Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007749

Physical Location & Seq

Genomic Coordinates Forward (+)

64326357 .. 64327279

Gene Structure 923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0512600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCATCCATTGATGCAGTTACAGCGAGTTTCGTTGTCTCTCTTGCTCTCGCTGAAGGGGGCAGAGCCCCTGACCTGGGGAAGACTAGCGGTGGCCCGGTGAGCAGGTCCACCCAATCTTTCCTCATCGGCAAACCATTGATCCGTAAGCTGATCGATCCAAAGGCTTTCATGACTCACTTCAACCGGACTTGGATGGTGGATAAAGAATTCAGGATTCAAGAACGAGCCGGGGATCTGTTTTTGTTCTCCTTTGCTTCTGTACATGATCGTAACAAATTCGAGCACCTGAAAGGGAGACGTTCTCCGTGTGGACTCCTCATTTATGCTGGACTCTCTTGTGAGGAGCCAATCGTGACAATCCCTACATATAGGGTTCTGCATTTTTCTGGACCTTCGACTTCCGGGGGTCTCTTTGCTTTCTCAGCAAAGAACAAGCGGGATCTCTTCACAACCACTGCTTCTTCTTCCATCCCCATGAAGAAGAAGCCAGTTATTCGTCGAGTGAAGTGTTCAATTCCTAATCCTACTTCTCTTACTACTGCGGTACCCAAAGCAGAGAATACTGAGGTTGCTGGTTCTGGTTTGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0003674 GO:0003824 GO:0004497 GO:0006091 GO:0006629 GO:0006694 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009647 GO:0009791 GO:0009987 GO:0010268 GO:0010817 GO:0016043 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0022900 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044237 GO:0044238 GO:0048856 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

197

Amino Acids

21.4

Weight (kDa)

