MD17G1049500.v1.1

ABC transporter B family member

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
3621866 .. 3623122
1257 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1049500.v1.1.491

Sequence Viewer

Length: 1257 bp
ATGCAGTTTACTGACTGTTTAATCCTGCAATTGTGCGTTATGCAGCAGCAACTTTCTTTGAAGGGCTTTGCTGGAGACACAGCCAAGGCTCATGCAAAGACGAGCATGATTGCTGGGGAGGGAGTGAGCAACATTCGGACAGTCGCCGCCTTCAATGCCCAAAACAAGATCCTATCTCTGTTCTGCCACGAGCTCCGTCTCCCACTGCTGGGAAGCCTCCGCCGCAGCCAAACTGCTGGCGTCCTATTTGGCCTCTCTCAGTTTGCTCTCCATGCCTCTGAAGCTCTCATTTTGTGGTATGGTGCCCACCTCGTTAGCAAAGGTGTCTCCACCTTCTCGAAAGTTATTAAGGTTTTCATTGTCCTTGTTGTAACGGCGAATTCAGTTGCTGAAACTGTCAGCCTTGCCCCGGAGATTATCAGGGGCGGTGAAGCAGTTGGTTCGGTATTTTCAATCCTTGATCGTCAAACAAGGATTGACCCGGATGATCCTGAGGCTGAGGTGGTTGAATCAGTTCGCGGAGAAATTGAACTTAGGCATGTTGATTTTGCATATCCATCGCGACCTGATATCATGGTGTTCAAAGATTTTAGTCTCAGAATCCGTACTGGCCACAGCCAAGCGCTTGTCGGAGTTAGTGGTTCGGGAAAGAGTTCTGTGATTGCATTGATCGAGCGATTTTATGATCCATTAGTTGGGAAAGTAATGATCGATGGCAAGGACATCCGCCGGTTGAACTTGAAGTCTCTTCGGTTGAAAATTGGACTGGTGCAACAAGAACCAGCCCTGTTTGCAGCAAGCATCTTTGAAAACATTGCCTACGGCAAAGAAGGCGCAACCGAAGCAGAAGTAATCGAAGCTGCACGTACTGCTAACGTGCATGGTTTCGTTAGCGGATTGCCTGATGGATACAAAACCCCGGTTGGGGAGCGAGGAGTTCAGCTCTCTGGCGGACAGAAACAAAGAATTGCAATAGCAAGGGCGGTGCTCAAGGACCCTAGAATACTCTTGCTAGATGAGGCCACAAGTGCACTTGATGCTGAATCAGAATGTGTGTTGCAAGAAGCACTTGAGAGGCTAATGAAGGGCCGCACCACCGTGCTAGTTGCCCACCGTTTATCGACAATTAGAGGGGTGGACAGCATTGGCGTGGTGCAAGACGGGCGCATTGTGGAACACGGCAGCCATTCGGAACTAGTGAGCCGCCCCGACGGAGCTTACTCAAGGCTGTTGCAGCTGCAAAATCATCACGTATGA

Protein Analysis

419

Amino Acids

45.32

Weight (kDa)

7.76

Isoelectric Point (pI)

