MD09G1073300.v1.1

Cytochrome p450

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
5088511 .. 5091448
2938 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1073300.v1.1.491

Sequence Viewer

Length: 1395 bp
ATGGCTGTCTTCATGGTAGTGGTTCTCTGTTTCCTCTGTTTGCTCTGCATCTGCTCTGCTCTTCTCAGATGGAATGAAGTTAGATACAGAAAGAAAGGCCTCCCTCCAGGCACAATGGGTTGGCCAGTCTTTGGTGAAACCACTGAGTTTCTCAAACAAGGTCCAAACTTCATGAAAAACCAGAGAGCAAGGTATGGGAGTTTTTTCAAATCCCACATATTGGGGTGCCCTACAGTGGTGTCCATGGATCCAGAGGTGAACAGATACATCCTAATGAATGAAGCCAAAGGGCTGGTTCCTGGCTACCCACAATCCATGTTGGATATTTTGGGAAAATGCAACATTGCAGCAGTCCATGGCTCCACTCACAAGTACATGAGAGGGGCACTGCTTGCCCTCATCAACCCTACCATGATCAGAGACCAGATTTTGCCCAAAATTGATGAGTTCATGAGATCCCACCTCACAGGCTGGGACAACCAAGTTATCAACATTCAAGAAAAAACCAAAGAGATGGCACTTTTATCATCTCTGAAGCAGATTGCAGGCATTGAATCAAGCTCAATCACTCCAGCATTCAAGACAGAGTTCTTCAAGCTTGTGCTAGGCACCATTTCATTGCCTATTGATCTTCCTGGCACGAATTATTGCCGCGGTTTTCAGGCAAGGAAGAATATTGTAAACATGTTGGAAAAGCTTATAGAGGAGAGAAGAGCTTCCAAAGAAGTCCATCAGGACATGCTTGGCTGCTTACTGAGAAGTGATGAAAACAAAAACAAACTAAGTGACGAAGAAATAATCGATATGGTCGTCACGATTTTGTATTCGGGTTATGAGACCGTTTCGACTACTTCCATGATGGCTGTCAAGTACCTCCATGATCATCCCAAAGTGCTTGAAGAACTCAGAAAAGAGCATTTGGCAATTAGAGAAAAGAAAAATCCAGAGGACCCAATTGACTGGAACGACTTGAAATCTATGAAGTTTACTCGTGCGGTAATATTTGAGACCTCAAGATTAGCCACCATTGTGAATGGGGTATTAAGAAAAACCACTCAAGATATGGAACTAAATGGATATTTGATTCCGAAAGGATGGAGAATCTATGTGTATACAAGAGAGATTAATTATGACTCCTTTCTGTATCCGGAACCTTTAACCTTCAACCCATGGAGATGGCTGGACAGGAGCTTGGAGTCTTCAACCTTCTTCTTTATATTTGGAGGTGGCACCAGACTCTGTCCAGGAAAGGAGCTAGGGATAGCAGAAATTTCAACTTTCCTGCACTACTTTGTAACTAGATACAGGTGGGAAGAAGTTGGGGGAGACAAACTGATGAAATTTCCAAGAGTAGAGGCCCCGAATGGACTGCACCTTAGGGTTTCATCTTACTGA

Protein Analysis

465

Amino Acids

53.33

Weight (kDa)

8.86

Isoelectric Point (pI)

