Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0007174

Physical Location & Seq

Genomic Coordinates Forward (+)

4981353 .. 4984372

Gene Structure 3020 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1072400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGGAAATGCGGTAAAAAAAAAAATTGGATCCCATCCAGATTCATTTTGTGGAGATCCTCATATTTTAATCGTGTATCGTACGACATTTGATGCATATGGTGTTGGCAATGATGGTGCTCCTGGGATTGCTGTGCTTCAAGAGTGGTGGGGTGTTGATTTTGAAATTAAGAACCATGCTGTCAAGATTTCTCAACTTGCTCCTGGATTCAAAGCACTTATCCCTGACTTGTATCGTGGGAAGGTGGGTGTTGCTGGATTTTGCATGGGTGGTGCTCTCTCAATTGCAAGTTCTGTTTTGCTCCCTGACGGTGATGCTGTTGTTGCGTTTTATAGAGTGCCGCCATCAGAGCTTGCAGACCCTGCTAAAGCTAAGGCTCCTGTTCAGGCTCATTTTGGAGAGCTTGATAGTTTCGTTGGCTTTTCAGATGTGACGCCTGCCAAGTCTTTGGAGGAGAAGCTGAAAGCATCAGGAATCCCTTACGAGGTGCACATTTATCCCGGCAATGCCCATGCATTCATGAATAGGTCTCAAGAAGGTGCGAAGAGGAGGAAGGACATGGGATTGACTGATGAGGATGAAGCGTCATGTCAGTTGGCTTGGCCTCGCTTCCAGTCATGGATGTCTCGCTATTTGTCCGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

DLH

Protein Analysis

215

Amino Acids

23.15

Weight (kDa)

