Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007749

Physical Location & Seq

Genomic Coordinates Reverse (-)

23991115 .. 23994878

Gene Structure 3764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G250000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGCTGTGTTCATGGTGATACTTTGTGTTCTCTTTGTCCTCTGTATCTGCTCTGCTTTGCTGAGATGGAATGAAGTGAGGTACAGGAAGAAAGGCCTCCCTCCAGGCACAATGGGTTGGCCAGTTTTTGGGGAGACTACTGAGTTTCTCAAACAAGGCCCCAACTTCATGAAAAACCAGAGAGCAAGGTATGGTAGTTTTTTCAAATCCCACATACTGGGGTGCCCTACAGTTGTTTCCATGGATCCAGAGCTCAACAGATACATCCTAATGAATGAAGCCAAAGGGCTTGTTCCTGGCTATCCTCAGTCCATGTTGGATATATTGGGAAAATGTAACATTGCAGCAGTTCATGGCTCCACTCACAAGATGGCACTTCTCTCATCACTTAAGCAGATTGCAGGCATTGAGTCAAGCTCAATTTCCTGCAAGCCATTCAAGACTGAGTTCTTCAAGCTTGTTTTAGGCACCCTTTCATTACCTATTGACCTTCCTGGCACAAATTACCGCCGTGGATTCCAGGGAAGGAAGAACATCATATGCATGCTGGAACAGCTCATAGAGGAGAGAAGGGCTTCCCAAGAAGTCCATCAAGACATGCTTGGTTGCTTACTGAGTGATGAAAACAGATACAAACTCAGTGATGAAGAAATAATTGATCACATAATCACGATCTTATATTCGGGTTATGAGACCGTTTCGACTACTTCAATGATGGCTGTGAAGTACCTCCATGATCATCCCAAAGCGCTTGAAGAACTCAGAAAAGAACATTTGGCAATCAGAGAAAAGAAAAGGCCAGAGGATCCAATTGACTGGAATGACTTGAAATCCATGCGGTTTACTCGTGCGGTGATATTTGAGACCTCAAGATTAGCTACCATTGTCAATGGGGTGCTGAGGAAAACCACTCAAGATATGGAGCTAAATGGTTATCTGATTCCAAAGGGGTGGAGAATTTATGTTTACACCAGAGAGATTAATTATGACTCCTTTCTGTATCCTGATCCATTAACCTTCAATCCATGGAGATGGCTGGACAAGAGCTTGGAATCTCACAACTACTGCCTTATATTTGGAGGGGGCACAAGGCAGTGTCCAGGAAAGGAACTTGGAATTGCAGAGATTTCAACTTTCCTGCACTACTTCGTAACTAGATACAGGTGGGAAGAAGTTGGGGGAGACAAACTGACGAAATTTCCAAGAGTAGAGGCACCAAATGGACTGCACCTTAGGGTGTCTCATCTTGCTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0003674 GO:0003824 GO:0004497 GO:0006091 GO:0006629 GO:0006694 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009647 GO:0009791 GO:0009987 GO:0010268 GO:0010817 GO:0016043 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0022900 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044237 GO:0044238 GO:0048856 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

419

Amino Acids

48.03

Weight (kDa)

8.85

Isoelectric Point (pI)

