Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003664.1

Orthogroup ID

OG0007174

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 2881

Gene Structure 2880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003664.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 737 bp

atgctagcatcggttgctgtaaatctgagatcagcagcttccagagccttgtcaaattctctcccaaaccctactttctcactcgcacggactctccctcctcctccgctctctcggttctcggttcgatccatggcggattctgctgccccgttcaagaaagtccaaatccagagagacgataccgcatttgatgcatatgttgttggcaaagaaggtgctcctgggattgtcgtagttcaagagtggtggggtgtagattttgaaataaagaaccatgctgtcaaaatttctgaacttgctcctggattcaaagcacttatccctgacttgtatcggggaaaggttggtttggatgttgcagaagcacaacatttgatggaaggtcttgactggcaaggtgcagtaaaggatatccaggcttcagttaattggctgaaagcaaatggttcaaagaaggttggagttactggattctgcatgggaggtgctctctcaattgcaagttctgttttggtccctgaggtcgatgctgttgttgcattttatggaataccatcatcagagcttgcagaccctgcaaaagctaaggctcctattcaggctcattttggagagcttgatagttttgttggcttttcagatgtcacggctgctaagtctttggaggagaagctgaaagcatcaggagtcccatatgaggtgcacctgtatccaggcaatgcccatgctttcat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

DLH

Protein Analysis

245

Amino Acids

25.99

Weight (kDa)

6.21

Isoelectric Point (pI)