6.3

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DLH	PF01738	30 - 82	2.6e-08	Dienelactone hydrolase family
DLH	PF01738	80 - 211	3.5e-30	Dienelactone hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32520 AT2G32520 AT2G32520 AT2G32520
fragaria_vesca	FvH4_6g42850
malus_domestica	MD09G1072400.v1.1 MD17G1099100.v1.1 MD17G1099200.v1.1
prunus_persica	Prupe.3G214600_v2.0.a1 Prupe.3G214600_v2.0.a1 Prupe.3G214600_v2.0.a1
pyrus_communis	pycom17g09450
rosa_chinensis	RchiOBHm_Chr2g0158791
rosa_laevigata	RLG00000021113
rosa_multiflora	Rmu_sc0003664.1_g000001 Rmu_sc0038467.1_g000003
rosa_roxburghii	Rroxscaffold_2G00091000
rosa_rugosa	Rorug02G0472400 Rorug02G0472500 Rorug02G0472600
rosa_samantha	Rh2AG538300 Rh2BG551000 Rh2CG521500 Rh2DG560800
rosa_wichuraiana	Rw2G044550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	11, 341, 639
AclWI	GGATC	3 cut(s)	24, 37, 50
AcyI	GRCGYC	1 cut(s)	434
AfaI	GTAC	1 cut(s)	82
AfiI	CCNNNNNNNGG	1 cut(s)	484
AgsI	TTSAA	3 cut(s)	140, 164, 211
AjnI	CCWGG	2 cut(s)	121, 202
AluBI	AGCT	4 cut(s)	352, 371, 403, 460
AluI	AGCT	4 cut(s)	352, 371, 403, 460
Alw21I	GWGCWC	3 cut(s)	121, 277, 492
Alw26I	GTCTC	2 cut(s)	534, 630
Alw44I	GTGCAC	1 cut(s)	488
AlwI	GGATC	3 cut(s)	24, 37, 50
AlwNI	CAGNNNCTG	1 cut(s)	362
AoxI	GGCC	1 cut(s)	602
ApaLI	GTGCAC	1 cut(s)	488
AsuC2I	CCSGG	1 cut(s)	501
AsuHPI	GGTGA	1 cut(s)	323
BaeGI	GKGCMC	1 cut(s)	492
BamHI	GGATCC	1 cut(s)	29
Bbv12I	GWGCWC	3 cut(s)	121, 277, 492
BccI	CCATC	3 cut(s)	42, 107, 352
BciT130I	CCWGG	2 cut(s)	123, 204
BcnI	CCSGG	1 cut(s)	501
BcoDI	GTCTC	2 cut(s)	534, 630
BisI	GCNGC	1 cut(s)	341
BlsI	GCNGC	1 cut(s)	342
Bme1390I	CCNGG	3 cut(s)	123, 204, 501
BmiI	GGNNCC	2 cut(s)	31, 378
BmrFI	CCNGG	3 cut(s)	123, 204, 501
BmsI	GCATC	3 cut(s)	82, 304, 476
Bpu10I	CCTNAGC	1 cut(s)	372
BpuEI	CTTGAG	1 cut(s)	516
BpuMI	CCSGG	1 cut(s)	501
BsaHI	GRCGYC	1 cut(s)	434
BsaI	GGTCTC	1 cut(s)	534
BsaJI	CCNNGG	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	1 cut(s)	484
Bse1I	ACTGG	1 cut(s)	613
Bse3DI	GCAATG	2 cut(s)	115, 511
BseBI	CCWGG	2 cut(s)	123, 204
BseDI	CCNNGG	1 cut(s)	122
BseGI	GGATG	3 cut(s)	34, 583, 627
BseLI	CCNNNNNNNGG	1 cut(s)	484
BseMI	GCAATG	2 cut(s)	115, 511
BseNI	ACTGG	1 cut(s)	613
BseRI	GAGGAG	2 cut(s)	467, 562
BseSI	GKGCMC	1 cut(s)	492
BshFI	GGCC	1 cut(s)	604
BsiHKAI	GWGCWC	3 cut(s)	121, 277, 492
BsiSI	CCGG	1 cut(s)	501
BsiWI	CGTACG	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	484
BsmAI	GTCTC	2 cut(s)	534, 630
BsmI	GAATGC	1 cut(s)	515
BsnI	GGCC	1 cut(s)	604
Bso31I	GGTCTC	1 cut(s)	534
Bsp1286I	GDGCHC	3 cut(s)	121, 277, 492
Bsp143I	GATC	2 cut(s)	29, 55
BspACI	CCGC	3 cut(s)	11, 341, 639
BspANI	GGCC	1 cut(s)	604
BspHI	TCATGA	1 cut(s)	519
BspLI	GGNNCC	2 cut(s)	31, 378
BspPI	GGATC	3 cut(s)	24, 37, 50
BspTNI	GGTCTC	1 cut(s)	534
BsrDI	GCAATG	2 cut(s)	115, 511
BsrI	ACTGG	1 cut(s)	613
BssECI	CCNNGG	1 cut(s)	122
BssMI	GATC	2 cut(s)	29, 55
BssNI	GRCGYC	1 cut(s)	434
Bst2UI	CCWGG	2 cut(s)	123, 204
Bst4CI	ACNGT	1 cut(s)	311
Bst6I	CTCTTC	1 cut(s)	539
BstACI	GRCGYC	1 cut(s)	434
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstC8I	GCNNGC	2 cut(s)	354, 438
BstDEI	CTNAG	1 cut(s)	372
BstF5I	GGATG	3 cut(s)	34, 583, 627
BstKTI	GATC	2 cut(s)	32, 58
BstMAI	GTCTC	2 cut(s)	534, 630
BstMBI	GATC	2 cut(s)	29, 55
BstMWI	GCNNNNNNNGC	3 cut(s)	323, 349, 362
BstNI	CCWGG	2 cut(s)	123, 204
BstSCI	CCNGG	3 cut(s)	121, 202, 499
BstSLI	GKGCMC	1 cut(s)	492
BstX2I	RGATCY	2 cut(s)	29, 55
BstXI	CCANNNNNNTGG	1 cut(s)	448
BstYI	RGATCY	2 cut(s)	29, 55
BsuRI	GGCC	1 cut(s)	604
BtsCI	GGATG	3 cut(s)	34, 583, 627
Cac8I	GCNNGC	2 cut(s)	354, 438