43.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 35 - 448 4.5e-57 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 225, 608, 1229
AccB7I CCANNNNNTGG 2 cut(s) 131, 220
AccI GTMKAC 1 cut(s) 1112
AccII CGCG 1 cut(s) 654
AccIII TCCGGA 1 cut(s) 1147
AciI CCGC 3 cut(s) 652, 654, 995
AclWI GGATC 3 cut(s) 242, 255, 450
AcoI YGGCCR 1 cut(s) 122
AcsI RAATTY 2 cut(s) 1269, 1340
AcuI CTGAAG 1 cut(s) 554
AfaI GTAC 2 cut(s) 374, 872
AfiI CCNNNNNNNGG 3 cut(s) 131, 220, 235
AflIII ACRYGT 1 cut(s) 684
AjnI CCWGG 4 cut(s) 106, 298, 634, 1243
AleI CACNNNNGTG 1 cut(s) 1028
AluBI AGCT 6 cut(s) 561, 598, 697, 716, 1191, 1255
AluI AGCT 6 cut(s) 561, 598, 697, 716, 1191, 1255
Alw26I GTCTC 4 cut(s) 414, 830, 1001, 1320
AlwI GGATC 3 cut(s) 242, 255, 450
AlwNI CAGNNNCTG 1 cut(s) 1239
Aor13HI TCCGGA 1 cut(s) 1147
AoxI GGCC 3 cut(s) 97, 122, 1356
ApeKI GCWGC 2 cut(s) 347, 747
ApoI RAATTY 2 cut(s) 1269, 1340
AseI ATTAAT 1 cut(s) 1125
Asp700I GAANNNNTTC 1 cut(s) 715
AspS9I GGNCC 3 cut(s) 161, 949, 1357
AsuHPI GGTGA 2 cut(s) 146, 268
AvaII GGWCC 2 cut(s) 161, 949
AxyI CCTNAGG 1 cut(s) 1376
BaeGI GKGCMC 2 cut(s) 230, 388
BalI TGGCCA 1 cut(s) 124
BamHI GGATCC 1 cut(s) 247
BanI GGYRCC 3 cut(s) 225, 608, 1229
BauI CACGAG 1 cut(s) 990
BbsI GAAGAC 1 cut(s) 1191
BbvI GCAGC 2 cut(s) 359, 734
BccI CCATC 6 cut(s) 63, 508, 738, 853, 1089, 1170
BcgI CGANNNNNNTGC 2 cut(s) 1351, 1385
BciT130I CCWGG 4 cut(s) 108, 300, 636, 1245
BciVI GTATCC 1 cut(s) 1155
BclI TGATCA 2 cut(s) 414, 880
BcoDI GTCTC 4 cut(s) 414, 830, 1001, 1320
BfaI CTAG 3 cut(s) 605, 1256, 1299
BfmI CTRYAG 1 cut(s) 231
BfuI GTATCC 1 cut(s) 1155
BisI GCNGC 3 cut(s) 348, 652, 748
BlsI GCNGC 3 cut(s) 349, 653, 749
Bme1390I CCNGG 4 cut(s) 108, 300, 636, 1245
Bme18I GGWCC 2 cut(s) 161, 949
BmgT120I GGNCC 3 cut(s) 161, 949, 1357
BmiI GGNNCC 9 cut(s) 227, 249, 297, 361, 610, 951, 1152, 1231, 1359
BmrFI CCNGG 4 cut(s) 108, 300, 636, 1245
BmsI GCATC 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 1191
BpmI CTGGAG 2 cut(s) 90, 555
BpuEI CTTGAG 2 cut(s) 997, 1041
Bsa29I ATCGAT 1 cut(s) 801
BsaI GGTCTC 3 cut(s) 414, 830, 1001
BsaJI CCNNGG 4 cut(s) 243, 355, 652, 1169
BsaWI WCCGGW 1 cut(s) 1147
