Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0009778

Physical Location & Seq

Genomic Coordinates Reverse (-)

2450339 .. 2457516

Gene Structure 7178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g04040.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3762 bp

ATGGCGGAGCCAGCGGCGGAGGCGAAGACAGTGCCTGAGGCGGAGAAGAAGAAGGAGCAGAGCCTGCCCTTTTTCCAGCTCTTCTCCTTTGCAGACAAGTACGATTGGCTCCTCATGATCTTCGGAAGCTTGGGCGCCGTCGTGCACGGGTCCTCCATGCCGGTGTTCTTCCTCATGTTCGGGGAAATGGTTAACGGATTCGGCGAAAACCAAATGAATTTGCAGAAAATGACCGCAGAAGTAGCAAAGTATGCTCTGTACTTTGTGTATCTCGGTCTCATAGTATGCGTAACATCCTACGCAGAGATTGCATGCTGGATGTACACCGGTGAGAGGCAGGTGAGCACGCTGAGGAAGAAGTATCTGGAGGCCGTGCTGAAACAGGACGTCGGCTTCTTCGACACCGACGCTAGAACTGGAGACATTGTCTTTAGTATCTCAACGGACACTCTTCTGGTCCAAGATGCCATCAGTGAGAAGGTGGGGAACTTCATACACTATCTCTCAACGTTTCTGGCGGGGCTGGTGGTAGGGTTTGTATCAGCATGGAGGCTGGCGCTGCTGAGTATTGCGGTGATTCCCGGAATCGCTTTTGCCGGCGGCTTATATGCCTATACACTCACCGGCCTCACGTCCAAGAGTCGCCAGTCGTATGCCAATGCAGGGATAATGGCTGATCAGGCCATCGCGCAAGTTCGGACAGTTTATTCGTACGTTGGTGAAAGCAAGGCCCTCAATTCGTATTCGGATGCAATACAGAACACGTTGCAGCTTGGTTACAAGGCCGGAATGGCCAAGGGTCTCGGCCTAGGGTGTACCTACGGCATTGCTTGTATGTCATGGGCACTTGTTTTCTGGTACGCTGGTGTGTTTATCCGGAATGGGCAGACTGATGGAGGGAAGGCGTTCACCGCCATTTTCTCCGCCATTGTTGGTGGCATGAGCTTGGGTCAGTCATTTTCGAACCTCGGGGCCTTTAGCAAAGGTAAATCAGCCGGATACAAGTTGATGGAGATAATTAAGCAAAAGCCAACCATAGTTCAAGACCCCTTGGAGGGAAAGTGCTTATCGGATGTTAGTGGCAATATAGAATTCAAGGAAGTAACCTTCAGCTACCCTTCGAGGCCAGATGTTATTATCTTCCGAAATTTTTCGATCTTCTTTCCAGCCGGAAAAACTGTTGCTGTTGTTGGTGGCAGTGGTTCAGGGAAGAGCACTGTTGTCTCTCTGATCGAAAGGTTCTACGATCCTAACCAGGGGCAGGTTTTGATCGATAGCGTAAAGGACATAAAAACGCTGCAATTGAAATGGTTGCGCGATCTTCAGAAGATCGGGCTGGTAAACCAGGAACCGGCACTCTTTGCAACTACGATACTCGAGAACATTCTCTATGGAAAGCCTGCCGCAACAATGGAAGATGTTGAAGTTGCAGCTTCCTCAGCGAATGCTCACAGTTTCATCACCTTGCTTCCAAACGGATATAACACTCAGGTAGGAGAGCGAGGAGTTCAGTTATCTGGTGGTCAAAAGCAGAGGATTGCAATTGCCAGAGCTATGTTGAAAAACCCGAAGATCCTACTACTTGACGAAGCAACCAGCGCCCTTGATGCAAGCTCGGAGAGCATTGTTCAAGAAGCTCTAGACCGTCTCATGGTCGGAAGGACAACTGTTGTTGTTGCACATCGCCTTTCCACCATTAGAAATGTTGATAGCATTGCAGTTATACAACAAGGCCAAGTTGTCGAGACAGGAACACATGAAGAACTGATTGCCAAAGCAGGGGCCTACGCTTCTTTAATTCGATTCCAAGAAATGGTCGGGAACAGAGACTTCAGGAACCCATCTACTCGCTGCTCGCGCTCATCACGTCTAAGCCACTCATTGTCGACGAAGTCTTTAAGCCTTAGGTCTGGCAGCTTAAGGAACCTGAGCTATTCGTACAGTACTGGTGCTGATGGGCGGATAGAGATGATTTCAAATGCTGAAACCGACAGGAAAACTCGAGCTCCTAAGAACTATTTCTTCCGGCTTCTGAAGCTAAACGCTCCCGAATGGCCCTATTCAATCATGGCCGCTATAGGATCAGTACTCTCAGGGTTTATTGGTCCAACATTTGCTATTCTAATGGGCAACATGATTGAAGTTTTCTACTATAAAAACCCCGCCTCAATGGAAAGGAAAACAAAGGAATACGTTTTCATGTACATTGGAGTCGGGCTATACGCTGTGGTTGCGTATTTGATACAGCATTACTTCTTCAGCATCATGGGAGAGAACCTCACTACTAGAGTGAGAAGGATGATGCTTGCAGCAATCTTGAGGAATGAAGTTGGATGGTTCGATGAGGAGGAGCACAACTCCAACCTTCTAACAACTAAATTGGCAACGGATGCTGCTGATGTGAAATCAGCTATTTCTGAGAGGATATCTGTGATATTGCAGAACATGACTTCACTCCTCACTTCATTCATTGTTGCCTTCATAGTGGAATGGAGAGTCTCCCTCCTCATTTTAGCAACCTTCCCACTTCTTGTGCTTTCCAACTATGCTCAGCAACTTTCTTTGAAGGGCTTTGCTGGAGACACAGCCAAAGCTCATGCAAAGACGAGCATGATTGCAGGGGAGGGAGTGAGCAACATTCGGACAGTCGCTGCCTTCAATGCCCAAAACAAGATCCTATCTCTCTTCTGCCACGAGCTCCGTCTCCCACAGCTGGGAAGCCTCCGCCGCAGCCAAACCGCTGGCGTCCTATTCGGCCTCTCTCAGTTTGCTCTCCATGCATCTGAAGCTCTCATTTTGTGGTATGGTGCCCACCTCGTTAGCAAAGGTGTCTCGACCTTCTCGAAAGTAATTAAGGTTTTCGTTGTCCTCGTTGTAACGGCCAATTCAGTTGCTGAAACCGTTAGCCTTGCCCCGGAGATTATTAGGGGCGGTGAAGCTGTTGGTTCGGTCTTTTCAATCCTCGATCGTCAAACAAGGATTGATCCGGATGATCCTGAGGCTGAGGTGGTTGAATCAGTACGCGGAGAAATTGAACTTAGGCATGTTGATTTTGCGTACCCATCGCGACCTGATGTCATGGTGTTCAAAGATTTTAGTCTCAGAATCCGCACTGGCCAAAGCCAAGCACTTGTTGGAGCTAGTGGTTCAGGAAAGAGTTCCGTGATTGCATTGATCGAGCGGTTTTATGATCCGATAGTTGGGAAAGTAATGATCGATGGCAAAGACATTCGCCGTCTGAACTTGAAGTCACTTAGGCTGAAGATTGGATTGGTGCAACAAGAACCAGCCCTGTTTGCATCAAGCATTTTCGAAAACATTGCCTACGGCAAAGAAGGCGCGACCGAAGCAGAAGTAATTGAAGCTGCACGTACTGCCAACGTGCATGGTTTTGTTAGCGGGTTGCCAGATGGATACAAAACCCCGGTTGGGGAGAGAGGAGTTCAGCTCTCCGGTGGACAGAAACAAAGAATTGCAATCGCACGGGCGGTGCTCAAGGACCCGAGAATACTCTTGCTAGATGAGGCTACAAGTGCACTTGATGCCGAGTCAGAATGTGTGCTGCAAGAAGCACTCGAGAGACTAATGAGGGGCCGCACCACCGTGCTTGTTGCCCACCGTTTGTCTACAATTAGAGGGGTGGACAGCATCGGCGTGGTGCAAGACGGGCGCATTGTTGAGCACGGCAGCCATTCGGAACTAGCGAGCCGCCCCGACGGAGCTTATACAAGGCTGTTGCAGCTGCAAAATCATCACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0008150 GO:0008361 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009639 GO:0009640 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009908 GO:0009914 GO:0009926 GO:0009958 GO:0009966 GO:0009987 GO:0010033 GO:0010218 GO:0010315 GO:0010329 GO:0010540 GO:0010541 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0016043 GO:0022414 GO:0022622 GO:0022857 GO:0023051 GO:0032501 GO:0032502 GO:0032535 GO:0042221 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0044464 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048527 GO:0048528 GO:0048583 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080161 GO:0090066 GO:0090567 GO:0090691 GO:0090696 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1254

Amino Acids

136.86

Weight (kDa)

8.8

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28860
fragaria_vesca	FvH4_6g48960 FvH4_6g48960 FvH4_6g48960 FvH4_6g48960 FvH4_6g48960
malus_domestica	MD09G1049400.v1.1 MD17G1049500.v1.1 MD17G1049600.v1.1
