s)	281
BsrDI	GCAATG	5 cut(s)	29, 684, 825, 1704, 3309
BsrFI	RCCGGY	5 cut(s)	326, 596, 623, 1342, 3225
BsrGI	TGTACA	1 cut(s)	321
BsrI	ACTGG	5 cut(s)	421, 646, 860, 3109, 3267
BssAI	RCCGGY	5 cut(s)	326, 596, 623, 1342, 3225
BssECI	CCNNGG	8 cut(s)	808, 967, 1050, 1255, 1593, 2580, 2904, 3414
BssNI	GRCGYC	4 cut(s)	135, 387, 408, 2736
BssSI	CACGAG	1 cut(s)	2684
BssT1I	CCWWGG	4 cut(s)	808, 967, 1050, 2580
Bst2BI	CACGAG	1 cut(s)	2684
Bst2UI	CCWGG	4 cut(s)	524, 1256, 1337, 1595
Bst6I	CTCTTC	5 cut(s)	86, 456, 1205, 2523, 3249
BstACI	GRCGYC	4 cut(s)	135, 387, 408, 2736
BstAFI	CTTAAG	1 cut(s)	1909
BstAPI	GCANNNNNTGC	6 cut(s)	64, 308, 1352, 2222, 3365, 3533
BstAUI	TGTACA	1 cut(s)	321
BstBAI	YACGTR	2 cut(s)	3362, 3748
BstBI	TTCGAA	1 cut(s)	962
BstFNI	CGCG	3 cut(s)	1314, 3015, 3058
BstH2I	RGCGCY	4 cut(s)	138, 560, 1593, 3122
BstHHI	GCGC	8 cut(s)	137, 559, 691, 1314, 1592, 3121, 3332, 3663
BstNI	CCWGG	4 cut(s)	524, 1256, 1337, 1595
BstNSI	RCATGY	2 cut(s)	315, 3038
BstSFI	CTRYAG	3 cut(s)	2067, 2143, 2248
BstSLI	GKGCMC	5 cut(s)	147, 818, 847, 2803, 3529
BstUI	CGCG	3 cut(s)	1314, 3015, 3058
BstV2I	GAAGAC	5 cut(s)	32, 421, 1181, 1413, 2177
BstX2I	RGATCY	2 cut(s)	1563, 2664
BstXI	CCANNNNNNTGG	2 cut(s)	1594, 2732
BstYI	RGATCY	2 cut(s)	1563, 2664
Bsu15I	ATCGAT	2 cut(s)	1272, 3207
Bsu36I	CCTNAGG	1 cut(s)	2988
BsuI	GTATCC	2 cut(s)	992, 3398
BsuTUI	ATCGAT	2 cut(s)	1272, 3207
BtgZI	GCGATG	2 cut(s)	1658, 3039
BtrI	CACGTC	2 cut(s)	633, 1859
BtsI	GCAGTG	4 cut(s)	909, 1204, 2223, 2699
BtsIMutI	CAGTG	5 cut(s)	909, 1204, 1215, 2223, 2699
BtuMI	TCGCGA	1 cut(s)	3058
BveI	ACCTGC	2 cut(s)	328, 1252
CaiI	CAGNNNCTG	2 cut(s)	64, 2885
CciI	TCATGA	1 cut(s)	114
CfoI	GCGC	8 cut(s)	137, 559, 691, 1314, 1592, 3121, 3332, 3663
Cfr10I	RCCGGY	5 cut(s)	326, 596, 623, 1342, 3225
Cfr13I	GGNCC	7 cut(s)	457, 730, 972, 2046, 2096, 3490, 3583
ClaI	ATCGAT	2 cut(s)	1272, 3207
CseI	GACGC	3 cut(s)	416, 1403, 2725
CspAI	ACCGGT	1 cut(s)	326
DinI	GGCGCC	1 cut(s)	136
EaeI	YGGCCR	3 cut(s)	792, 2061, 3106
Eam1104I	CTCTTC	5 cut(s)	86, 456, 1205, 2523, 3249
EarI	CTCTTC	5 cut(s)	86, 456, 1205, 2523, 3249
EciI	GGCGGA	7 cut(s)	20, 32, 56, 1966, 2705, 3212, 3462
Ecl136II	GAGCTC	2 cut(s)	1997, 2689
Eco130I	CCWWGG	4 cut(s)	808, 967, 1050, 2580
Eco147I	AGGCCT	1 cut(s)	522