9.92

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30180 AT5G38970 AT5G38970 AT5G38970 AT5G38970
fragaria_vesca	FvH4_6g46500 FvH4_6g46500 FvH4_6g46500
malus_domestica	MD09G1073300.v1.1 MD17G1064800.v1.1
prunus_persica	Prupe.3G250000_v2.0.a1 Prupe.3G250000_v2.0.a1
pyrus_communis	pycom09g00070 pycom17g06480
rosa_chinensis	RchiOBHm_Chr2g0165151
rosa_laevigata	RLG00000021512
rosa_roxburghii	Rroxscaffold_2G00085990
rosa_rugosa	Rorug02G0512600 Rorug02G0512700
rosa_samantha	Rh2AG580900 Rh2BG592200 Rh2CG562900 Rh2DG602200
rosa_wichuraiana	Rw2G048240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	96
Acc65I	GGTACC	1 cut(s)	547
AccB1I	GGYRCC	1 cut(s)	547
AciI	CCGC	3 cut(s)	90, 439, 545
AclWI	GGATC	4 cut(s)	136, 152, 243, 450
AcsI	RAATTY	2 cut(s)	209, 278
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	2 cut(s)	264, 549
AfiI	CCNNNNNNNGG	2 cut(s)	76, 77
AgsI	TTSAA	3 cut(s)	184, 221, 516
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	3 cut(s)	43, 292, 416
AlwI	GGATC	4 cut(s)	136, 152, 243, 450
AoxI	GGCC	1 cut(s)	94
ApoI	RAATTY	2 cut(s)	209, 278
Asp718I	GGTACC	1 cut(s)	547
AspS9I	GGNCC	3 cut(s)	95, 108, 392
AsuC2I	CCSGG	3 cut(s)	98, 232, 406
AsuHPI	GGTGA	1 cut(s)	112
AvaII	GGWCC	2 cut(s)	108, 392
BaeI	ACNNNNGTAYC	2 cut(s)	531, 564
BanI	GGYRCC	1 cut(s)	547
BanII	GRGCYC	1 cut(s)	70
BbsI	GAAGAC	1 cut(s)	89
Bbv12I	GWGCWC	1 cut(s)	288
BccI	CCATC	2 cut(s)	190, 479
BciT130I	CCWGG	1 cut(s)	77
BcnI	CCSGG	3 cut(s)	98, 232, 406
BcoDI	GTCTC	3 cut(s)	43, 292, 416
BfaI	CTAG	1 cut(s)	87
BfuAI	ACCTGC	1 cut(s)	96
Bme1390I	CCNGG	4 cut(s)	77, 98, 232, 406
Bme18I	GGWCC	2 cut(s)	108, 392
BmgT120I	GGNCC	3 cut(s)	95, 108, 392
BmiI	GGNNCC	2 cut(s)	348, 549
BmrFI	CCNGG	4 cut(s)	77, 98, 232, 406
BmsI	GCATC	2 cut(s)	4, 14
BpiI	GAAGAC	1 cut(s)	89
BplI	GAGNNNNNCTC	2 cut(s)	289, 321
BpuMI	CCSGG	3 cut(s)	98, 232, 406
Bsa29I	ATCGAT	1 cut(s)	156
BsaI	GGTCTC	1 cut(s)	416
BsaJI	CCNNGG	3 cut(s)	76, 231, 405
BsaWI	WCCGGW	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 77
Bse1I	ACTGG	1 cut(s)	491
BseBI	CCWGG	1 cut(s)	77
BseCI	ATCGAT	1 cut(s)	156
BseDI	CCNNGG	3 cut(s)	76, 231, 405
BseGI	GGATG	3 cut(s)	5, 201, 471
BseLI	CCNNNNNNNGG	2 cut(s)	76, 77
BseMII	CTCAG	2 cut(s)	438, 558
BseNI	ACTGG	1 cut(s)	491
BseRI	GAGGAG	2 cut(s)	308, 359
BshFI	GGCC	1 cut(s)	96
BshNI	GGYRCC	1 cut(s)	547
BshVI	ATCGAT	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	4 cut(s)	98, 187, 231, 405
BslI	CCNNNNNNNGG	2 cut(s)	76, 77
BsmAI	GTCTC	3 cut(s)	43, 292, 416
BsmBI	CGTCTC	1 cut(s)	292
BsnI	GGCC	1 cut(s)	96
Bso31I	GGTCTC	1 cut(s)	416
Bsp1286I	GDGCHC	2 cut(s)	70, 288
Bsp1407I	TGTACA	1 cut(s)	262
Bsp143I	GATC	6 cut(s)	141, 153, 157, 235, 268, 442
BspACI	CCGC	3 cut(s)	90, 439, 545
BspANI	GGCC	1 cut(s)	96
BspCNI	CTCAG	2 cut(s)	437, 559
BspDI	ATCGAT	1 cut(s)	156
BspHI	TCATGA	1 cut(s)	171
BspLI	GGNNCC	2 cut(s)	348, 549
BspMI	ACCTGC	1 cut(s)	96
BspPI	GGATC	4 cut(s)	136, 152, 243, 450
BspT107I	GGYRCC	1 cut(s)	547
BspTNI	GGTCTC	1 cut(s)	416
BsrGI	TGTACA	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	491
BssECI	CCNNGG	3 cut(s)	76, 231, 405
BssMI	GATC	6 cut(s)	141, 153, 157, 235, 268, 442
Bst2UI	CCWGG	1 cut(s)	77
Bst6I	CTCTTC	1 cut(s)	452
BstAUI	TGTACA	1 cut(s)	262
BstDEI	CTNAG	2 cut(s)	424, 567
BstF5I	GGATG	3 cut(s)	5, 201, 471
BstKTI	GATC	6 cut(s)	144, 156, 160, 238, 271, 445
BstMAI	GTCTC	3 cut(s)	43, 292, 416
BstMBI	GATC	6 cut(s)	141, 153, 157, 235, 268, 442
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 102, 425
BstNI	CCWGG	1 cut(s)	77
BstSCI	CCNGG	4 cut(s)	75, 96, 230, 404
BstV2I	GAAGAC	1 cut(s)	89
BstX2I	RGATCY	2 cut(s)	235, 442
BstYI	RGATCY	2 cut(s)	235, 442
Bsu15I	ATCGAT	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	96
BsuTUI	ATCGAT	1 cut(s)	156
BtsCI	GGATG	3 cut(s)	5, 201, 471
BtsI	GCAGTG	1 cut(s)	456