prunus_persica	Prupe.3G269400_v2.0.a1 Prupe.3G269400_v2.0.a1
pyrus_communis	pycom111g04040 pycom17g04450
rosa_chinensis	RchiOBHm_Chr2g0168761
rosa_laevigata	RLG00000021808
rosa_multiflora	Rmu_ssc0000393.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082690
rosa_rugosa	Rorug02G0535300
rosa_samantha	Rh2BG619000 Rh2DG629700
rosa_wichuraiana	Rw2G050250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	328
AatII	GACGTC	1 cut(s)	390
Acc36I	ACCTGC	2 cut(s)	328, 1252
AccB1I	GGYRCC	2 cut(s)	134, 2807
AccB7I	CCANNNNNTGG	1 cut(s)	1813
AccBSI	CCGCTC	1 cut(s)	3181
AccI	GTMKAC	2 cut(s)	1886, 3626
AccII	CGCG	6 cut(s)	689, 1317, 1858, 3024, 3067, 3341
AccIII	TCCGGA	2 cut(s)	876, 2986
AclI	AACGTT	1 cut(s)	509
AclWI	GGATC	7 cut(s)	1241, 1567, 2089, 2668, 2978, 2987, 3185
AcoI	YGGCCR	4 cut(s)	792, 2070, 2880, 3115
AcsI	RAATTY	3 cut(s)	217, 1091, 1147
AcuI	CTGAAG	7 cut(s)	1093, 1307, 1816, 2054, 2242, 2805, 3281
AcyI	GRCGYC	3 cut(s)	135, 387, 2745
AflII	CTTAAG	1 cut(s)	1918
AflIII	ACRYGT	1 cut(s)	762
AgeI	ACCGGT	1 cut(s)	326
AhdI	GACNNNNNGTC	1 cut(s)	3074
AjiI	CACGTC	2 cut(s)	633, 1868
AjnI	CCWGG	2 cut(s)	1254, 1344
AjuI	GAANNNNNNNTTGG	2 cut(s)	3254, 3286
AleI	CACNNNNGTG	1 cut(s)	3602
Alw21I	GWGCWC	9 cut(s)	147, 347, 1217, 2008, 2355, 2700, 3495, 3538, 3684
Alw44I	GTGCAC	2 cut(s)	143, 3534
AlwI	GGATC	7 cut(s)	1241, 1567, 2089, 2668, 2978, 2987, 3185
AlwNI	CAGNNNCTG	4 cut(s)	35, 64, 2651, 2894
Ama87I	CYCGRG	5 cut(s)	968, 1376, 2001, 3502, 3575
Aor13HI	TCCGGA	2 cut(s)	876, 2986
ApaLI	GTGCAC	2 cut(s)	143, 3534
ApoI	RAATTY	3 cut(s)	217, 1091, 1147
ArsI	GACNNNNNNTTYG	2 cut(s)	691, 723
AsiGI	ACCGGT	1 cut(s)	326
Asp700I	GAANNNNTTC	4 cut(s)	905, 1150, 2018, 3157
AspA2I	CCTAGG	1 cut(s)	808
AspLEI	GCGC	8 cut(s)	137, 559, 691, 1317, 1601, 1860, 3341, 3672
AspS9I	GGNCC	9 cut(s)	150, 457, 730, 972, 1782, 2055, 2105, 3499, 3592
AsuC2I	CCSGG	3 cut(s)	582, 2915, 3425
AsuHPI	GGTGA	8 cut(s)	341, 352, 586, 613, 731, 901, 1453, 2945
AsuII	TTCGAA	2 cut(s)	962, 3312
AvaI	CYCGRG	5 cut(s)	968, 1376, 2001, 3502, 3575
AvaII	GGWCC	4 cut(s)	150, 457, 2105, 3499
AvrII	CCTAGG	1 cut(s)	808
AxyI	CCTNAGG	3 cut(s)	36, 1904, 2997
BaeGI	GKGCMC	4 cut(s)	147, 847, 2812, 3538
BaeI	ACNNNNGTAYC	2 cut(s)	850, 883
BalI	TGGCCA	2 cut(s)	794, 3117
BanI	GGYRCC	2 cut(s)	134, 2807
BanII	GRGCYC	2 cut(s)	2008, 2700
BauI	CACGAG	1 cut(s)	2693
BbsI	GAAGAC	1 cut(s)	32
Bbv12I	GWGCWC	9 cut(s)	147, 347, 1217, 2008, 2355, 2700, 3495, 3538, 3684
BbvCI	CCTCAGC	3 cut(s)	350, 1438, 3003
BceAI	ACGGC	7 cut(s)	122, 356, 838, 2895, 3219, 3343, 3700
BcgI	CGANNNNNNTGC	4 cut(s)	13, 47, 3302, 3336