Eco24I	GRGCYC	2 cut(s)	1999, 2691
Eco31I	GGTCTC	1 cut(s)	281
Eco32I	GATATC	2 cut(s)	2418, 3067
Eco47I	GGWCC	3 cut(s)	457, 2096, 3490
Eco47III	AGCGCT	1 cut(s)	3120
Eco53kI	GAGCTC	2 cut(s)	1997, 2689
Eco57I	CTGAAG	5 cut(s)	415, 1093, 1807, 2045, 2796
Eco81I	CCTNAGG	1 cut(s)	2988
Eco88I	CYCGRG	2 cut(s)	1367, 1992
EcoICRI	GAGCTC	2 cut(s)	1997, 2689
EcoO109I	RGGNCCY	3 cut(s)	730, 972, 3490
EcoRI	GAATTC	2 cut(s)	1091, 2875
EcoRII	CCWGG	4 cut(s)	522, 1254, 1335, 1593
EcoRV	GATATC	2 cut(s)	2418, 3067
EcoT14I	CCWWGG	4 cut(s)	808, 967, 1050, 2580
EcoT38I	GRGCYC	2 cut(s)	1999, 2691
EgeI	GGCGCC	1 cut(s)	136
EheI	GGCGCC	1 cut(s)	136
ErhI	CCWWGG	4 cut(s)	808, 967, 1050, 2580
Esp3I	CGTCTC	2 cut(s)	1643, 2699
FalI	AAGNNNNNCTT	2 cut(s)	3549, 3581
FaqI	GGGAC	2 cut(s)	434, 2220
FauNDI	CATATG	1 cut(s)	1777
FbaI	TGATCA	1 cut(s)	676
FriOI	GRGCYC	2 cut(s)	1999, 2691
FspBI	CTAG	7 cut(s)	809, 2277, 2528, 3495, 3509, 3599, 3692
FspI	TGCGCA	1 cut(s)	690
GlaI	GCGC	8 cut(s)	136, 558, 690, 1313, 1591, 3120, 3331, 3662
GsaI	CCCAGC	2 cut(s)	2613, 2708
GsuI	CTGGAG	2 cut(s)	386, 2589
HaeII	RGCGCY	4 cut(s)	138, 560, 1593, 3122
HgaI	GACGC	3 cut(s)	416, 1403, 2725
HhaI	GCGC	8 cut(s)	137, 559, 691, 1314, 1592, 3121, 3332, 3663
Hin1I	GRCGYC	4 cut(s)	135, 387, 408, 2736
Hin6I	GCGC	8 cut(s)	135, 557, 689, 1312, 1590, 3119, 3330, 3661
HinP1I	GCGC	8 cut(s)	135, 557, 689, 1312, 1590, 3119, 3330, 3661
HincII	GTYRAC	2 cut(s)	193, 1878
HindII	GTYRAC	2 cut(s)	193, 1878
HindIII	AAGCTT	2 cut(s)	127, 943
HinfI	GANTC	8 cut(s)	577, 640, 1794, 1837, 2487, 3005, 3096, 3539
HpaI	GTTAAC	1 cut(s)	193
HphI	GGTGA	6 cut(s)	341, 352, 613, 731, 1444, 2936
Hpy99I	CGWCG	6 cut(s)	143, 392, 445, 1397, 2380, 3710
HpyCH4IV	ACGT	8 cut(s)	387, 632, 1410, 1858, 2196, 3361, 3372, 3747
HpySE526I	ACGT	8 cut(s)	387, 632, 1410, 1858, 2196, 3361, 3372, 3747
Hsp92I	GRCGYC	4 cut(s)	135, 387, 408, 2736
HspAI	GCGC	8 cut(s)	135, 557, 689, 1312, 1590, 3119, 3330, 3661
KasI	GGCGCC	1 cut(s)	134
KroI	GCCGGC	1 cut(s)	596
KroNI	GCCGGC	1 cut(s)	598
Ksp22I	TGATCA	1 cut(s)	676
KspAI	GTTAAC	1 cut(s)	193
LguI	GCTCTTC	2 cut(s)	86, 1205
LmnI	GCTCC	8 cut(s)	55, 155, 2002, 2041, 2341, 2694, 3424, 3710
LweI	GCATC	9 cut(s)	99, 454, 739, 1588, 2262, 2283, 2371, 3306, 3523
