Rroxscaffold_2G00085990

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
8265238 .. 8267911
2674 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00085990.1

Sequence Viewer

Length: 1440 bp
ATGCTCTTTCTCCTTTCTTCTCTCTTCAGAGCATCAATGGCTGTGTTTGTGGTGGTACTACTCTGTGTGCTCTTTGTGCTCTGTTTCTGCTCTGCTCTGCTAAGATGGAATGAGGTGAGGTACAGGAAGAAGGGTCTTCCTCCAGGCACAATGGGCTGGCCAGTCTTTGGAGAAACCACAGAGTTCCTCAAGCAAGGCCCAAGCTTCATGAAAAACCAGAGAGCTAGGTATGGTAGTTTTTTCAAATCCCACATACTGGGGTGTCCTACCGTAGTTTCCATGGATCCAGAGGTGAACAGATACATCCTAATGAACGAAGCTAAAGGCCTCGTTCCCGGGTACCCTCAATCGATGTTGGATATCTTGGGCAAGTGTAACATTGCAGCTGTTCATGGCTCCACTCACAAGTACATGAGAGGGGCATTGCTTGCCCTCATTAGCTCAACCATGATCAGAGACCAGATTTTGCCCAAGATTGATGACTTCATGAGAGCCCACCTCAGTGGTTGGGGGAACCAAGTCATCAACATCCAAGAAAAGACCAAAGAGATGGCGCTTCTTTCGTCGCTTAAACAGATTGCAGGCATTGAATCAAGTTCGATTTCTCAGGCATTCAAGACCGAGTTCTTCAAGCTTGTGTTGGGAACTCTGTCATTGCCCATTGATCTTCCTGGCACAAATTATCGCCGCGGATTTCAGGCGAGGAAGAATATTGTTAGCATGTTGAAGCAACTAATAGAAGATAGAAGGGCTTCTTCAGAGGAAGTCCACCAAGACATGCTTGGTGGTTTGATGAGAAGTGATGATCAGAACAGATACAAACTCACCGATGAAGAAATAATCGATCACATCATCACGATTATGTATTCGGGCTATGAGACTGTTTCGACCACATCAATGATGGCGGTTAAGTACCTTCATGATCATCCACAAGCGCTTGAAGAACTCAGAAAAGAACATTTGGCAATCAGAGTCAGAAAAAGGCCCGAGGATCCCATTGATTGGAATGACCTGAAATCTATGCGGTTTACTCGTGCGGTGATATTTGAGACCTCAAGATTAGCTACTATTGTAAACGGGGTTTTGAGGAAAACCACTCAAGATATGGAACTAAATGGGTTTTTGATACCAAAAGGATGGAGAATCTATGTTTATACAAGAGAGACTAACTACGATTCGTTTACGTACCCTGATCCATTAACCTTCAATCCATGGAGATGGATGGATAAGAGCTTGGAGTCTAACAACTCCTTTATATTTGGGGGAGGTACTAGGCTGTGTCCAGGAAAGGAGTTGGGAATAGCAGAAATTTCCACATTCCTACACTACTTTGTAACTAGATACAGATGGGAAGAAGTTGGGGGAGATAAACTGATGAAGTTTCCAAGAGTTGAAGCGCCAAATGGACTGCACATTAGGGTTTCTAATCTGACTAACTAG

Protein Analysis

479

Amino Acids

54.88

Weight (kDa)

9.23

Isoelectric Point (pI)