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 220, 235
Bse1I ACTGG 2 cut(s) 125, 965
Bse21I CCTNAGG 1 cut(s) 1376
Bse3DI GCAATG 2 cut(s) 342, 617
BseAI TCCGGA 1 cut(s) 1147
BseBI CCWGG 4 cut(s) 108, 300, 636, 1245
BseCI ATCGAT 1 cut(s) 801
BseDI CCNNGG 4 cut(s) 243, 355, 652, 1169
BseGI GGATG 3 cut(s) 267, 883, 1100
BseLI CCNNNNNNNGG 3 cut(s) 131, 220, 235
BseMI GCAATG 2 cut(s) 342, 617
BseMII CTCAG 4 cut(s) 79, 135, 746, 919
BseNI ACTGG 2 cut(s) 125, 965
BseRI GAGGAG 1 cut(s) 719
BseSI GKGCMC 2 cut(s) 230, 388
BseXI GCAGC 2 cut(s) 359, 734
BseYI CCCAGC 1 cut(s) 471
BsgI GTGCAG 2 cut(s) 1268, 1355
Bsh1236I CGCG 1 cut(s) 654
BshFI GGCC 3 cut(s) 99, 124, 1358
BshNI GGYRCC 3 cut(s) 225, 608, 1229
BshVI ATCGAT 1 cut(s) 801
BsiSI CCGG 1 cut(s) 1148
BslFI GGGAC 1 cut(s) 488
BslI CCNNNNNNNGG 3 cut(s) 131, 220, 235
BsmAI GTCTC 4 cut(s) 414, 830, 1001, 1320
BsmFI GGGAC 1 cut(s) 488
BsmI GAATGC 1 cut(s) 575
BsnI GGCC 3 cut(s) 99, 124, 1358
Bso31I GGTCTC 3 cut(s) 414, 830, 1001
Bsp1286I GDGCHC 2 cut(s) 230, 388
Bsp13I TCCGGA 1 cut(s) 1147
Bsp143I GATC 5 cut(s) 247, 414, 455, 628, 880
Bsp19I CCATGG 3 cut(s) 243, 355, 1169
BspACI CCGC 3 cut(s) 652, 654, 995
BspANI GGCC 3 cut(s) 99, 124, 1358
BspCNI CTCAG 4 cut(s) 78, 136, 747, 918
BspDI ATCGAT 1 cut(s) 801
BspEI TCCGGA 1 cut(s) 1147
BspFNI CGCG 1 cut(s) 654
BspHI TCATGA 2 cut(s) 171, 450
BspLI GGNNCC 9 cut(s) 227, 249, 297, 361, 610, 951, 1152, 1231, 1359
BspPI GGATC 3 cut(s) 242, 255, 450
BspQI GCTCTTC 2 cut(s) 66, 706
BspT107I GGYRCC 3 cut(s) 225, 608, 1229
BspTNI GGTCTC 3 cut(s) 414, 830, 1001
BsrDI GCAATG 2 cut(s) 342, 617
BsrI ACTGG 2 cut(s) 125, 965
BssECI CCNNGG 4 cut(s) 243, 355, 652, 1169
BssMI GATC 5 cut(s) 247, 414, 455, 628, 880
BssNAI GTATAC 1 cut(s) 1113
BssSI CACGAG 1 cut(s) 990
BssT1I CCWWGG 3 cut(s) 243, 355, 1169
Bst1107I GTATAC 1 cut(s) 1113
Bst2BI CACGAG 1 cut(s) 990
Bst2UI CCWGG 4 cut(s) 108, 300, 636, 1245
Bst4CI ACNGT 2 cut(s) 235, 841
Bst6I CTCTTC 2 cut(s) 66, 706
BstAPI GCANNNNNTGC 1 cut(s) 392
BstC8I GCNNGC 2 cut(s) 393, 547
BstDEI CTNAG 6 cut(s) 65, 144, 755, 782, 905, 1376
BstDSI CCRYGG 4 cut(s) 243, 355, 652, 1169
BstF5I GGATG 3 cut(s) 267, 883, 1100