36.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 21 - 125 3e-14 ABC transporter transmembrane region
ABC_tran PF00005 195 - 343 1.8e-30 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 302
AccB7I CCANNNNNTGG 1 cut(s) 695
AccII CGCG 2 cut(s) 519, 562
AclWI GGATC 3 cut(s) 163, 482, 680
AcoI YGGCCR 1 cut(s) 610
AcsI RAATTY 1 cut(s) 379
AcuI CTGAAG 1 cut(s) 300
AcyI GRCGYC 1 cut(s) 240
AfaI GTAC 2 cut(s) 607, 868
AfeI AGCGCT 1 cut(s) 624
AfiI CCNNNNNNNGG 6 cut(s) 208, 209, 409, 695, 924, 925
AhlI ACTAGT 1 cut(s) 1195
AleI CACNNNNGTG 1 cut(s) 1097
AluBI AGCT 6 cut(s) 193, 284, 860, 943, 1217, 1237
AluI AGCT 6 cut(s) 193, 284, 860, 943, 1217, 1237
Alw21I GWGCWC 3 cut(s) 195, 990, 1033
Alw26I GTCTC 5 cut(s) 69, 203, 331, 599, 750
Alw44I GTGCAC 1 cut(s) 1029
AlwI GGATC 3 cut(s) 163, 482, 680
AlwNI CAGNNNCTG 1 cut(s) 389
Aor51HI AGCGCT 1 cut(s) 624
AoxI GGCC 4 cut(s) 250, 610, 1020, 1087
ApaLI GTGCAC 1 cut(s) 1029
ApeKI GCWGC 8 cut(s) 43, 46, 225, 794, 860, 1182, 1234, 1237
ApoI RAATTY 1 cut(s) 379
Asp700I GAANNNNTTC 2 cut(s) 513, 652
AspLEI GCGC 3 cut(s) 625, 836, 1167
AspS9I GGNCC 2 cut(s) 994, 1087
AsuC2I CCSGG 3 cut(s) 410, 482, 920
AsuHPI GGTGA 1 cut(s) 440
AvaII GGWCC 1 cut(s) 994
AxyI CCTNAGG 1 cut(s) 492
BaeGI GKGCMC 2 cut(s) 307, 1033
BalI TGGCCA 1 cut(s) 612
BanI GGYRCC 1 cut(s) 302
BanII GRGCYC 1 cut(s) 195
BauI CACGAG 1 cut(s) 188
Bbv12I GWGCWC 3 cut(s) 195, 990, 1033
BbvCI CCTCAGC 1 cut(s) 498
BbvI GCAGC 8 cut(s) 55, 58, 237, 806, 847, 1194, 1224, 1246
BccI CCATC 3 cut(s) 565, 707, 899
BceAI ACGGC 3 cut(s) 390, 838, 1195
BcgI CGANNNNNNTGC 4 cut(s) 423, 457, 540, 574
BciVI GTATCC 1 cut(s) 902
BcnI CCSGG 3 cut(s) 410, 482, 920
BcoDI GTCTC 5 cut(s) 69, 203, 331, 599, 750
BcuI ACTAGT 1 cut(s) 1195
BfaI CTAG 4 cut(s) 999, 1013, 1103, 1196
BfoI RGCGCY 1 cut(s) 626
BfuI GTATCC 1 cut(s) 902
Bme1390I CCNGG 3 cut(s) 410, 482, 920
Bme18I GGWCC 1 cut(s) 994
BmgT120I GGNCC 2 cut(s) 994, 1087
BmiI GGNNCC 2 cut(s) 304, 996
BmrFI CCNGG 3 cut(s) 410, 482, 920
BmsI GCATC 2 cut(s) 810, 1027
BplI GAGNNNNNCTC 2 cut(s) 927, 959
BpmI CTGGAG 1 cut(s) 93
Bpu10I CCTNAGC 1 cut(s) 498
BpuEI CTTGAG 3 cut(s) 974, 1091, 1207
BpuMI CCSGG 3 cut(s) 410, 482, 920
Bsa29I ATCGAT 1 cut(s) 711
BsaAI YACGTR 2 cut(s) 866, 1252
BsaHI GRCGYC 1 cut(s) 240
BsaJI CCNNGG 3 cut(s) 84, 408, 918
Bsc4I CCNNNNNNNGG 6 cut(s) 208, 209, 409, 695, 924, 925
Bse118I RCCGGY 1 cut(s) 729
Bse1I ACTGG 2 cut(s) 613, 771
Bse21I CCTNAGG 1 cut(s) 492
Bse3DI GCAATG 1 cut(s) 813
BseCI ATCGAT 1 cut(s) 711
BseDI CCNNGG 3 cut(s) 84, 408, 918
BseGI GGATG 2 cut(s) 490, 723
BseLI CCNNNNNNNGG 6 cut(s) 208, 209, 409, 695, 924, 925