22.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32520 AT2G32520 AT2G32520 AT2G32520
fragaria_vesca	FvH4_6g42850
malus_domestica	MD09G1072400.v1.1 MD17G1099100.v1.1 MD17G1099200.v1.1
prunus_persica	Prupe.3G214600_v2.0.a1 Prupe.3G214600_v2.0.a1 Prupe.3G214600_v2.0.a1
pyrus_communis	pycom17g09450
rosa_chinensis	RchiOBHm_Chr2g0158791
rosa_laevigata	RLG00000021113
rosa_multiflora	Rmu_sc0003664.1_g000001 Rmu_sc0038467.1_g000003
rosa_roxburghii	Rroxscaffold_2G00091000
rosa_rugosa	Rorug02G0472400 Rorug02G0472500 Rorug02G0472600
rosa_samantha	Rh2AG538300 Rh2BG551000 Rh2CG521500 Rh2DG560800
rosa_wichuraiana	Rw2G044550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	109
AciI	CCGC	3 cut(s)	107, 137, 186
AclWI	GGATC	1 cut(s)	123
AcsI	RAATTY	2 cut(s)	55, 288
AcuI	CTGAAG	1 cut(s)	408
AfiI	CCNNNNNNNGG	1 cut(s)	700
AgsI	TTSAA	5 cut(s)	157, 242, 266, 313, 453
AjnI	CCWGG	4 cut(s)	223, 304, 417, 715
AluBI	AGCT	5 cut(s)	38, 568, 587, 619, 676
AluI	AGCT	5 cut(s)	38, 568, 587, 619, 676
Alw21I	GWGCWC	3 cut(s)	223, 493, 708
Alw26I	GTCTC	1 cut(s)	171
Alw44I	GTGCAC	1 cut(s)	704
AlwI	GGATC	1 cut(s)	123
AlwNI	CAGNNNCTG	1 cut(s)	578
ApaLI	GTGCAC	1 cut(s)	704
ApeKI	GCWGC	3 cut(s)	35, 146, 653
ApoI	RAATTY	2 cut(s)	55, 288
AspS9I	GGNCC	1 cut(s)	517
AsuNHI	GCTAGC	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	517
AxyI	CCTNAGG	1 cut(s)	522
BaeGI	GKGCMC	1 cut(s)	708
Bbv12I	GWGCWC	3 cut(s)	223, 493, 708
BbvI	GCAGC	3 cut(s)	47, 133, 640
BccI	CCATC	2 cut(s)	373, 565
BceAI	ACGGC	1 cut(s)	666
BciT130I	CCWGG	4 cut(s)	225, 306, 419, 717
BciVI	GTATCC	1 cut(s)	723
BcoDI	GTCTC	1 cut(s)	171
BfaI	CTAG	1 cut(s)	5
BfuI	GTATCC	1 cut(s)	723
BisI	GCNGC	3 cut(s)	36, 147, 654
BlsI	GCNGC	3 cut(s)	37, 148, 655
Bme1390I	CCNGG	4 cut(s)	225, 306, 419, 717
Bme18I	GGWCC	1 cut(s)	517
BmgT120I	GGNCC	1 cut(s)	517
BmiI	GGNNCC	2 cut(s)	519, 594
BmrFI	CCNGG	4 cut(s)	225, 306, 419, 717
BmsI	GCATC	4 cut(s)	17, 184, 520, 692
BmtI	GCTAGC	1 cut(s)	8
BplI	GAGNNNNNCTC	2 cut(s)	477, 509
Bpu10I	CCTNAGC	1 cut(s)	588
BsaJI	CCNNGG	2 cut(s)	132, 224
BsaXI	ACNNNNNCTCC	4 cut(s)	78, 82, 108, 112
Bsc4I	CCNNNNNNNGG	1 cut(s)	700
Bse1I	ACTGG	2 cut(s)	398, 475
Bse21I	CCTNAGG	1 cut(s)	522
Bse3DI	GCAATG	1 cut(s)	727
BseBI	CCWGG	4 cut(s)	225, 306, 419, 717
BseDI	CCNNGG	2 cut(s)	132, 224
BseGI	GGATG	1 cut(s)	361
BseLI	CCNNNNNNNGG	1 cut(s)	700
BseMI	GCAATG	1 cut(s)	727
BseMII	CTCAG	2 cut(s)	17, 513
BseNI	ACTGG	2 cut(s)	398, 475
BseRI	GAGGAG	3 cut(s)	90, 93, 683
BseSI	GKGCMC	1 cut(s)	708
BseXI	GCAGC	3 cut(s)	47, 133, 640
BsgI	GTGCAG	1 cut(s)	423
BsiHKAI	GWGCWC	3 cut(s)	223, 493, 708
BslFI	GGGAC	2 cut(s)	503, 677
BslI	CCNNNNNNNGG	1 cut(s)	700
BsmAI	GTCTC	1 cut(s)	171
BsmBI	CGTCTC	1 cut(s)	171
BsmFI	GGGAC	2 cut(s)	503, 677
Bsp1286I	GDGCHC	3 cut(s)	223, 493, 708
Bsp143I	GATC	2 cut(s)	29, 128
Bsp19I	CCATGG	1 cut(s)	132
BspACI	CCGC	3 cut(s)	107, 137, 186
BspCNI	CTCAG	2 cut(s)	18, 514
BspLI	GGNNCC	2 cut(s)	519, 594
BspOI	GCTAGC	1 cut(s)	8
BspPI	GGATC	1 cut(s)	123
BsrBI	CCGCTC	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	727
BsrI	ACTGG	2 cut(s)	398, 475
BssECI	CCNNGG	2 cut(s)	132, 224
BssMI	GATC	2 cut(s)	29, 128
BssT1I	CCWWGG	1 cut(s)	132
Bst2UI	CCWGG	4 cut(s)	225, 306, 419, 717
BstAPI	GCANNNNNTGC	3 cut(s)	14, 194, 578
BstC8I	GCNNGC	2 cut(s)	6, 570
BstDEI	CTNAG	4 cut(s)	26, 522, 588, 657
BstDSI	CCRYGG	1 cut(s)	132
BstF5I	GGATG	1 cut(s)	361
BstKTI	GATC	2 cut(s)	32, 131
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	2 cut(s)	29, 128
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 44, 143, 194, 539, 578
BstNI	CCWGG	4 cut(s)	225, 306, 419, 717
BstSCI	CCNGG	4 cut(s)	223, 304, 417, 715
BstSLI	GKGCMC	1 cut(s)	708
BstV1I	GCAGC	3 cut(s)	47, 133, 640
Bsu36I	CCTNAGG	1 cut(s)	522