45.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30180 AT5G38970 AT5G38970 AT5G38970 AT5G38970
fragaria_vesca	FvH4_6g46500 FvH4_6g46500 FvH4_6g46500
malus_domestica	MD09G1073300.v1.1 MD17G1064800.v1.1
prunus_persica	Prupe.3G250000_v2.0.a1 Prupe.3G250000_v2.0.a1
pyrus_communis	pycom09g00070 pycom17g06480
rosa_chinensis	RchiOBHm_Chr2g0165151
rosa_laevigata	RLG00000021512
rosa_roxburghii	Rroxscaffold_2G00085990
rosa_rugosa	Rorug02G0512600 Rorug02G0512700
rosa_samantha	Rh2AG580900 Rh2BG592200 Rh2CG562900 Rh2DG602200
rosa_wichuraiana	Rw2G048240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	222, 467, 1213
AccB7I	CCANNNNNTGG	2 cut(s)	128, 217
AciI	CCGC	3 cut(s)	508, 838, 851
AclWI	GGATC	5 cut(s)	239, 252, 800, 813, 1001
AcoI	YGGCCR	1 cut(s)	119
AcsI	RAATTY	2 cut(s)	957, 1196
AfaI	GTAC	2 cut(s)	83, 728
AfeI	AGCGCT	1 cut(s)	750
AfiI	CCNNNNNNNGG	2 cut(s)	128, 217
AflII	CTTAAG	1 cut(s)	389
AgsI	TTSAA	8 cut(s)	205, 439, 454, 711, 755, 829, 1021, 1131
AjnI	CCWGG	5 cut(s)	103, 295, 493, 519, 1099
AluBI	AGCT	7 cut(s)	253, 417, 457, 556, 878, 925, 1047
AluI	AGCT	7 cut(s)	253, 417, 457, 556, 878, 925, 1047
Alw21I	GWGCWC	1 cut(s)	255
Alw26I	GTCTC	5 cut(s)	128, 686, 857, 1176, 1245
AlwI	GGATC	5 cut(s)	239, 252, 800, 813, 1001
Aor51HI	AGCGCT	1 cut(s)	750
AoxI	GGCC	4 cut(s)	94, 119, 157, 797
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	2 cut(s)	957, 1196
AseI	ATTAAT	1 cut(s)	981
Asp700I	GAANNNNTTC	1 cut(s)	574
AspLEI	GCGC	1 cut(s)	751
AspS9I	GGNCC	1 cut(s)	158
AsuHPI	GGTGA	2 cut(s)	28, 865
AxyI	CCTNAGG	1 cut(s)	1232
BaeGI	GKGCMC	2 cut(s)	227, 1088
BalI	TGGCCA	1 cut(s)	121
BamHI	GGATCC	2 cut(s)	244, 805
BanI	GGYRCC	3 cut(s)	222, 467, 1213
BanII	GRGCYC	1 cut(s)	255
BauI	CACGAG	1 cut(s)	846
Bbv12I	GWGCWC	1 cut(s)	255
BbvCI	CCTCAGC	1 cut(s)	899
BbvI	GCAGC	1 cut(s)	356
BccI	CCATC	5 cut(s)	60, 364, 597, 709, 1026
BceAI	ACGGC	1 cut(s)	495
BciT130I	CCWGG	5 cut(s)	105, 297, 495, 521, 1101
BciVI	GTATCC	1 cut(s)	1011
BclI	TGATCA	2 cut(s)	658, 736
BcoDI	GTCTC	5 cut(s)	128, 686, 857, 1176, 1245
BfaI	CTAG	1 cut(s)	1155
BfmI	CTRYAG	1 cut(s)	228
BfoI	RGCGCY	1 cut(s)	752
BfrI	CTTAAG	1 cut(s)	389
BfuI	GTATCC	1 cut(s)	1011
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
Bme1390I	CCNGG	5 cut(s)	105, 297, 495, 521, 1101
BmgT120I	GGNCC	1 cut(s)	158
BmiI	GGNNCC	7 cut(s)	160, 224, 246, 358, 469, 807, 1215
BmrFI	CCNGG	5 cut(s)	105, 297, 495, 521, 1101
BmrI	ACTGGG	1 cut(s)	227
BmuI	ACTGGG	1 cut(s)	227
BplI	GAGNNNNNCTC	2 cut(s)	401, 433
BpmI	CTGGAG	1 cut(s)	87
Bpu10I	CCTNAGC	1 cut(s)	899
BpuEI	CTTGAG	2 cut(s)	853, 897
BsaI	GGTCTC	2 cut(s)	686, 857