BciT130I	CCWGG	2 cut(s)	1256, 1346
BciVI	GTATCC	2 cut(s)	992, 3407
BclI	TGATCA	1 cut(s)	676
BcnI	CCSGG	3 cut(s)	582, 2915, 3425
BfaI	CTAG	7 cut(s)	411, 809, 1640, 2286, 3141, 3518, 3701
BfmI	CTRYAG	1 cut(s)	2076
BfoI	RGCGCY	3 cut(s)	138, 560, 1602
BfrI	CTTAAG	1 cut(s)	1918
BfuAI	ACCTGC	2 cut(s)	328, 1252
BfuI	GTATCC	2 cut(s)	992, 3407
BglI	GCCNNNNNGGC	1 cut(s)	791
BlnI	CCTAGG	1 cut(s)	808
BlpI	GCTNAGC	1 cut(s)	2550
BmcAI	AGTACT	2 cut(s)	1945, 2088
Bme1390I	CCNGG	5 cut(s)	582, 1256, 1346, 2915, 3425
Bme18I	GGWCC	4 cut(s)	150, 457, 2105, 3499
BmeRI	GACNNNNNGTC	1 cut(s)	3074
BmeT110I	CYCGRG	5 cut(s)	968, 1376, 2001, 3502, 3575
BmgBI	CACGTC	2 cut(s)	633, 1868
BmgT120I	GGNCC	9 cut(s)	150, 457, 730, 972, 1782, 2055, 2105, 3499, 3592
BmrFI	CCNGG	5 cut(s)	582, 1256, 1346, 2915, 3425
BpiI	GAAGAC	1 cut(s)	32
BplI	GAGNNNNNCTC	8 cut(s)	2262, 2294, 2342, 2374, 2487, 2519, 3432, 3464
BpmI	CTGGAG	3 cut(s)	386, 438, 2598
Bpu10I	CCTNAGC	4 cut(s)	350, 1438, 1928, 3003
Bpu1102I	GCTNAGC	1 cut(s)	2550
Bpu14I	TTCGAA	2 cut(s)	962, 3312
BpuEI	CTTGAG	2 cut(s)	2338, 3479
BpuMI	CCSGG	3 cut(s)	582, 2915, 3425
Bsa29I	ATCGAT	2 cut(s)	1272, 3216
BsaAI	YACGTR	1 cut(s)	3371
BsaHI	GRCGYC	3 cut(s)	135, 387, 2745
BsaI	GGTCTC	2 cut(s)	281, 806
BsaJI	CCNNGG	7 cut(s)	795, 808, 967, 1050, 1255, 2913, 3423
BsaWI	WCCGGW	4 cut(s)	326, 876, 2986, 3452
BsaXI	ACNNNNNCTCC	8 cut(s)	137, 167, 411, 441, 1046, 1076, 1990, 2020
Bse118I	RCCGGY	5 cut(s)	160, 326, 596, 623, 1351
Bse1I	ACTGG	4 cut(s)	421, 646, 1951, 3118
Bse21I	CCTNAGG	3 cut(s)	36, 1904, 2997
Bse3DI	GCAATG	3 cut(s)	825, 1713, 3318
BseAI	TCCGGA	2 cut(s)	876, 2986
BseBI	CCWGG	2 cut(s)	1256, 1346
BseCI	ATCGAT	2 cut(s)	1272, 3216
BseDI	CCNNGG	7 cut(s)	795, 808, 967, 1050, 1255, 2913, 3423
BseGI	GGATG	8 cut(s)	293, 324, 754, 1078, 2304, 2339, 2395, 2995
BseMI	GCAATG	3 cut(s)	825, 1713, 3318
BseNI	ACTGG	4 cut(s)	421, 646, 1951, 3118
BseRI	GAGGAG	7 cut(s)	101, 1518, 2360, 2363, 2447, 2495, 3453
BseSI	GKGCMC	4 cut(s)	147, 847, 2812, 3538
BseYI	CCCAGC	1 cut(s)	2713
BsgI	GTGCAG	1 cut(s)	3351
Bsh1236I	CGCG	6 cut(s)	689, 1317, 1858, 3024, 3067, 3341
Bsh1285I	CGRYCG	2 cut(s)	2968, 3345
BshNI	GGYRCC	2 cut(s)	134, 2807
BshTI	ACCGGT	1 cut(s)	326
BshVI	ATCGAT	2 cut(s)	1272, 3216
BsiEI	CGRYCG	2 cut(s)	2968, 3345
BsiHKAI	GWGCWC	9 cut(s)	147, 347, 1217, 2008, 2355, 2700, 3495, 3538, 3684
BsiHKCI	CYCGRG	5 cut(s)	968, 1376, 2001, 3502, 3575
BsiWI	CGTACG	1 cut(s)	711
BsmBI	CGTCTC	2 cut(s)	1652, 2708
BsmI	GAATGC	1 cut(s)	1450
Bso31I	GGTCTC	2 cut(s)	281, 806
BsoBI	CYCGRG	5 cut(s)	968, 1376, 2001, 3502, 3575