41.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 47 - 461 3.7e-54 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 339
AccB1I GGYRCC 1 cut(s) 339
AccB7I CCANNNNNTGG 3 cut(s) 167, 256, 1002
AccII CGCG 1 cut(s) 690
AciI CCGC 5 cut(s) 688, 690, 905, 1024, 1037
AclWI GGATC 5 cut(s) 278, 291, 986, 999, 1187
AcoI YGGCCR 1 cut(s) 158
AcsI RAATTY 1 cut(s) 1308
AcuI CTGAAG 2 cut(s) 10, 741
AfaI GTAC 7 cut(s) 57, 122, 341, 410, 914, 1187, 1270
AfeI AGCGCT 1 cut(s) 936
AfiI CCNNNNNNNGG 3 cut(s) 167, 256, 1002
AgsI TTSAA 8 cut(s) 244, 590, 616, 631, 727, 941, 1207, 1394
AjnI CCWGG 3 cut(s) 142, 670, 1282
AleI CACNNNNGTG 1 cut(s) 501
AluBI AGCT 8 cut(s) 204, 224, 320, 386, 441, 634, 1064, 1233
AluI AGCT 8 cut(s) 204, 224, 320, 386, 441, 634, 1064, 1233
Alw21I GWGCWC 2 cut(s) 72, 81
Alw26I GTCTC 4 cut(s) 450, 872, 1043, 1157
AlwI GGATC 5 cut(s) 278, 291, 986, 999, 1187
Ama87I CYCGRG 2 cut(s) 335, 986
Aor51HI AGCGCT 1 cut(s) 936
AoxI GGCC 4 cut(s) 158, 196, 325, 983
ApeKI GCWGC 1 cut(s) 383
ApoI RAATTY 1 cut(s) 1308
Asp700I GAANNNNTTC 1 cut(s) 751
Asp718I GGTACC 1 cut(s) 339
AspLEI GCGC 3 cut(s) 556, 937, 1399
AspS9I GGNCC 2 cut(s) 197, 984
AsuC2I CCSGG 2 cut(s) 336, 337
AsuHPI GGTGA 4 cut(s) 127, 304, 817, 1051
AvaI CYCGRG 2 cut(s) 335, 986
BalI TGGCCA 1 cut(s) 160
BamHI GGATCC 2 cut(s) 283, 991
BanI GGYRCC 1 cut(s) 339
BanII GRGCYC 1 cut(s) 496
BauI CACGAG 1 cut(s) 1032
BbsI GAAGAC 1 cut(s) 128
Bbv12I GWGCWC 2 cut(s) 72, 81
BbvI GCAGC 1 cut(s) 395
BccI CCATC 7 cut(s) 99, 544, 895, 1131, 1212, 1216, 1341
BciT130I CCWGG 3 cut(s) 144, 672, 1284
BclI TGATCA 3 cut(s) 450, 805, 922
BcnI CCSGG 2 cut(s) 336, 337
BcoDI GTCTC 4 cut(s) 450, 872, 1043, 1157
BfaI CTAG 4 cut(s) 225, 1272, 1338, 1438
BfoI RGCGCY 3 cut(s) 557, 938, 1400
BisI GCNGC 2 cut(s) 384, 688
BlsI GCNGC 2 cut(s) 385, 689
Bme1390I CCNGG 5 cut(s) 144, 336, 337, 672, 1284
BmeT110I CYCGRG 2 cut(s) 335, 986
BmgT120I GGNCC 2 cut(s) 197, 984
BmiI GGNNCC 5 cut(s) 285, 341, 397, 515, 993
BmrFI CCNGG 5 cut(s) 144, 336, 337, 672, 1284
BmrI ACTGGG 1 cut(s) 266
BmsI GCATC 1 cut(s) 41
BmuI ACTGGG 1 cut(s) 266
BpiI GAAGAC 1 cut(s) 128
BplI GAGNNNNNCTC 2 cut(s) 483, 515
BpmI CTGGAG 1 cut(s) 126
BpuEI CTTGAG 3 cut(s) 173, 1039, 1083