CaiI	CAGNNNCTG	1 cut(s)	362
CciI	TCATGA	1 cut(s)	519
CseI	GACGC	2 cut(s)	442, 573
Csp6I	GTAC	1 cut(s)	81
CspCI	CAANNNNNGTGG	2 cut(s)	128, 163
CviAII	CATG	7 cut(s)	176, 265, 512, 520, 559, 588, 618
CviJI	RGCY	9 cut(s)	352, 371, 377, 389, 403, 420, 460, 599, 604
CviKI_1	RGCY	9 cut(s)	352, 371, 377, 389, 403, 420, 460, 599, 604
CviQI	GTAC	1 cut(s)	81
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	2 cut(s)	31, 57
DpnII	GATC	2 cut(s)	29, 55
Eam1104I	CTCTTC	1 cut(s)	539
EarI	CTCTTC	1 cut(s)	539
Eco31I	GGTCTC	1 cut(s)	534
EcoRII	CCWGG	2 cut(s)	121, 202
EcoT22I	ATGCAT	2 cut(s)	97, 517
FaeI	CATG	7 cut(s)	179, 268, 515, 523, 562, 591, 621
FatI	CATG	7 cut(s)	175, 264, 511, 519, 558, 587, 617
FauNDI	CATATG	1 cut(s)	97
Fnu4HI	GCNGC	1 cut(s)	341
FokI	GGATG	3 cut(s)	21, 590, 634
Fsp4HI	GCNGC	1 cut(s)	341
GluI	GCNGC	1 cut(s)	341
HaeIII	GGCC	1 cut(s)	604
HapII	CCGG	1 cut(s)	501
HgaI	GACGC	2 cut(s)	442, 573
Hin1I	GRCGYC	1 cut(s)	434
Hin1II	CATG	7 cut(s)	179, 268, 515, 523, 562, 591, 621
HinfI	GANTC	3 cut(s)	41, 207, 474
HpaII	CCGG	1 cut(s)	501
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	1 cut(s)	490
Hpy188I	TCNGA	2 cut(s)	349, 427
Hpy188III	TCNNGA	6 cut(s)	38, 140, 184, 471, 520, 533
Hpy8I	GTNNAC	1 cut(s)	490
HpyAV	CCTTC	3 cut(s)	235, 530, 547
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4V	TGCA	6 cut(s)	95, 264, 287, 356, 490, 515
HpyF10VI	GCNNNNNNNGC	3 cut(s)	323, 349, 362
HpyF3I	CTNAG	1 cut(s)	372
Hsp92I	GRCGYC	1 cut(s)	434
Hsp92II	CATG	7 cut(s)	179, 268, 515, 523, 562, 591, 621
Kzo9I	GATC	2 cut(s)	29, 55
LmnI	GCTCC	4 cut(s)	124, 205, 306, 382
LweI	GCATC	3 cut(s)	82, 304, 476
MaeIII	GTNAC	1 cut(s)	430
MalI	GATC	2 cut(s)	31, 57
MboI	GATC	2 cut(s)	29, 55
MboII	GAAGA	1 cut(s)	556
MfeI	CAATTG	1 cut(s)	282
MflI	RGATCY	2 cut(s)	29, 55
MhlI	GDGCHC	3 cut(s)	121, 277, 492
MluCI	AATT	3 cut(s)	24, 165, 282
MnlI	CCTC	7 cut(s)	69, 445, 478, 540, 543, 568, 615
Mph1103I	ATGCAT	2 cut(s)	97, 517
MseI	TTAA	3 cut(s)	68, 168, 643
MspI	CCGG	1 cut(s)	501
MspR9I	CCNGG	3 cut(s)	123, 204, 501
MunI	CAATTG	1 cut(s)	282
Mva1269I	GAATGC	1 cut(s)	515
MvaI	CCWGG	2 cut(s)	123, 204
MwoI	GCNNNNNNNGC	3 cut(s)	323, 349, 362
NciI	CCSGG	1 cut(s)	501
NdeI	CATATG	1 cut(s)	97
NdeII	GATC	2 cut(s)	29, 55
NlaIII	CATG	7 cut(s)	179, 268, 515, 523, 562, 591, 621
NlaIV	GGNNCC	2 cut(s)	31, 378
NmuCI	GTSAC	1 cut(s)	430
NsiI	ATGCAT	2 cut(s)	97, 517
PagI	TCATGA	1 cut(s)	519
PctI	GAATGC	1 cut(s)	515
PfeI	GAWTC	3 cut(s)	41, 207, 474
Pfl23II	CGTACG	1 cut(s)	80
PfoI	TCCNGGA	1 cut(s)	202
PkrI	GCNGC	1 cut(s)	342
Psp6I	CCWGG	2 cut(s)	121, 202
PspGI	CCWGG	2 cut(s)	121, 202
PspLI	CGTACG	1 cut(s)	80
PspN4I	GGNNCC	2 cut(s)	31, 378
PstNI	CAGNNNCTG	1 cut(s)	362
PsuI	RGATCY	2 cut(s)	29, 55
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
SaqAI	TTAA	3 cut(s)	68, 168, 643
SatI	GCNGC	1 cut(s)	341
Sau3AI	GATC	2 cut(s)	29, 55
ScrFI	CCNGG	3 cut(s)	123, 204, 501
SduI	GDGCHC	3 cut(s)	121, 277, 492
SetI	ASST	8 cut(s)	246, 354, 373, 405, 462, 489, 530, 541
SfaNI	GCATC	3 cut(s)	82, 304, 476
SmlI	CTYRAG	1 cut(s)	531
SmoI	CTYRAG	1 cut(s)	531
Sse9I	AATT	3 cut(s)	24, 165, 282
SsiI	CCGC	3 cut(s)	11, 341, 639
StyD4I	CCNGG	3 cut(s)	121, 202, 499
TaaI	ACNGT	1 cut(s)	311
TasI	AATT	3 cut(s)	24, 165, 282
TauI	GCSGC	1 cut(s)	343
TfiI	GAWTC	3 cut(s)	41, 207, 474
Tru1I	TTAA	3 cut(s)	68, 168, 643
Tru9I	TTAA	3 cut(s)	68, 168, 643
TseFI	GTSAC	1 cut(s)	430
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	4 cut(s)	33, 508, 536, 594
VneI	GTGCAC	1 cut(s)	488
Zsp2I	ATGCAT	2 cut(s)	97, 517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.