Bsp119I	TTCGAA	2 cut(s)	962, 3312
Bsp13I	TCCGGA	2 cut(s)	876, 2986
Bsp1407I	TGTACA	2 cut(s)	321, 2202
Bsp1720I	GCTNAGC	1 cut(s)	2550
Bsp68I	TCGCGA	1 cut(s)	3067
BspDI	ATCGAT	2 cut(s)	1272, 3216
BspEI	TCCGGA	2 cut(s)	876, 2986
BspFNI	CGCG	6 cut(s)	689, 1317, 1858, 3024, 3067, 3341
BspHI	TCATGA	1 cut(s)	114
BspMI	ACCTGC	2 cut(s)	328, 1252
BspPI	GGATC	7 cut(s)	1241, 1567, 2089, 2668, 2978, 2987, 3185
BspQI	GCTCTTC	2 cut(s)	86, 1205
BspT104I	TTCGAA	2 cut(s)	962, 3312
BspT107I	GGYRCC	2 cut(s)	134, 2807
BspTI	CTTAAG	1 cut(s)	1918
BspTNI	GGTCTC	2 cut(s)	281, 806
BsrBI	CCGCTC	1 cut(s)	3181
BsrDI	GCAATG	3 cut(s)	825, 1713, 3318
BsrFI	RCCGGY	5 cut(s)	160, 326, 596, 623, 1351
BsrGI	TGTACA	2 cut(s)	321, 2202
BsrI	ACTGG	4 cut(s)	421, 646, 1951, 3118
BssAI	RCCGGY	5 cut(s)	160, 326, 596, 623, 1351
BssECI	CCNNGG	7 cut(s)	795, 808, 967, 1050, 1255, 2913, 3423
BssNI	GRCGYC	3 cut(s)	135, 387, 2745
BssSI	CACGAG	1 cut(s)	2693
BssT1I	CCWWGG	3 cut(s)	795, 808, 1050
Bst2BI	CACGAG	1 cut(s)	2693
Bst2UI	CCWGG	2 cut(s)	1256, 1346
Bst6I	CTCTTC	4 cut(s)	86, 456, 1205, 2690
BstACI	GRCGYC	3 cut(s)	135, 387, 2745
BstAFI	CTTAAG	1 cut(s)	1918
BstAPI	GCANNNNNTGC	7 cut(s)	64, 251, 308, 1361, 2390, 3374, 3542
BstAUI	TGTACA	2 cut(s)	321, 2202
BstBAI	YACGTR	1 cut(s)	3371
BstBI	TTCGAA	2 cut(s)	962, 3312
BstF5I	GGATG	8 cut(s)	293, 324, 754, 1078, 2304, 2339, 2395, 2995
BstFNI	CGCG	6 cut(s)	689, 1317, 1858, 3024, 3067, 3341
BstH2I	RGCGCY	3 cut(s)	138, 560, 1602
BstHHI	GCGC	8 cut(s)	137, 559, 691, 1317, 1601, 1860, 3341, 3672
BstMCI	CGRYCG	2 cut(s)	2968, 3345
BstNI	CCWGG	2 cut(s)	1256, 1346
BstNSI	RCATGY	2 cut(s)	315, 3047
BstSCI	CCNGG	5 cut(s)	580, 1254, 1344, 2913, 3423
BstSFI	CTRYAG	1 cut(s)	2076
BstSLI	GKGCMC	4 cut(s)	147, 847, 2812, 3538
BstUI	CGCG	6 cut(s)	689, 1317, 1858, 3024, 3067, 3341
BstV2I	GAAGAC	1 cut(s)	32
BstX2I	RGATCY	2 cut(s)	1572, 2673
BstXI	CCANNNNNNTGG	1 cut(s)	2741
BstYI	RGATCY	2 cut(s)	1572, 2673
Bsu15I	ATCGAT	2 cut(s)	1272, 3216
Bsu36I	CCTNAGG	3 cut(s)	36, 1904, 2997
BsuI	GTATCC	2 cut(s)	992, 3407
BsuTUI	ATCGAT	2 cut(s)	1272, 3216
BtgZI	GCGATG	3 cut(s)	670, 1667, 3048
BtrI	CACGTC	2 cut(s)	633, 1868
BtsCI	GGATG	8 cut(s)	293, 324, 754, 1078, 2304, 2339, 2395, 2995
BtsI	GCAGTG	1 cut(s)	1204
BtsIMutI	CAGTG	5 cut(s)	36, 478, 1204, 1215, 3111
BtuMI	TCGCGA	1 cut(s)	3067
BveI	ACCTGC	2 cut(s)	328, 1252
CaiI	CAGNNNCTG	4 cut(s)	35, 64, 2651, 2894
CciI	TCATGA	1 cut(s)	114
CfoI	GCGC	8 cut(s)	137, 559, 691, 1317, 1601, 1860, 3341, 3672
Cfr10I	RCCGGY	5 cut(s)	160, 326, 596, 623, 1351
Cfr13I	GGNCC	9 cut(s)	150, 457, 730, 972, 1782, 2055, 2105, 3499, 3592