BseMI GCAATG 1 cut(s) 813
BseMII CTCAG 4 cut(s) 272, 483, 489, 610
BseNI ACTGG 2 cut(s) 613, 771
BseRI GAGGAG 1 cut(s) 948
BseSI GKGCMC 2 cut(s) 307, 1033
BseXI GCAGC 8 cut(s) 55, 58, 237, 806, 847, 1194, 1224, 1246
BseYI CCCAGC 2 cut(s) 113, 208
BsgI GTGCAG 1 cut(s) 846
Bsh1236I CGCG 2 cut(s) 519, 562
BshFI GGCC 4 cut(s) 252, 612, 1022, 1089
BshNI GGYRCC 1 cut(s) 302
BshVI ATCGAT 1 cut(s) 711
BsiHKAI GWGCWC 3 cut(s) 195, 990, 1033
BsiSI CCGG 4 cut(s) 410, 482, 730, 920
BslI CCNNNNNNNGG 6 cut(s) 208, 209, 409, 695, 924, 925
BsmAI GTCTC 5 cut(s) 69, 203, 331, 599, 750
BsmBI CGTCTC 1 cut(s) 203
BsnI GGCC 4 cut(s) 252, 612, 1022, 1089
Bsp1286I GDGCHC 4 cut(s) 195, 307, 990, 1033
Bsp143I GATC 6 cut(s) 168, 460, 487, 669, 685, 708
Bsp68I TCGCGA 1 cut(s) 562
BspANI GGCC 4 cut(s) 252, 612, 1022, 1089
BspCNI CTCAG 4 cut(s) 271, 484, 490, 609
BspDI ATCGAT 1 cut(s) 711
BspFNI CGCG 2 cut(s) 519, 562
BspLI GGNNCC 2 cut(s) 304, 996
BspPI GGATC 3 cut(s) 163, 482, 680
BspT107I GGYRCC 1 cut(s) 302
BsrDI GCAATG 1 cut(s) 813
BsrFI RCCGGY 1 cut(s) 729
BsrI ACTGG 2 cut(s) 613, 771
BssAI RCCGGY 1 cut(s) 729
BssECI CCNNGG 3 cut(s) 84, 408, 918
BssMI GATC 6 cut(s) 168, 460, 487, 669, 685, 708
BssNI GRCGYC 1 cut(s) 240
BssSI CACGAG 1 cut(s) 188
BssT1I CCWWGG 1 cut(s) 84
Bst2BI CACGAG 1 cut(s) 188
Bst4CI ACNGT 5 cut(s) 17, 142, 397, 1099, 1115
Bst6I CTCTTC 1 cut(s) 753
BstACI GRCGYC 1 cut(s) 240
BstAPI GCANNNNNTGC 2 cut(s) 869, 1037
BstBAI YACGTR 2 cut(s) 866, 1252
BstC8I GCNNGC 2 cut(s) 238, 799
BstDEI CTNAG 5 cut(s) 258, 492, 498, 533, 596
BstF5I GGATG 2 cut(s) 490, 723
BstFNI CGCG 2 cut(s) 519, 562
BstH2I RGCGCY 1 cut(s) 626
BstHHI GCGC 3 cut(s) 625, 836, 1167
BstKTI GATC 6 cut(s) 171, 463, 490, 672, 688, 711
BstMAI GTCTC 5 cut(s) 69, 203, 331, 599, 750
BstMBI GATC 6 cut(s) 168, 460, 487, 669, 685, 708
BstNSI RCATGY 1 cut(s) 542
BstSCI CCNGG 3 cut(s) 408, 480, 918
BstSLI GKGCMC 2 cut(s) 307, 1033
BstUI CGCG 2 cut(s) 519, 562
BstV1I GCAGC 8 cut(s) 55, 58, 237, 806, 847, 1194, 1224, 1246
BstX2I RGATCY 1 cut(s) 168
BstXI CCANNNNNNTGG 1 cut(s) 236
BstYI RGATCY 1 cut(s) 168
Bsu15I ATCGAT 1 cut(s) 711
Bsu36I CCTNAGG 1 cut(s) 492
BsuI GTATCC 1 cut(s) 902
BsuRI GGCC 4 cut(s) 252, 612, 1022, 1089
BsuTUI ATCGAT 1 cut(s) 711
BtgZI GCGATG 1 cut(s) 543
BtsCI GGATG 2 cut(s) 490, 723
BtsI GCAGTG 1 cut(s) 203
BtsIMutI CAGTG 1 cut(s) 203
BtuMI TCGCGA 1 cut(s) 562
Cac8I GCNNGC 2 cut(s) 238, 799
CaiI CAGNNNCTG 1 cut(s) 389
CfoI GCGC 3 cut(s) 625, 836, 1167
Cfr10I RCCGGY 1 cut(s) 729
Cfr13I GGNCC 2 cut(s) 994, 1087
ClaI ATCGAT 1 cut(s) 711
CseI GACGC 1 cut(s) 229