MaeI	CTAG	7 cut(s)	809, 2277, 2528, 3495, 3509, 3599, 3692
MaeII	ACGT	8 cut(s)	387, 632, 1410, 1858, 2196, 3361, 3372, 3747
MaeIII	GTNAC	4 cut(s)	289, 776, 1102, 2866
MfeI	CAATTG	2 cut(s)	1298, 1533
MflI	RGATCY	2 cut(s)	1563, 2664
MlsI	TGGCCA	2 cut(s)	794, 3108
MluNI	TGGCCA	2 cut(s)	794, 3108
Mly113I	GGCGCC	1 cut(s)	135
MlyI	GAGTC	3 cut(s)	649, 1831, 2496
MmeI	TCCRAC	5 cut(s)	1627, 2123, 2179, 2302, 3106
Mox20I	TGGCCA	2 cut(s)	794, 3108
MroNI	GCCGGC	1 cut(s)	596
MroXI	GAANNNNTTC	5 cut(s)	905, 1150, 2009, 3009, 3148
MscI	TGGCCA	2 cut(s)	794, 3108
MseI	TTAA	5 cut(s)	192, 1020, 1889, 1910, 2844
MslI	CAYNNNNRTG	2 cut(s)	3593, 3644
Msp20I	TGGCCA	2 cut(s)	794, 3108
MspA1I	CMGCKG	5 cut(s)	14, 163, 995, 2402, 3733
MspCI	CTTAAG	1 cut(s)	1909
MunI	CAATTG	2 cut(s)	1298, 1533
Mva1269I	GAATGC	1 cut(s)	1441
MvaI	CCWGG	4 cut(s)	524, 1256, 1337, 1595
MvnI	CGCG	3 cut(s)	1314, 3015, 3058
NaeI	GCCGGC	1 cut(s)	598
NarI	GGCGCC	1 cut(s)	135
NciI	CCSGG	6 cut(s)	582, 1171, 2086, 2906, 2978, 3416
NdeI	CATATG	1 cut(s)	1777
NgoMIV	GCCGGC	1 cut(s)	596
NheI	GCTAGC	1 cut(s)	2527
NlaIV	GGNNCC	8 cut(s)	136, 151, 973, 1341, 1829, 1916, 2800, 3492
NruI	TCGCGA	1 cut(s)	3058
NsbI	TGCGCA	1 cut(s)	690
NspI	RCATGY	2 cut(s)	315, 3038
NspV	TTCGAA	1 cut(s)	962
OliI	CACNNNNGTG	1 cut(s)	3593
PaeI	GCATGC	1 cut(s)	315
PaeR7I	CTCGAG	2 cut(s)	1367, 1992
PagI	TCATGA	1 cut(s)	114
PaqCI	CACCTGC	1 cut(s)	328
PceI	AGGCCT	1 cut(s)	522
PciSI	GCTCTTC	2 cut(s)	86, 1205
PcsI	WCGNNNNNNNCGW	3 cut(s)	396, 1846, 1855
PctI	GAATGC	1 cut(s)	1441
PdiI	GCCGGC	1 cut(s)	598
PdmI	GAANNNNTTC	5 cut(s)	905, 1150, 2009, 3009, 3148
PfeI	GAWTC	5 cut(s)	577, 1794, 3005, 3096, 3539
PflFI	GACNNNGTC	1 cut(s)	425
PflMI	CCANNNNNTGG	2 cut(s)	1804, 3191
PfoI	TCCNGGA	1 cut(s)	580
PinAI	ACCGGT	1 cut(s)	326
PleI	GAGTC	3 cut(s)	648, 1831, 2495
PluTI	GGCGCC	1 cut(s)	138
PpsI	GAGTC	3 cut(s)	648, 1831, 2495
Ppu21I	YACGTR	2 cut(s)	3362, 3748
PpuMI	RGGWCCY	1 cut(s)	3490
Psp124BI	GAGCTC	2 cut(s)	1999, 2691
Psp5II	RGGWCCY	1 cut(s)	3490
Psp6I	CCWGG	4 cut(s)	522, 1254, 1335, 1593
PspFI	CCCAGC	2 cut(s)	2609, 2704
PspGI	CCWGG	4 cut(s)	522, 1254, 1335, 1593
PspN4I	GGNNCC	8 cut(s)	136, 151, 973, 1341, 1829, 1916, 2800, 3492
PspPI	GGNCC	7 cut(s)	457, 730, 972, 2046, 2096, 3490, 3583
PspPPI	RGGWCCY	1 cut(s)	3490