ClaI	ATCGAT	2 cut(s)	1272, 3216
CseI	GACGC	2 cut(s)	416, 2734
CspAI	ACCGGT	1 cut(s)	326
CspCI	CAANNNNNGTGG	2 cut(s)	3589, 3624
DinI	GGCGCC	1 cut(s)	136
DriI	GACNNNNNGTC	1 cut(s)	3074
EaeI	YGGCCR	4 cut(s)	792, 2070, 2880, 3115
Eam1104I	CTCTTC	4 cut(s)	86, 456, 1205, 2690
Eam1105I	GACNNNNNGTC	1 cut(s)	3074
EarI	CTCTTC	4 cut(s)	86, 456, 1205, 2690
EciI	GGCGGA	6 cut(s)	20, 32, 56, 913, 1975, 2714
Ecl136II	GAGCTC	2 cut(s)	2006, 2698
Eco130I	CCWWGG	3 cut(s)	795, 808, 1050
Eco24I	GRGCYC	2 cut(s)	2008, 2700
Eco31I	GGTCTC	2 cut(s)	281, 806
Eco32I	GATATC	1 cut(s)	2427
Eco47I	GGWCC	4 cut(s)	150, 457, 2105, 3499
Eco53kI	GAGCTC	2 cut(s)	2006, 2698
Eco57I	CTGAAG	7 cut(s)	1093, 1307, 1816, 2054, 2242, 2805, 3281
Eco81I	CCTNAGG	3 cut(s)	36, 1904, 2997
Eco88I	CYCGRG	5 cut(s)	968, 1376, 2001, 3502, 3575
EcoICRI	GAGCTC	2 cut(s)	2006, 2698
EcoO109I	RGGNCCY	5 cut(s)	150, 730, 972, 1782, 3499
EcoRI	GAATTC	1 cut(s)	1091
EcoRII	CCWGG	2 cut(s)	1254, 1344
EcoRV	GATATC	1 cut(s)	2427
EcoT14I	CCWWGG	3 cut(s)	795, 808, 1050
EcoT22I	ATGCAT	1 cut(s)	2782
EcoT38I	GRGCYC	2 cut(s)	2008, 2700
EgeI	GGCGCC	1 cut(s)	136
EheI	GGCGCC	1 cut(s)	136
ErhI	CCWWGG	3 cut(s)	795, 808, 1050
Esp3I	CGTCTC	2 cut(s)	1652, 2708
FauI	CCCGC	3 cut(s)	511, 2170, 3392
FauNDI	CATATG	1 cut(s)	3758
FbaI	TGATCA	1 cut(s)	676
FblI	GTMKAC	2 cut(s)	1886, 3626
FokI	GGATG	8 cut(s)	280, 331, 761, 1085, 2311, 2346, 2402, 3002
FriOI	GRGCYC	2 cut(s)	2008, 2700
FspBI	CTAG	7 cut(s)	411, 809, 1640, 2286, 3141, 3518, 3701
GlaI	GCGC	8 cut(s)	136, 558, 690, 1316, 1600, 1859, 3340, 3671
GsaI	CCCAGC	1 cut(s)	2717
GsuI	CTGGAG	3 cut(s)	386, 438, 2598
HaeII	RGCGCY	3 cut(s)	138, 560, 1602
HgaI	GACGC	2 cut(s)	416, 2734
HhaI	GCGC	8 cut(s)	137, 559, 691, 1317, 1601, 1860, 3341, 3672
Hin1I	GRCGYC	3 cut(s)	135, 387, 2745
Hin6I	GCGC	8 cut(s)	135, 557, 689, 1315, 1599, 1858, 3339, 3670
HinP1I	GCGC	8 cut(s)	135, 557, 689, 1315, 1599, 1858, 3339, 3670
HincII	GTYRAC	2 cut(s)	193, 1887
HindII	GTYRAC	2 cut(s)	193, 1887
HindIII	AAGCTT	1 cut(s)	127
HpaI	GTTAAC	1 cut(s)	193
HphI	GGTGA	8 cut(s)	341, 352, 586, 613, 731, 901, 1453, 2945
Hpy99I	CGWCG	5 cut(s)	143, 392, 410, 1891, 3719
HpyCH4IV	ACGT	9 cut(s)	387, 509, 632, 714, 764, 1867, 2193, 3370, 3381
HpySE526I	ACGT	9 cut(s)	387, 509, 632, 714, 764, 1867, 2193, 3370, 3381
Hsp92I	GRCGYC	3 cut(s)	135, 387, 2745
HspAI	GCGC	8 cut(s)	135, 557, 689, 1315, 1599, 1858, 3339, 3670
KasI	GGCGCC	1 cut(s)	134
Kpn2I	TCCGGA	2 cut(s)	876, 2986
KroI	GCCGGC	1 cut(s)	596
KroNI	GCCGGC	1 cut(s)	598
Ksp22I	TGATCA	1 cut(s)	676
KspAI	GTTAAC	1 cut(s)	193