BstFNI CGCG 1 cut(s) 654
BstKTI GATC 5 cut(s) 250, 417, 458, 631, 883
BstMAI GTCTC 4 cut(s) 414, 830, 1001, 1320
BstMBI GATC 5 cut(s) 247, 414, 455, 628, 880
BstMWI GCNNNNNNNGC 1 cut(s) 392
BstNI CCWGG 4 cut(s) 108, 300, 636, 1245
BstNSI RCATGY 2 cut(s) 688, 742
BstSCI CCNGG 4 cut(s) 106, 298, 634, 1243
BstSFI CTRYAG 1 cut(s) 231
BstSLI GKGCMC 2 cut(s) 230, 388
BstUI CGCG 1 cut(s) 654
BstV1I GCAGC 2 cut(s) 359, 734
BstV2I GAAGAC 1 cut(s) 1191
BstX2I RGATCY 2 cut(s) 247, 455
BstXI CCANNNNNNTGG 4 cut(s) 292, 514, 960, 1176
BstYI RGATCY 2 cut(s) 247, 455
BstZ17I GTATAC 1 cut(s) 1113
Bsu15I ATCGAT 1 cut(s) 801
Bsu36I CCTNAGG 1 cut(s) 1376
BsuI GTATCC 1 cut(s) 1155
BsuRI GGCC 3 cut(s) 99, 124, 1358
BsuTUI ATCGAT 1 cut(s) 801
BtgI CCRYGG 4 cut(s) 243, 355, 652, 1169
BtsCI GGATG 3 cut(s) 267, 883, 1100
BtsI GCAGTG 1 cut(s) 386
BtsIMutI CAGTG 3 cut(s) 141, 240, 386
Cac8I GCNNGC 2 cut(s) 393, 547
CaiI CAGNNNCTG 1 cut(s) 1239
CciI TCATGA 2 cut(s) 171, 450
Cfr13I GGNCC 3 cut(s) 161, 949, 1357
Cfr42I CCGCGG 1 cut(s) 655
ClaI ATCGAT 1 cut(s) 801
Csp6I GTAC 2 cut(s) 373, 871
CviQI GTAC 2 cut(s) 373, 871
DdeI CTNAG 6 cut(s) 65, 144, 755, 782, 905, 1376
DpnI GATC 5 cut(s) 249, 416, 457, 630, 882
DpnII GATC 5 cut(s) 247, 414, 455, 628, 880
EaeI YGGCCR 1 cut(s) 122
Eam1104I CTCTTC 2 cut(s) 66, 706
EarI CTCTTC 2 cut(s) 66, 706
Eco130I CCWWGG 3 cut(s) 243, 355, 1169
Eco147I AGGCCT 1 cut(s) 99
Eco31I GGTCTC 3 cut(s) 414, 830, 1001
Eco47I GGWCC 2 cut(s) 161, 949
Eco57I CTGAAG 1 cut(s) 554
Eco81I CCTNAGG 1 cut(s) 1376
EcoO109I RGGNCCY 2 cut(s) 949, 1357
EcoRII CCWGG 4 cut(s) 106, 298, 634, 1243
EcoT14I CCWWGG 3 cut(s) 243, 355, 1169
ErhI CCWWGG 3 cut(s) 243, 355, 1169
FaqI GGGAC 1 cut(s) 488
FbaI TGATCA 2 cut(s) 414, 880
FblI GTMKAC 1 cut(s) 1112
Fnu4HI GCNGC 3 cut(s) 348, 652, 748
FokI GGATG 3 cut(s) 254, 870, 1107
Fsp4HI GCNGC 3 cut(s) 348, 652, 748
FspBI CTAG 3 cut(s) 605, 1256, 1299
GluI GCNGC 3 cut(s) 348, 652, 748
GsaI CCCAGC 1 cut(s) 475
GsuI CTGGAG 2 cut(s) 90, 555
HaeIII GGCC 3 cut(s) 99, 124, 1358
HapII CCGG 1 cut(s) 1148
HindIII AAGCTT 2 cut(s) 596, 695
HinfI GANTC 6 cut(s) 554, 1084, 1101, 1133, 1196, 1236
HpaII CCGG 1 cut(s) 1148
HphI GGTGA 2 cut(s) 146, 268