Csp6I GTAC 2 cut(s) 606, 867
CviAII CATG 6 cut(s) 92, 106, 272, 539, 574, 881
CviQI GTAC 2 cut(s) 606, 867
DdeI CTNAG 5 cut(s) 258, 492, 498, 533, 596
DpnI GATC 6 cut(s) 170, 462, 489, 671, 687, 710
DpnII GATC 6 cut(s) 168, 460, 487, 669, 685, 708
EaeI YGGCCR 1 cut(s) 610
Eam1104I CTCTTC 1 cut(s) 753
EarI CTCTTC 1 cut(s) 753
EciI GGCGGA 3 cut(s) 209, 716, 966
Ecl136II GAGCTC 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 195
Eco32I GATATC 1 cut(s) 571
Eco47I GGWCC 1 cut(s) 994
Eco47III AGCGCT 1 cut(s) 624
Eco53kI GAGCTC 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 300
Eco81I CCTNAGG 1 cut(s) 492
EcoICRI GAGCTC 1 cut(s) 193
EcoO109I RGGNCCY 1 cut(s) 994
EcoRI GAATTC 1 cut(s) 379
EcoRV GATATC 1 cut(s) 571
EcoT14I CCWWGG 1 cut(s) 84
EcoT38I GRGCYC 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 84
Esp3I CGTCTC 1 cut(s) 203
FaeI CATG 6 cut(s) 95, 109, 275, 542, 577, 884
FalI AAGNNNNNCTT 2 cut(s) 1053, 1085
FatI CATG 6 cut(s) 91, 105, 271, 538, 573, 880
FokI GGATG 2 cut(s) 497, 710
FriOI GRGCYC 1 cut(s) 195
FspBI CTAG 4 cut(s) 999, 1013, 1103, 1196
GlaI GCGC 3 cut(s) 624, 835, 1166
GsaI CCCAGC 2 cut(s) 117, 212
GsuI CTGGAG 1 cut(s) 93
HaeII RGCGCY 1 cut(s) 626
HaeIII GGCC 4 cut(s) 252, 612, 1022, 1089
HapII CCGG 4 cut(s) 410, 482, 730, 920
HgaI GACGC 1 cut(s) 229
HhaI GCGC 3 cut(s) 625, 836, 1167
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 6 cut(s) 95, 109, 275, 542, 577, 884
Hin6I GCGC 3 cut(s) 623, 834, 1165
HinP1I GCGC 3 cut(s) 623, 834, 1165
HinfI GANTC 3 cut(s) 509, 600, 1043
HpaII CCGG 4 cut(s) 410, 482, 730, 920
HphI GGTGA 1 cut(s) 440
Hpy166II GTNNAC 3 cut(s) 9, 1031, 1138
Hpy188I TCNGA 6 cut(s) 138, 280, 599, 632, 1048, 1192
Hpy188III TCNNGA 4 cut(s) 337, 491, 561, 645
Hpy8I GTNNAC 3 cut(s) 9, 1031, 1138
Hpy99I CGWCG 1 cut(s) 1214
HpyAV CCTTC 5 cut(s) 55, 160, 343, 824, 1078
HpyCH4III ACNGT 5 cut(s) 17, 142, 397, 1099, 1115
HpyCH4IV ACGT 3 cut(s) 865, 876, 1251
HpyF3I CTNAG 5 cut(s) 258, 492, 498, 533, 596
HpySE526I ACGT 3 cut(s) 865, 876, 1251
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 6 cut(s) 95, 109, 275, 542, 577, 884
HspAI GCGC 3 cut(s) 623, 834, 1165
Kzo9I GATC 6 cut(s) 168, 460, 487, 669, 685, 708
LmnI GCTCC 3 cut(s) 198, 928, 1214
Lsp1109I GCAGC 8 cut(s) 55, 58, 237, 806, 847, 1194, 1224, 1246
LweI GCATC 2 cut(s) 810, 1027
MaeI CTAG 4 cut(s) 999, 1013, 1103, 1196
MaeII ACGT 3 cut(s) 865, 876, 1251
MaeIII GTNAC 1 cut(s) 370
MalI GATC 6 cut(s) 170, 462, 489, 671, 687, 710
MboI GATC 6 cut(s) 168, 460, 487, 669, 685, 708
MboII GAAGA 1 cut(s) 740
MfeI CAATTG 1 cut(s) 29
MflI RGATCY 1 cut(s) 168
MhlI GDGCHC 4 cut(s) 195, 307, 990, 1033