PspXI	VCTCGAGB	1 cut(s)	1992
PstI	CTGCAG	1 cut(s)	2252
PstNI	CAGNNNCTG	2 cut(s)	64, 2885
PsuI	RGATCY	2 cut(s)	1563, 2664
PsyI	GACNNNGTC	1 cut(s)	425
PvuII	CAGCTG	3 cut(s)	995, 2402, 3733
RruI	TCGCGA	1 cut(s)	3058
RseI	CAYNNNNRTG	2 cut(s)	3593, 3644
SacI	GAGCTC	2 cut(s)	1999, 2691
SapI	GCTCTTC	2 cut(s)	86, 1205
SaqAI	TTAA	5 cut(s)	192, 1020, 1889, 1910, 2844
Sau96I	GGNCC	7 cut(s)	457, 730, 972, 2046, 2096, 3490, 3583
SchI	GAGTC	3 cut(s)	649, 1831, 2496
SfaNI	GCATC	9 cut(s)	99, 454, 739, 1588, 2262, 2283, 2371, 3306, 3523
SfcI	CTRYAG	3 cut(s)	2067, 2143, 2248
SfiI	GGCCNNNNNGGCC	1 cut(s)	791
SfoI	GGCGCC	1 cut(s)	136
Sfr274I	CTCGAG	2 cut(s)	1367, 1992
SfuI	TTCGAA	1 cut(s)	962
SgrAI	CRCCGGYG	1 cut(s)	326
SinI	GGWCC	3 cut(s)	457, 2096, 3490
SlaI	CTCGAG	2 cut(s)	1367, 1992
SmiMI	CAYNNNNRTG	2 cut(s)	3593, 3644
SmlI	CTYRAG	7 cut(s)	1367, 1909, 1992, 2308, 3485, 3566, 3718
SmoI	CTYRAG	7 cut(s)	1367, 1909, 1992, 2308, 3485, 3566, 3718
SpeI	ACTAGT	1 cut(s)	3691
SphI	GCATGC	1 cut(s)	315
SseBI	AGGCCT	1 cut(s)	522
SspDI	GGCGCC	1 cut(s)	134
SspMI	CTAG	7 cut(s)	809, 2277, 2528, 3495, 3509, 3599, 3692
SstI	GAGCTC	2 cut(s)	1999, 2691
StuI	AGGCCT	1 cut(s)	522
StyI	CCWWGG	4 cut(s)	808, 967, 1050, 2580
TaiI	ACGT	8 cut(s)	390, 635, 1413, 1861, 2199, 3364, 3375, 3750
TaqII	GACCGA	2 cut(s)	263, 2084
TatI	WGTACW	2 cut(s)	258, 321
TauI	GCSGC	9 cut(s)	17, 163, 603, 1424, 2066, 2645, 2721, 3588, 3702
TfiI	GAWTC	5 cut(s)	577, 1794, 3005, 3096, 3539
Tru1I	TTAA	5 cut(s)	192, 1020, 1889, 1910, 2844
Tru9I	TTAA	5 cut(s)	192, 1020, 1889, 1910, 2844
TscAI	CASTG	5 cut(s)	916, 1204, 1222, 2223, 2706
TspGWI	ACGGA	6 cut(s)	419, 458, 2393, 2681, 3089, 3723
TspRI	CASTG	5 cut(s)	916, 1204, 1222, 2223, 2706
Tth111I	GACNNNGTC	1 cut(s)	425
Van91I	CCANNNNNTGG	2 cut(s)	1804, 3191
Vha464I	CTTAAG	1 cut(s)	1909
VneI	GTGCAC	3 cut(s)	143, 814, 3525
VpaK11BI	GGWCC	3 cut(s)	457, 2096, 3490
XapI	RAATTY	4 cut(s)	217, 1091, 1147, 2875
XceI	RCATGY	2 cut(s)	315, 3038
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1805
XhoI	CTCGAG	2 cut(s)	1367, 1992
XmaJI	CCTAGG	1 cut(s)	808
XmnI	GAANNNNTTC	5 cut(s)	905, 1150, 2009, 3009, 3148
XspI	CTAG	7 cut(s)	809, 2277, 2528, 3495, 3509, 3599, 3692
ZraI	GACGTC	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.