Hpy166II GTNNAC 4 cut(s) 259, 682, 987, 1113
Hpy188I TCNGA 5 cut(s) 68, 419, 534, 908, 1089
Hpy8I GTNNAC 4 cut(s) 259, 682, 987, 1113
HpyAV CCTTC 2 cut(s) 1171, 1216
HpyCH4III ACNGT 2 cut(s) 235, 841
HpyCH4V TGCA 6 cut(s) 48, 339, 347, 545, 1285, 1372
HpyF10VI GCNNNNNNNGC 1 cut(s) 392
HpyF3I CTNAG 6 cut(s) 65, 144, 755, 782, 905, 1376
Kpn2I TCCGGA 1 cut(s) 1147
Ksp22I TGATCA 2 cut(s) 414, 880
KspI CCGCGG 1 cut(s) 655
Kzo9I GATC 5 cut(s) 247, 414, 455, 628, 880
LguI GCTCTTC 2 cut(s) 66, 706
LmnI GCTCC 3 cut(s) 365, 1188, 1252
Lsp1109I GCAGC 2 cut(s) 359, 734
LweI GCATC 1 cut(s) 57
MaeI CTAG 3 cut(s) 605, 1256, 1299
MaeIII GTNAC 3 cut(s) 785, 811, 1294
MalI GATC 5 cut(s) 249, 416, 457, 630, 882
MboI GATC 5 cut(s) 247, 414, 455, 628, 880
MfeI CAATTG 1 cut(s) 954
MflI RGATCY 2 cut(s) 247, 455
MhlI GDGCHC 2 cut(s) 230, 388
MlsI TGGCCA 1 cut(s) 124
MluCI AATT 7 cut(s) 438, 643, 924, 954, 1126, 1269, 1340
MluNI TGGCCA 1 cut(s) 124
MlyI GAGTC 3 cut(s) 1127, 1205, 1230
MmeI TCCRAC 2 cut(s) 300, 669
Mox20I TGGCCA 1 cut(s) 124
MroI TCCGGA 1 cut(s) 1147
MroXI GAANNNNTTC 1 cut(s) 715
MscI TGGCCA 1 cut(s) 124
MseI TTAA 3 cut(s) 1043, 1125, 1157
MslI CAYNNNNRTG 4 cut(s) 17, 272, 1028, 1174
Msp20I TGGCCA 1 cut(s) 124
MspA1I CMGCKG 1 cut(s) 654
MspI CCGG 1 cut(s) 1148
MspR9I CCNGG 4 cut(s) 108, 300, 636, 1245
MunI CAATTG 1 cut(s) 954
Mva1269I GAATGC 1 cut(s) 575
MvaI CCWGG 4 cut(s) 108, 300, 636, 1245
MvnI CGCG 1 cut(s) 654
MwoI GCNNNNNNNGC 1 cut(s) 392
NcoI CCATGG 3 cut(s) 243, 355, 1169
NdeII GATC 5 cut(s) 247, 414, 455, 628, 880
NlaIV GGNNCC 9 cut(s) 227, 249, 297, 361, 610, 951, 1152, 1231, 1359
NmuCI GTSAC 2 cut(s) 785, 811
NspI RCATGY 2 cut(s) 688, 742
OliI CACNNNNGTG 1 cut(s) 1028
PagI TCATGA 2 cut(s) 171, 450
PceI AGGCCT 1 cut(s) 99
PciI ACATGT 1 cut(s) 684
PciSI GCTCTTC 2 cut(s) 66, 706
PcsI WCGNNNNNNNCGW 1 cut(s) 807
PctI GAATGC 1 cut(s) 575
PdmI GAANNNNTTC 1 cut(s) 715
PfeI GAWTC 3 cut(s) 554, 1084, 1101
PflFI GACNNNGTC 1 cut(s) 1239
PflMI CCANNNNNTGG 2 cut(s) 131, 220
PfoI TCCNGGA 1 cut(s) 1243
PkrI GCNGC 3 cut(s) 349, 653, 749
PleI GAGTC 3 cut(s) 1127, 1204, 1230
PpsI GAGTC 3 cut(s) 1127, 1204, 1230
PpuMI RGGWCCY 1 cut(s) 949