MlsI TGGCCA 1 cut(s) 612
MluCI AATT 6 cut(s) 29, 379, 525, 759, 966, 1125
MluNI TGGCCA 1 cut(s) 612
MmeI TCCRAC 1 cut(s) 610
Mox20I TGGCCA 1 cut(s) 612
MroXI GAANNNNTTC 2 cut(s) 513, 652
MscI TGGCCA 1 cut(s) 612
MseI TTAA 2 cut(s) 20, 348
MslI CAYNNNNRTG 2 cut(s) 1097, 1148
Msp20I TGGCCA 1 cut(s) 612
MspA1I CMGCKG 1 cut(s) 1237
MspI CCGG 4 cut(s) 410, 482, 730, 920
MspR9I CCNGG 3 cut(s) 410, 482, 920
MunI CAATTG 1 cut(s) 29
MvnI CGCG 2 cut(s) 519, 562
NciI CCSGG 3 cut(s) 410, 482, 920
NdeII GATC 6 cut(s) 168, 460, 487, 669, 685, 708
NlaIII CATG 6 cut(s) 95, 109, 275, 542, 577, 884
NlaIV GGNNCC 2 cut(s) 304, 996
NruI TCGCGA 1 cut(s) 562
NspI RCATGY 1 cut(s) 542
OliI CACNNNNGTG 1 cut(s) 1097
PdmI GAANNNNTTC 2 cut(s) 513, 652
PfeI GAWTC 3 cut(s) 509, 600, 1043
PflMI CCANNNNNTGG 1 cut(s) 695
Ppu21I YACGTR 2 cut(s) 866, 1252
PpuMI RGGWCCY 1 cut(s) 994
Psp124BI GAGCTC 1 cut(s) 195
Psp5II RGGWCCY 1 cut(s) 994
PspFI CCCAGC 2 cut(s) 113, 208
PspN4I GGNNCC 2 cut(s) 304, 996
PspPI GGNCC 2 cut(s) 994, 1087
PspPPI RGGWCCY 1 cut(s) 994
PstNI CAGNNNCTG 1 cut(s) 389
PsuI RGATCY 1 cut(s) 168
PvuII CAGCTG 1 cut(s) 1237
RruI TCGCGA 1 cut(s) 562
RsaI GTAC 2 cut(s) 607, 868
RsaNI GTAC 2 cut(s) 606, 867
RseI CAYNNNNRTG 2 cut(s) 1097, 1148
SacI GAGCTC 1 cut(s) 195
SaqAI TTAA 2 cut(s) 20, 348
Sau3AI GATC 6 cut(s) 168, 460, 487, 669, 685, 708
Sau96I GGNCC 2 cut(s) 994, 1087
ScrFI CCNGG 3 cut(s) 410, 482, 920
SduI GDGCHC 4 cut(s) 195, 307, 990, 1033
SfaNI GCATC 2 cut(s) 810, 1027
SinI GGWCC 1 cut(s) 994
SmiMI CAYNNNNRTG 2 cut(s) 1097, 1148
SmlI CTYRAG 3 cut(s) 989, 1070, 1222
SmoI CTYRAG 3 cut(s) 989, 1070, 1222
SpeI ACTAGT 1 cut(s) 1195
Sse9I AATT 6 cut(s) 29, 379, 525, 759, 966, 1125
SspMI CTAG 4 cut(s) 999, 1013, 1103, 1196
SstI GAGCTC 1 cut(s) 195
StyD4I CCNGG 3 cut(s) 408, 480, 918
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 5 cut(s) 17, 142, 397, 1099, 1115
TaiI ACGT 3 cut(s) 868, 879, 1254
TaqI TCGA 5 cut(s) 338, 672, 711, 855, 1121
TasI AATT 6 cut(s) 29, 379, 525, 759, 966, 1125
TauI GCSGC 4 cut(s) 149, 225, 1092, 1206
TfiI GAWTC 3 cut(s) 509, 600, 1043
Tru1I TTAA 2 cut(s) 20, 348
Tru9I TTAA 2 cut(s) 20, 348
TscAI CASTG 1 cut(s) 210
TseI GCWGC 8 cut(s) 43, 46, 225, 794, 860, 1182, 1234, 1237
TspDTI ATGAA 2 cut(s) 346, 1097
TspGWI ACGGA 3 cut(s) 185, 593, 1227
TspRI CASTG 1 cut(s) 210
Van91I CCANNNNNTGG 1 cut(s) 695
VneI GTGCAC 1 cut(s) 1029
VpaK11BI GGWCC 1 cut(s) 994
XapI RAATTY 1 cut(s) 379
XceI RCATGY 1 cut(s) 542
XmnI GAANNNNTTC 2 cut(s) 513, 652
XspI CTAG 4 cut(s) 999, 1013, 1103, 1196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.