BpuMI CCSGG 2 cut(s) 336, 337
Bsa29I ATCGAT 2 cut(s) 350, 843
BsaAI YACGTR 1 cut(s) 1185
BsaI GGTCTC 2 cut(s) 450, 1043
BsaJI CCNNGG 5 cut(s) 279, 335, 688, 987, 1211
Bsc4I CCNNNNNNNGG 3 cut(s) 167, 256, 1002
Bse1I ACTGG 2 cut(s) 161, 261
Bse3DI GCAATG 3 cut(s) 378, 422, 653
BseBI CCWGG 3 cut(s) 144, 672, 1284
BseCI ATCGAT 2 cut(s) 350, 843
BseDI CCNNGG 5 cut(s) 279, 335, 688, 987, 1211
BseGI GGATG 5 cut(s) 303, 528, 925, 1142, 1227
BseLI CCNNNNNNNGG 3 cut(s) 167, 256, 1002
BseMI GCAATG 3 cut(s) 378, 422, 653
BseMII CTCAG 3 cut(s) 514, 620, 961
BseNI ACTGG 2 cut(s) 161, 261
BseXI GCAGC 1 cut(s) 395
BsgI GTGCAG 1 cut(s) 1394
Bsh1236I CGCG 1 cut(s) 690
BshFI GGCC 4 cut(s) 160, 198, 327, 985
BshNI GGYRCC 1 cut(s) 339
BshVI ATCGAT 2 cut(s) 350, 843
BsiHKAI GWGCWC 2 cut(s) 72, 81
BsiHKCI CYCGRG 2 cut(s) 335, 986
BsiSI CCGG 1 cut(s) 336
BslI CCNNNNNNNGG 3 cut(s) 167, 256, 1002
BsmAI GTCTC 4 cut(s) 450, 872, 1043, 1157
BsmI GAATGC 1 cut(s) 611
BsnI GGCC 4 cut(s) 160, 198, 327, 985
Bso31I GGTCTC 2 cut(s) 450, 1043
BsoBI CYCGRG 2 cut(s) 335, 986
Bsp1286I GDGCHC 3 cut(s) 72, 81, 496
Bsp143I GATC 8 cut(s) 283, 450, 664, 805, 844, 922, 991, 1192
Bsp19I CCATGG 2 cut(s) 279, 1211
BspACI CCGC 5 cut(s) 688, 690, 905, 1024, 1037
BspANI GGCC 4 cut(s) 160, 198, 327, 985
BspCNI CTCAG 3 cut(s) 513, 619, 960
BspDI ATCGAT 2 cut(s) 350, 843
BspFNI CGCG 1 cut(s) 690
BspHI TCATGA 3 cut(s) 207, 486, 919
BspLI GGNNCC 5 cut(s) 285, 341, 397, 515, 993
BspPI GGATC 5 cut(s) 278, 291, 986, 999, 1187
BspT107I GGYRCC 1 cut(s) 339
BspTNI GGTCTC 2 cut(s) 450, 1043
BsrDI GCAATG 3 cut(s) 378, 422, 653
BsrI ACTGG 2 cut(s) 161, 261
BssECI CCNNGG 5 cut(s) 279, 335, 688, 987, 1211
BssMI GATC 8 cut(s) 283, 450, 664, 805, 844, 922, 991, 1192
BssSI CACGAG 1 cut(s) 1032
BssT1I CCWWGG 2 cut(s) 279, 1211
Bst2BI CACGAG 1 cut(s) 1032
Bst2UI CCWGG 3 cut(s) 144, 672, 1284
Bst4CI ACNGT 2 cut(s) 271, 883
Bst6I CTCTTC 1 cut(s) 29
BstAPI GCANNNNNTGC 1 cut(s) 428
BstBAI YACGTR 1 cut(s) 1185
BstC8I GCNNGC 3 cut(s) 158, 429, 583
BstDEI CTNAG 4 cut(s) 101, 500, 606, 947
BstDSI CCRYGG 3 cut(s) 279, 688, 1211
BstF5I GGATG 5 cut(s) 303, 528, 925, 1142, 1227
BstFNI CGCG 1 cut(s) 690
BstH2I RGCGCY 3 cut(s) 557, 938, 1400