LguI	GCTCTTC	2 cut(s)	86, 1205
LmnI	GCTCC	9 cut(s)	7, 55, 114, 2011, 2050, 2350, 2703, 3137, 3719
MaeI	CTAG	7 cut(s)	411, 809, 1640, 2286, 3141, 3518, 3701
MaeII	ACGT	9 cut(s)	387, 509, 632, 714, 764, 1867, 2193, 3370, 3381
MaeIII	GTNAC	5 cut(s)	289, 776, 1102, 2875, 3249
MbiI	CCGCTC	1 cut(s)	3181
MfeI	CAATTG	2 cut(s)	1301, 1542
MflI	RGATCY	2 cut(s)	1572, 2673
MlsI	TGGCCA	2 cut(s)	794, 3117
MluNI	TGGCCA	2 cut(s)	794, 3117
Mly113I	GGCGCC	1 cut(s)	135
MlyI	GAGTC	4 cut(s)	649, 2220, 2505, 3557
MmeI	TCCRAC	6 cut(s)	1636, 2132, 2311, 2385, 2565, 3115
Mox20I	TGGCCA	2 cut(s)	794, 3117
Mph1103I	ATGCAT	1 cut(s)	2782
MroI	TCCGGA	2 cut(s)	876, 2986
MroNI	GCCGGC	1 cut(s)	596
MroXI	GAANNNNTTC	4 cut(s)	905, 1150, 2018, 3157
MscI	TGGCCA	2 cut(s)	794, 3117
MseI	TTAA	6 cut(s)	192, 1020, 1796, 1898, 1919, 2853
MslI	CAYNNNNRTG	3 cut(s)	161, 3602, 3653
Msp20I	TGGCCA	2 cut(s)	794, 3117
MspA1I	CMGCKG	4 cut(s)	14, 2713, 2741, 3742
MspCI	CTTAAG	1 cut(s)	1918
MspR9I	CCNGG	5 cut(s)	582, 1256, 1346, 2915, 3425
MunI	CAATTG	2 cut(s)	1301, 1542
Mva1269I	GAATGC	1 cut(s)	1450
MvaI	CCWGG	2 cut(s)	1256, 1346
MvnI	CGCG	6 cut(s)	689, 1317, 1858, 3024, 3067, 3341
NaeI	GCCGGC	1 cut(s)	598
NarI	GGCGCC	1 cut(s)	135
NciI	CCSGG	3 cut(s)	582, 2915, 3425
NdeI	CATATG	1 cut(s)	3758
NgoMIV	GCCGGC	1 cut(s)	596
NmeAIII	GCCGAG	2 cut(s)	783, 3571
NmuCI	GTSAC	1 cut(s)	3249
NruI	TCGCGA	1 cut(s)	3067
NsiI	ATGCAT	1 cut(s)	2782
NspI	RCATGY	2 cut(s)	315, 3047
NspV	TTCGAA	2 cut(s)	962, 3312
OliI	CACNNNNGTG	1 cut(s)	3602
PaeI	GCATGC	1 cut(s)	315
PaeR7I	CTCGAG	3 cut(s)	1376, 2001, 3575
PagI	TCATGA	1 cut(s)	114
PaqCI	CACCTGC	1 cut(s)	328
PciSI	GCTCTTC	2 cut(s)	86, 1205
PcsI	WCGNNNNNNNCGW	5 cut(s)	201, 396, 2840, 2868, 3701
PctI	GAATGC	1 cut(s)	1450
PdiI	GCCGGC	1 cut(s)	598
PdmI	GAANNNNTTC	4 cut(s)	905, 1150, 2018, 3157
PfeI	GAWTC	6 cut(s)	198, 577, 585, 1803, 3014, 3105
Pfl23II	CGTACG	1 cut(s)	711
PflFI	GACNNNGTC	2 cut(s)	425, 1891
PflMI	CCANNNNNTGG	1 cut(s)	1813
PfoI	TCCNGGA	1 cut(s)	580
PinAI	ACCGGT	1 cut(s)	326
Ple19I	CGATCG	1 cut(s)	2968
PleI	GAGTC	4 cut(s)	648, 2219, 2504, 3556
PluTI	GGCGCC	1 cut(s)	138
PpsI	GAGTC	4 cut(s)	648, 2219, 2504, 3556
Ppu21I	YACGTR	1 cut(s)	3371
PpuMI	RGGWCCY	2 cut(s)	150, 3499
Psp124BI	GAGCTC	2 cut(s)	2008, 2700
Psp1406I	AACGTT	1 cut(s)	509
Psp5II	RGGWCCY	2 cut(s)	150, 3499
Psp6I	CCWGG	2 cut(s)	1254, 1344
PspFI	CCCAGC	1 cut(s)	2713
PspGI	CCWGG	2 cut(s)	1254, 1344
PspLI	CGTACG	1 cut(s)	711
PspPI	GGNCC	9 cut(s)	150, 457, 730, 972, 1782, 2055, 2105, 3499, 3592
PspPPI	RGGWCCY	2 cut(s)	150, 3499
PspXI	VCTCGAGB	1 cut(s)	2001