BtsIMutI	CAGTG	1 cut(s)	456
BveI	ACCTGC	1 cut(s)	96
CciI	TCATGA	1 cut(s)	171
Cfr13I	GGNCC	3 cut(s)	95, 108, 392
ClaI	ATCGAT	1 cut(s)	156
Csp6I	GTAC	2 cut(s)	263, 548
CviAII	CATG	3 cut(s)	172, 266, 478
CviJI	RGCY	7 cut(s)	68, 96, 151, 167, 230, 349, 490
CviKI_1	RGCY	7 cut(s)	68, 96, 151, 167, 230, 349, 490
CviQI	GTAC	2 cut(s)	263, 548
DdeI	CTNAG	2 cut(s)	424, 567
DpnI	GATC	6 cut(s)	143, 155, 159, 237, 270, 444
DpnII	GATC	6 cut(s)	141, 153, 157, 235, 268, 442
Eam1104I	CTCTTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	452
Eco24I	GRGCYC	1 cut(s)	70
Eco31I	GGTCTC	1 cut(s)	416
Eco47I	GGWCC	2 cut(s)	108, 392
Eco57I	CTGAAG	1 cut(s)	75
EcoRI	GAATTC	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	70
Esp3I	CGTCTC	1 cut(s)	292
FaeI	CATG	3 cut(s)	175, 269, 481
FaiI	YATR	6 cut(s)	173, 267, 327, 370, 372, 479
FatI	CATG	3 cut(s)	171, 265, 477
FauI	CCCGC	1 cut(s)	432
FokI	GGATG	2 cut(s)	208, 458
FriOI	GRGCYC	1 cut(s)	70
FspBI	CTAG	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	96
HapII	CCGG	4 cut(s)	98, 187, 231, 405
Hin1II	CATG	3 cut(s)	175, 269, 481
HinfI	GANTC	4 cut(s)	175, 217, 315, 333
HpaII	CCGG	4 cut(s)	98, 187, 231, 405
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	2 cut(s)	111, 314
Hpy188III	TCNNGA	5 cut(s)	172, 214, 221, 355, 390
Hpy8I	GTNNAC	2 cut(s)	111, 314
Hpy99I	CGWCG	1 cut(s)	504
HpyAV	CCTTC	2 cut(s)	50, 405
HpyCH4IV	ACGT	1 cut(s)	301
HpyCH4V	TGCA	2 cut(s)	17, 382
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 102, 425
HpyF3I	CTNAG	2 cut(s)	424, 567
HpySE526I	ACGT	1 cut(s)	301
Hsp92II	CATG	3 cut(s)	175, 269, 481
KpnI	GGTACC	1 cut(s)	551
Kzo9I	GATC	6 cut(s)	141, 153, 157, 235, 268, 442
LmnI	GCTCC	1 cut(s)	346
LweI	GCATC	2 cut(s)	4, 14
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	1 cut(s)	301
MaeIII	GTNAC	3 cut(s)	19, 272, 355
MalI	GATC	6 cut(s)	143, 155, 159, 237, 270, 444
MboI	GATC	6 cut(s)	141, 153, 157, 235, 268, 442
MboII	GAAGA	6 cut(s)	94, 439, 456, 459, 493, 496
MflI	RGATCY	2 cut(s)	235, 442
MhlI	GDGCHC	2 cut(s)	70, 288
MluCI	AATT	3 cut(s)	209, 278, 516
MlyI	GAGTC	3 cut(s)	169, 309, 327
MnlI	CCTC	4 cut(s)	134, 329, 337, 562
MslI	CAYNNNNRTG	1 cut(s)	476
MspI	CCGG	4 cut(s)	98, 187, 231, 405
MspR9I	CCNGG	4 cut(s)	77, 98, 232, 406
MvaI	CCWGG	1 cut(s)	77
MwoI	GCNNNNNNNGC	3 cut(s)	23, 102, 425
NciI	CCSGG	3 cut(s)	98, 232, 406
NdeII	GATC	6 cut(s)	141, 153, 157, 235, 268, 442
NlaIII	CATG	3 cut(s)	175, 269, 481
NlaIV	GGNNCC	2 cut(s)	348, 549
NmuCI	GTSAC	1 cut(s)	355
PagI	TCATGA	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	217
PleI	GAGTC	3 cut(s)	169, 309, 327
PpsI	GAGTC	3 cut(s)	169, 309, 327
Psp6I	CCWGG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	75
PspN4I	GGNNCC	2 cut(s)	348, 549
PspPI	GGNCC	3 cut(s)	95, 108, 392
PsuI	RGATCY	2 cut(s)	235, 442
RsaI	GTAC	2 cut(s)	264, 549
RsaNI	GTAC	2 cut(s)	263, 548
RseI	CAYNNNNRTG	1 cut(s)	476
Sau3AI	GATC	6 cut(s)	141, 153, 157, 235, 268, 442
Sau96I	GGNCC	3 cut(s)	95, 108, 392
SchI	GAGTC	3 cut(s)	169, 309, 327
ScrFI	CCNGG	4 cut(s)	77, 98, 232, 406
SduI	GDGCHC	2 cut(s)	70, 288
SetI	ASST	7 cut(s)	78, 110, 153, 291, 304, 397, 573
SfaNI	GCATC	2 cut(s)	4, 14
SinI	GGWCC	2 cut(s)	108, 392
SmiMI	CAYNNNNRTG	1 cut(s)	476
Sse9I	AATT	3 cut(s)	209, 278, 516
SsiI	CCGC	3 cut(s)	90, 439, 545
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	4 cut(s)	75, 96, 230, 404
TaiI	ACGT	1 cut(s)	304
TaqI	TCGA	4 cut(s)	156, 282, 398, 502
TasI	AATT	3 cut(s)	209, 278, 516
TatI	WGTACW	1 cut(s)	262
TfiI	GAWTC	1 cut(s)	217
TscAI	CASTG	1 cut(s)	463
TseFI	GTSAC	1 cut(s)	355
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	2 cut(s)	160, 494
TspGWI	ACGGA	2 cut(s)	134, 297
TspRI	CASTG	1 cut(s)	463
VpaK11BI	GGWCC	2 cut(s)	108, 392
XapI	RAATTY	2 cut(s)	209, 278
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.