BstHHI GCGC 3 cut(s) 556, 937, 1399
BstKTI GATC 8 cut(s) 286, 453, 667, 808, 847, 925, 994, 1195
BstMAI GTCTC 4 cut(s) 450, 872, 1043, 1157
BstMBI GATC 8 cut(s) 283, 450, 664, 805, 844, 922, 991, 1192
BstMWI GCNNNNNNNGC 4 cut(s) 38, 76, 153, 428
BstNI CCWGG 3 cut(s) 144, 672, 1284
BstNSI RCATGY 2 cut(s) 724, 781
BstSCI CCNGG 5 cut(s) 142, 334, 335, 670, 1282
BstSNI TACGTA 1 cut(s) 1185
BstUI CGCG 1 cut(s) 690
BstV1I GCAGC 1 cut(s) 395
BstV2I GAAGAC 1 cut(s) 128
BstX2I RGATCY 2 cut(s) 283, 991
BstXI CCANNNNNNTGG 4 cut(s) 503, 550, 1137, 1218
BstYI RGATCY 2 cut(s) 283, 991
Bsu15I ATCGAT 2 cut(s) 350, 843
BsuRI GGCC 4 cut(s) 160, 198, 327, 985
BsuTUI ATCGAT 2 cut(s) 350, 843
BtgI CCRYGG 3 cut(s) 279, 688, 1211
BtsCI GGATG 5 cut(s) 303, 528, 925, 1142, 1227
BtsIMutI CAGTG 1 cut(s) 508
Cac8I GCNNGC 3 cut(s) 158, 429, 583
CciI TCATGA 3 cut(s) 207, 486, 919
CfoI GCGC 3 cut(s) 556, 937, 1399
Cfr13I GGNCC 2 cut(s) 197, 984
Cfr42I CCGCGG 1 cut(s) 691
Cfr9I CCCGGG 1 cut(s) 335
ClaI ATCGAT 2 cut(s) 350, 843
Csp6I GTAC 7 cut(s) 56, 121, 340, 409, 913, 1186, 1269
CviQI GTAC 7 cut(s) 56, 121, 340, 409, 913, 1186, 1269
DdeI CTNAG 4 cut(s) 101, 500, 606, 947
DpnI GATC 8 cut(s) 285, 452, 666, 807, 846, 924, 993, 1194
DpnII GATC 8 cut(s) 283, 450, 664, 805, 844, 922, 991, 1192
EaeI YGGCCR 1 cut(s) 158
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
Eco105I TACGTA 1 cut(s) 1185
Eco130I CCWWGG 2 cut(s) 279, 1211
Eco147I AGGCCT 1 cut(s) 327
Eco24I GRGCYC 1 cut(s) 496
Eco31I GGTCTC 2 cut(s) 450, 1043
Eco32I GATATC 1 cut(s) 361
Eco47III AGCGCT 1 cut(s) 936
Eco57I CTGAAG 2 cut(s) 10, 741
Eco88I CYCGRG 2 cut(s) 335, 986
EcoRII CCWGG 3 cut(s) 142, 670, 1282
EcoRV GATATC 1 cut(s) 361
EcoT14I CCWWGG 2 cut(s) 279, 1211
EcoT38I GRGCYC 1 cut(s) 496
ErhI CCWWGG 2 cut(s) 279, 1211
FalI AAGNNNNNCTT 4 cut(s) 739, 771, 765, 797
FbaI TGATCA 3 cut(s) 450, 805, 922
Fnu4HI GCNGC 2 cut(s) 384, 688
FokI GGATG 5 cut(s) 290, 515, 912, 1149, 1234
FriOI GRGCYC 1 cut(s) 496
Fsp4HI GCNGC 2 cut(s) 384, 688
FspBI CTAG 4 cut(s) 225, 1272, 1338, 1438
GlaI GCGC 3 cut(s) 555, 936, 1398
GluI GCNGC 2 cut(s) 384, 688
GsuI CTGGAG 1 cut(s) 126
HaeII RGCGCY 3 cut(s) 557, 938, 1400
HaeIII GGCC 4 cut(s) 160, 198, 327, 985