PstNI	CAGNNNCTG	4 cut(s)	35, 64, 2651, 2894
PsuI	RGATCY	2 cut(s)	1572, 2673
PsyI	GACNNNGTC	2 cut(s)	425, 1891
PvuI	CGATCG	1 cut(s)	2968
PvuII	CAGCTG	2 cut(s)	2713, 3742
RruI	TCGCGA	1 cut(s)	3067
RseI	CAYNNNNRTG	3 cut(s)	161, 3602, 3653
SacI	GAGCTC	2 cut(s)	2008, 2700
SalI	GTCGAC	1 cut(s)	1885
SapI	GCTCTTC	2 cut(s)	86, 1205
SaqAI	TTAA	6 cut(s)	192, 1020, 1796, 1898, 1919, 2853
Sau96I	GGNCC	9 cut(s)	150, 457, 730, 972, 1782, 2055, 2105, 3499, 3592
ScaI	AGTACT	2 cut(s)	1945, 2088
SchI	GAGTC	4 cut(s)	649, 2220, 2505, 3557
ScrFI	CCNGG	5 cut(s)	582, 1256, 1346, 2915, 3425
SfcI	CTRYAG	1 cut(s)	2076
SfiI	GGCCNNNNNGGCC	1 cut(s)	791
SfoI	GGCGCC	1 cut(s)	136
Sfr274I	CTCGAG	3 cut(s)	1376, 2001, 3575
SfuI	TTCGAA	2 cut(s)	962, 3312
SgrAI	CRCCGGYG	1 cut(s)	326
SinI	GGWCC	4 cut(s)	150, 457, 2105, 3499
SlaI	CTCGAG	3 cut(s)	1376, 2001, 3575
SmiMI	CAYNNNNRTG	3 cut(s)	161, 3602, 3653
SmlI	CTYRAG	6 cut(s)	1376, 1918, 2001, 2317, 3494, 3575
SmoI	CTYRAG	6 cut(s)	1376, 1918, 2001, 2317, 3494, 3575
SphI	GCATGC	1 cut(s)	315
SspDI	GGCGCC	1 cut(s)	134
SspMI	CTAG	7 cut(s)	411, 809, 1640, 2286, 3141, 3518, 3701
SstI	GAGCTC	2 cut(s)	2008, 2700
StyD4I	CCNGG	5 cut(s)	580, 1254, 1344, 2913, 3423
StyI	CCWWGG	3 cut(s)	795, 808, 1050
TaiI	ACGT	9 cut(s)	390, 512, 635, 717, 767, 1870, 2196, 3373, 3384
TaqII	GACCGA	3 cut(s)	263, 2938, 3359
TatI	WGTACW	5 cut(s)	258, 321, 1943, 2086, 2202
TauI	GCSGC	7 cut(s)	17, 603, 1406, 2075, 2730, 3597, 3711
TfiI	GAWTC	6 cut(s)	198, 577, 585, 1803, 3014, 3105
Tru1I	TTAA	6 cut(s)	192, 1020, 1796, 1898, 1919, 2853
Tru9I	TTAA	6 cut(s)	192, 1020, 1796, 1898, 1919, 2853
TscAI	CASTG	5 cut(s)	36, 478, 1204, 1222, 3118
TseFI	GTSAC	1 cut(s)	3249
Tsp45I	GTSAC	1 cut(s)	3249
TspDTI	ATGAA	9 cut(s)	230, 481, 1447, 1773, 2188, 2340, 2454, 2458, 2470
TspGWI	ACGGA	7 cut(s)	210, 458, 1491, 2402, 2690, 3151, 3732
TspRI	CASTG	5 cut(s)	36, 478, 1204, 1222, 3118
Tth111I	GACNNNGTC	2 cut(s)	425, 1891
Van91I	CCANNNNNTGG	1 cut(s)	1813
Vha464I	CTTAAG	1 cut(s)	1918
VneI	GTGCAC	2 cut(s)	143, 3534
VpaK11BI	GGWCC	4 cut(s)	150, 457, 2105, 3499
XapI	RAATTY	3 cut(s)	217, 1091, 1147
XbaI	TCTAGA	1 cut(s)	1639
XceI	RCATGY	2 cut(s)	315, 3047
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3131
XhoI	CTCGAG	3 cut(s)	1376, 2001, 3575
XmaJI	CCTAGG	1 cut(s)	808
XmiI	GTMKAC	2 cut(s)	1886, 3626
XmnI	GAANNNNTTC	4 cut(s)	905, 1150, 2018, 3157
XspI	CTAG	7 cut(s)	411, 809, 1640, 2286, 3141, 3518, 3701
ZraI	GACGTC	1 cut(s)	388
ZrmI	AGTACT	2 cut(s)	1945, 2088
Zsp2I	ATGCAT	1 cut(s)	2782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.