BsuI	GTATCC	1 cut(s)	723
BtgI	CCRYGG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	361
Cac8I	GCNNGC	2 cut(s)	6, 570
CaiI	CAGNNNCTG	1 cut(s)	578
Cfr13I	GGNCC	1 cut(s)	517
CspCI	CAANNNNNGTGG	2 cut(s)	230, 265
CviAII	CATG	4 cut(s)	133, 278, 481, 728
DdeI	CTNAG	4 cut(s)	26, 522, 588, 657
DpnI	GATC	2 cut(s)	31, 130
DpnII	GATC	2 cut(s)	29, 128
EciI	GGCGGA	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	132
Eco32I	GATATC	1 cut(s)	415
Eco47I	GGWCC	1 cut(s)	517
Eco57I	CTGAAG	1 cut(s)	408
Eco81I	CCTNAGG	1 cut(s)	522
EcoRII	CCWGG	4 cut(s)	223, 304, 417, 715
EcoRV	GATATC	1 cut(s)	415
EcoT14I	CCWWGG	1 cut(s)	132
EcoT22I	ATGCAT	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	132
Esp3I	CGTCTC	1 cut(s)	171
FaeI	CATG	4 cut(s)	136, 281, 484, 731
FaiI	YATR	9 cut(s)	134, 199, 201, 279, 482, 549, 697, 699, 729
FaqI	GGGAC	2 cut(s)	503, 677
FatI	CATG	4 cut(s)	132, 277, 480, 727
FauNDI	CATATG	2 cut(s)	199, 697
Fnu4HI	GCNGC	3 cut(s)	36, 147, 654
FokI	GGATG	1 cut(s)	368
Fsp4HI	GCNGC	3 cut(s)	36, 147, 654
FspBI	CTAG	1 cut(s)	5
GluI	GCNGC	3 cut(s)	36, 147, 654
Hin1II	CATG	4 cut(s)	136, 281, 484, 731
HinfI	GANTC	5 cut(s)	91, 140, 309, 474, 690
Hpy166II	GTNNAC	1 cut(s)	706
Hpy188I	TCNGA	4 cut(s)	27, 295, 565, 643
Hpy188III	TCNNGA	6 cut(s)	42, 157, 172, 242, 389, 687
Hpy8I	GTNNAC	1 cut(s)	706
HpyAV	CCTTC	3 cut(s)	209, 377, 451
HpyCH4V	TGCA	9 cut(s)	197, 362, 404, 480, 503, 542, 572, 581, 706
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 44, 143, 194, 539, 578
HpyF3I	CTNAG	4 cut(s)	26, 522, 588, 657
Hsp92II	CATG	4 cut(s)	136, 281, 484, 731
Kzo9I	GATC	2 cut(s)	29, 128
LmnI	GCTCC	3 cut(s)	226, 307, 598
Lsp1109I	GCAGC	3 cut(s)	47, 133, 640
LweI	GCATC	4 cut(s)	17, 184, 520, 692
MaeI	CTAG	1 cut(s)	5
MaeIII	GTNAC	2 cut(s)	466, 646
MalI	GATC	2 cut(s)	31, 130
MbiI	CCGCTC	1 cut(s)	109
MboI	GATC	2 cut(s)	29, 128
MfeI	CAATTG	1 cut(s)	498
MhlI	GDGCHC	3 cut(s)	223, 493, 708
MluCI	AATT	4 cut(s)	55, 288, 430, 498
MlyI	GAGTC	2 cut(s)	85, 699
MmeI	TCCRAC	1 cut(s)	442
MnlI	CCTC	7 cut(s)	108, 111, 114, 479, 517, 661, 694
Mph1103I	ATGCAT	1 cut(s)	199
MseI	TTAA	1 cut(s)	429
MspR9I	CCNGG	4 cut(s)	225, 306, 419, 717
MunI	CAATTG	1 cut(s)	498
MvaI	CCWGG	4 cut(s)	225, 306, 419, 717
MwoI	GCNNNNNNNGC	6 cut(s)	14, 44, 143, 194, 539, 578
NcoI	CCATGG	1 cut(s)	132
NdeI	CATATG	2 cut(s)	199, 697
NdeII	GATC	2 cut(s)	29, 128
NheI	GCTAGC	1 cut(s)	4
NlaIII	CATG	4 cut(s)	136, 281, 484, 731
NlaIV	GGNNCC	2 cut(s)	519, 594
NmuCI	GTSAC	1 cut(s)	646
NsiI	ATGCAT	1 cut(s)	199
PfeI	GAWTC	3 cut(s)	140, 309, 474
PfoI	TCCNGGA	1 cut(s)	304
PkrI	GCNGC	3 cut(s)	37, 148, 655
PleI	GAGTC	2 cut(s)	85, 698
PpsI	GAGTC	2 cut(s)	85, 698
Psp6I	CCWGG	4 cut(s)	223, 304, 417, 715
PspGI	CCWGG	4 cut(s)	223, 304, 417, 715
PspN4I	GGNNCC	2 cut(s)	519, 594
PspPI	GGNCC	1 cut(s)	517
PstNI	CAGNNNCTG	1 cut(s)	578
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	3 cut(s)	36, 147, 654
Sau3AI	GATC	2 cut(s)	29, 128
Sau96I	GGNCC	1 cut(s)	517
SchI	GAGTC	2 cut(s)	85, 699
ScrFI	CCNGG	4 cut(s)	225, 306, 419, 717
SduI	GDGCHC	3 cut(s)	223, 493, 708
SfaNI	GCATC	4 cut(s)	17, 184, 520, 692
SinI	GGWCC	1 cut(s)	517
Sse9I	AATT	4 cut(s)	55, 288, 430, 498
SsiI	CCGC	3 cut(s)	107, 137, 186
SspMI	CTAG	1 cut(s)	5
StyD4I	CCNGG	4 cut(s)	223, 304, 417, 715
StyI	CCWWGG	1 cut(s)	132
TaqI	TCGA	2 cut(s)	127, 528
TasI	AATT	4 cut(s)	55, 288, 430, 498
TfiI	GAWTC	3 cut(s)	140, 309, 474
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TseFI	GTSAC	1 cut(s)	646
TseI	GCWGC	3 cut(s)	35, 146, 653
Tsp45I	GTSAC	1 cut(s)	646
TspDTI	ATGAA	1 cut(s)	724
TspGWI	ACGGA	1 cut(s)	103
VneI	GTGCAC	1 cut(s)	704
VpaK11BI	GGWCC	1 cut(s)	517
XapI	RAATTY	2 cut(s)	55, 288
XspI	CTAG	1 cut(s)	5
Zsp2I	ATGCAT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.