HapII CCGG 1 cut(s) 336
HhaI GCGC 3 cut(s) 556, 937, 1399
Hin6I GCGC 3 cut(s) 554, 935, 1397
HinP1I GCGC 3 cut(s) 554, 935, 1397
HindIII AAGCTT 2 cut(s) 202, 632
HinfI GANTC 5 cut(s) 590, 972, 1143, 1175, 1238
HpaII CCGG 1 cut(s) 336
HphI GGTGA 4 cut(s) 127, 304, 817, 1051
Hpy166II GTNNAC 5 cut(s) 295, 769, 1029, 1075, 1182
Hpy188I TCNGA 8 cut(s) 29, 455, 760, 810, 950, 971, 977, 1431
Hpy188III TCNNGA 8 cut(s) 208, 287, 487, 616, 856, 920, 1056, 1100
Hpy8I GTNNAC 5 cut(s) 295, 769, 1029, 1075, 1182
Hpy99I CGWCG 1 cut(s) 568
HpyAV CCTTC 4 cut(s) 124, 741, 926, 1213
HpyCH4III ACNGT 2 cut(s) 271, 883
HpyCH4IV ACGT 1 cut(s) 1184
HpyCH4V TGCA 3 cut(s) 383, 581, 1411
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 76, 153, 428
HpyF3I CTNAG 4 cut(s) 101, 500, 606, 947
HpySE526I ACGT 1 cut(s) 1184
HspAI GCGC 3 cut(s) 554, 935, 1397
KpnI GGTACC 1 cut(s) 343
Ksp22I TGATCA 3 cut(s) 450, 805, 922
KspI CCGCGG 1 cut(s) 691
Kzo9I GATC 8 cut(s) 283, 450, 664, 805, 844, 922, 991, 1192
LmnI GCTCC 1 cut(s) 401
Lsp1109I GCAGC 1 cut(s) 395
LweI GCATC 1 cut(s) 41
MaeI CTAG 4 cut(s) 225, 1272, 1338, 1438
MaeII ACGT 1 cut(s) 1184
MaeIII GTNAC 2 cut(s) 374, 1333
MalI GATC 8 cut(s) 285, 452, 666, 807, 846, 924, 993, 1194
MboI GATC 8 cut(s) 283, 450, 664, 805, 844, 922, 991, 1192
MflI RGATCY 2 cut(s) 283, 991
MhlI GDGCHC 3 cut(s) 72, 81, 496
MlsI TGGCCA 1 cut(s) 160
MluCI AATT 2 cut(s) 679, 1308
MluNI TGGCCA 1 cut(s) 160
MlyI GAGTC 2 cut(s) 981, 1247
MmeI TCCRAC 1 cut(s) 336
Mox20I TGGCCA 1 cut(s) 160
MroXI GAANNNNTTC 1 cut(s) 751
MscI TGGCCA 1 cut(s) 160
MseI TTAA 3 cut(s) 570, 909, 1199
MslI CAYNNNNRTG 5 cut(s) 308, 501, 860, 896, 1216
Msp20I TGGCCA 1 cut(s) 160
MspA1I CMGCKG 2 cut(s) 386, 690
MspI CCGG 1 cut(s) 336
MspR9I CCNGG 5 cut(s) 144, 336, 337, 672, 1284
Mva1269I GAATGC 1 cut(s) 611
MvaI CCWGG 3 cut(s) 144, 672, 1284
MvnI CGCG 1 cut(s) 690
MwoI GCNNNNNNNGC 4 cut(s) 38, 76, 153, 428
NciI CCSGG 2 cut(s) 336, 337
NcoI CCATGG 2 cut(s) 279, 1211
NdeII GATC 8 cut(s) 283, 450, 664, 805, 844, 922, 991, 1192
NlaIV GGNNCC 5 cut(s) 285, 341, 397, 515, 993
NspI RCATGY 2 cut(s) 724, 781
OliI CACNNNNGTG 1 cut(s) 501
PagI TCATGA 3 cut(s) 207, 486, 919
PceI AGGCCT 1 cut(s) 327