PscI ACATGT 1 cut(s) 684
PshBI ATTAAT 1 cut(s) 1125
Psp5II RGGWCCY 1 cut(s) 949
Psp6I CCWGG 4 cut(s) 106, 298, 634, 1243
PspFI CCCAGC 1 cut(s) 471
PspGI CCWGG 4 cut(s) 106, 298, 634, 1243
PspN4I GGNNCC 9 cut(s) 227, 249, 297, 361, 610, 951, 1152, 1231, 1359
PspPI GGNCC 3 cut(s) 161, 949, 1357
PspPPI RGGWCCY 1 cut(s) 949
PstNI CAGNNNCTG 1 cut(s) 1239
PsuI RGATCY 2 cut(s) 247, 455
PsyI GACNNNGTC 1 cut(s) 1239
RsaI GTAC 2 cut(s) 374, 872
RsaNI GTAC 2 cut(s) 373, 871
RseI CAYNNNNRTG 4 cut(s) 17, 272, 1028, 1174
SacII CCGCGG 1 cut(s) 655
SapI GCTCTTC 2 cut(s) 66, 706
SaqAI TTAA 3 cut(s) 1043, 1125, 1157
SatI GCNGC 3 cut(s) 348, 652, 748
Sau3AI GATC 5 cut(s) 247, 414, 455, 628, 880
Sau96I GGNCC 3 cut(s) 161, 949, 1357
SchI GAGTC 3 cut(s) 1127, 1205, 1230
ScrFI CCNGG 4 cut(s) 108, 300, 636, 1245
SduI GDGCHC 2 cut(s) 230, 388
SfaNI GCATC 1 cut(s) 57
SfcI CTRYAG 1 cut(s) 231
Sfr303I CCGCGG 1 cut(s) 655
SgrBI CCGCGG 1 cut(s) 655
SinI GGWCC 2 cut(s) 161, 949
SmiMI CAYNNNNRTG 4 cut(s) 17, 272, 1028, 1174
SmlI CTYRAG 2 cut(s) 1012, 1056
SmoI CTYRAG 2 cut(s) 1012, 1056
Sse9I AATT 7 cut(s) 438, 643, 924, 954, 1126, 1269, 1340
SseBI AGGCCT 1 cut(s) 99
SsiI CCGC 3 cut(s) 652, 654, 995
SspI AATATT 2 cut(s) 676, 1002
SspMI CTAG 3 cut(s) 605, 1256, 1299
StuI AGGCCT 1 cut(s) 99
StyD4I CCNGG 4 cut(s) 106, 298, 634, 1243
StyI CCWWGG 3 cut(s) 243, 355, 1169
TaaI ACNGT 2 cut(s) 235, 841
TaqI TCGA 2 cut(s) 801, 845
TasI AATT 7 cut(s) 438, 643, 924, 954, 1126, 1269, 1340
TatI WGTACW 1 cut(s) 372
TauI GCSGC 1 cut(s) 654
TfiI GAWTC 3 cut(s) 554, 1084, 1101
Tru1I TTAA 3 cut(s) 1043, 1125, 1157
Tru9I TTAA 3 cut(s) 1043, 1125, 1157
TscAI CASTG 3 cut(s) 148, 240, 393
TseFI GTSAC 2 cut(s) 785, 811
TseI GCWGC 2 cut(s) 347, 747
Tsp45I GTSAC 2 cut(s) 785, 811
TspRI CASTG 3 cut(s) 148, 240, 393
Tth111I GACNNNGTC 1 cut(s) 1239
Van91I CCANNNNNTGG 2 cut(s) 131, 220
VpaK11BI GGWCC 2 cut(s) 161, 949
VspI ATTAAT 1 cut(s) 1125
XapI RAATTY 2 cut(s) 1269, 1340
XceI RCATGY 2 cut(s) 688, 742
XcmI CCANNNNNNNNNTGG 1 cut(s) 1060
XmiI GTMKAC 1 cut(s) 1112
XmnI GAANNNNTTC 1 cut(s) 715
XspI CTAG 3 cut(s) 605, 1256, 1299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.