PctI GAATGC 1 cut(s) 611
PdmI GAANNNNTTC 1 cut(s) 751
PfeI GAWTC 3 cut(s) 590, 1143, 1175
PflMI CCANNNNNTGG 3 cut(s) 167, 256, 1002
PfoI TCCNGGA 1 cut(s) 1282
PkrI GCNGC 2 cut(s) 385, 689
PleI GAGTC 2 cut(s) 980, 1246
PpsI GAGTC 2 cut(s) 980, 1246
Ppu21I YACGTR 1 cut(s) 1185
Psp6I CCWGG 3 cut(s) 142, 670, 1282
PspGI CCWGG 3 cut(s) 142, 670, 1282
PspN4I GGNNCC 5 cut(s) 285, 341, 397, 515, 993
PspPI GGNCC 2 cut(s) 197, 984
PsuI RGATCY 2 cut(s) 283, 991
PvuII CAGCTG 1 cut(s) 386
RsaI GTAC 7 cut(s) 57, 122, 341, 410, 914, 1187, 1270
RsaNI GTAC 7 cut(s) 56, 121, 340, 409, 913, 1186, 1269
RseI CAYNNNNRTG 5 cut(s) 308, 501, 860, 896, 1216
SacII CCGCGG 1 cut(s) 691
SaqAI TTAA 3 cut(s) 570, 909, 1199
SatI GCNGC 2 cut(s) 384, 688
Sau3AI GATC 8 cut(s) 283, 450, 664, 805, 844, 922, 991, 1192
Sau96I GGNCC 2 cut(s) 197, 984
SchI GAGTC 2 cut(s) 981, 1247
ScrFI CCNGG 5 cut(s) 144, 336, 337, 672, 1284
SduI GDGCHC 3 cut(s) 72, 81, 496
SfaNI GCATC 1 cut(s) 41
Sfr303I CCGCGG 1 cut(s) 691
SgrBI CCGCGG 1 cut(s) 691
SmaI CCCGGG 1 cut(s) 337
SmiMI CAYNNNNRTG 5 cut(s) 308, 501, 860, 896, 1216
SmlI CTYRAG 3 cut(s) 188, 1054, 1098
SmoI CTYRAG 3 cut(s) 188, 1054, 1098
SnaBI TACGTA 1 cut(s) 1185
Sse9I AATT 2 cut(s) 679, 1308
SseBI AGGCCT 1 cut(s) 327
SsiI CCGC 5 cut(s) 688, 690, 905, 1024, 1037
SspI AATATT 1 cut(s) 712
SspMI CTAG 4 cut(s) 225, 1272, 1338, 1438
StuI AGGCCT 1 cut(s) 327
StyD4I CCNGG 5 cut(s) 142, 334, 335, 670, 1282
StyI CCWWGG 2 cut(s) 279, 1211
TaaI ACNGT 2 cut(s) 271, 883
TaiI ACGT 1 cut(s) 1187
TaqI TCGA 4 cut(s) 350, 599, 843, 887
TaqII GACCGA 1 cut(s) 635
TasI AATT 2 cut(s) 679, 1308
TatI WGTACW 1 cut(s) 408
TauI GCSGC 1 cut(s) 690
TfiI GAWTC 3 cut(s) 590, 1143, 1175
Tru1I TTAA 3 cut(s) 570, 909, 1199
Tru9I TTAA 3 cut(s) 570, 909, 1199
TscAI CASTG 1 cut(s) 508
TseI GCWGC 1 cut(s) 383
TspDTI ATGAA 8 cut(s) 196, 224, 326, 380, 475, 846, 908, 1391
TspMI CCCGGG 1 cut(s) 335
TspRI CASTG 1 cut(s) 508
Van91I CCANNNNNTGG 3 cut(s) 167, 256, 1002
XapI RAATTY 1 cut(s) 1308
XceI RCATGY 2 cut(s) 724, 781
XcmI CCANNNNNNNNNTGG 3 cut(s) 779, 898, 1102
XmaI CCCGGG 1 cut(s) 335
XmnI GAANNNNTTC 1 cut(s) 751
XspI CTAG 4 cut(s) 225, 1272, 1338, 1438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.