BsaJI	CCNNGG	4 cut(s)	240, 511, 520, 1025
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 217
Bse1I	ACTGG	3 cut(s)	122, 222, 821
Bse21I	CCTNAGG	1 cut(s)	1232
Bse3DI	GCAATG	1 cut(s)	339
BseBI	CCWGG	5 cut(s)	105, 297, 495, 521, 1101
BseDI	CCNNGG	4 cut(s)	240, 511, 520, 1025
BseGI	GGATG	2 cut(s)	264, 739
BseLI	CCNNNNNNNGG	2 cut(s)	128, 217
BseMI	GCAATG	1 cut(s)	339
BseMII	CTCAG	8 cut(s)	53, 132, 320, 435, 605, 652, 775, 890
BseNI	ACTGG	3 cut(s)	122, 222, 821
BseRI	GAGGAG	1 cut(s)	578
BseSI	GKGCMC	2 cut(s)	227, 1088
BseXI	GCAGC	1 cut(s)	356
BsgI	GTGCAG	2 cut(s)	1124, 1211
BshFI	GGCC	4 cut(s)	96, 121, 159, 799
BshNI	GGYRCC	3 cut(s)	222, 467, 1213
BsiHKAI	GWGCWC	1 cut(s)	255
BslI	CCNNNNNNNGG	2 cut(s)	128, 217
BsmAI	GTCTC	5 cut(s)	128, 686, 857, 1176, 1245
BsnI	GGCC	4 cut(s)	96, 121, 159, 799
Bso31I	GGTCTC	2 cut(s)	686, 857
Bsp1286I	GDGCHC	3 cut(s)	227, 255, 1088
Bsp143I	GATC	6 cut(s)	244, 658, 672, 736, 805, 1006
Bsp19I	CCATGG	2 cut(s)	240, 1025
BspACI	CCGC	3 cut(s)	508, 838, 851
BspANI	GGCC	4 cut(s)	96, 121, 159, 799
BspCNI	CTCAG	8 cut(s)	54, 133, 319, 436, 606, 651, 774, 891
BspHI	TCATGA	1 cut(s)	168
BspLI	GGNNCC	7 cut(s)	160, 224, 246, 358, 469, 807, 1215
BspPI	GGATC	5 cut(s)	239, 252, 800, 813, 1001
BspT107I	GGYRCC	3 cut(s)	222, 467, 1213
BspTI	CTTAAG	1 cut(s)	389
BspTNI	GGTCTC	2 cut(s)	686, 857
BsrDI	GCAATG	1 cut(s)	339
BsrI	ACTGG	3 cut(s)	122, 222, 821
BssECI	CCNNGG	4 cut(s)	240, 511, 520, 1025
BssMI	GATC	6 cut(s)	244, 658, 672, 736, 805, 1006
BssSI	CACGAG	1 cut(s)	846
BssT1I	CCWWGG	2 cut(s)	240, 1025
Bst2BI	CACGAG	1 cut(s)	846
Bst2UI	CCWGG	5 cut(s)	105, 297, 495, 521, 1101
Bst4CI	ACNGT	2 cut(s)	232, 697
BstAFI	CTTAAG	1 cut(s)	389
BstC8I	GCNNGC	3 cut(s)	403, 431, 545
BstDEI	CTNAG	9 cut(s)	62, 141, 306, 444, 614, 638, 761, 899, 1232
BstDSI	CCRYGG	3 cut(s)	240, 511, 1025
BstF5I	GGATG	2 cut(s)	264, 739
BstH2I	RGCGCY	1 cut(s)	752
BstHHI	GCGC	1 cut(s)	751
BstKTI	GATC	6 cut(s)	247, 661, 675, 739, 808, 1009
BstMAI	GTCTC	5 cut(s)	128, 686, 857, 1176, 1245
BstMBI	GATC	6 cut(s)	244, 658, 672, 736, 805, 1006
BstMWI	GCNNNNNNNGC	1 cut(s)	553
BstNI	CCWGG	5 cut(s)	105, 297, 495, 521, 1101
BstNSI	RCATGY	2 cut(s)	547, 601
BstSCI	CCNGG	5 cut(s)	103, 295, 493, 519, 1099
BstSFI	CTRYAG	1 cut(s)	228
BstSLI	GKGCMC	2 cut(s)	227, 1088
BstV1I	GCAGC	1 cut(s)	356
BstX2I	RGATCY	2 cut(s)	244, 805
BstXI	CCANNNNNNTGG	3 cut(s)	816, 951, 1032
BstYI	RGATCY	2 cut(s)	244, 805
Bsu36I	CCTNAGG	1 cut(s)	1232
BsuI	GTATCC	1 cut(s)	1011
BsuRI	GGCC	4 cut(s)	96, 121, 159, 799
BtgI	CCRYGG	3 cut(s)	240, 511, 1025
BtsCI	GGATG	2 cut(s)	264, 739
BtsI	GCAGTG	1 cut(s)	1100
BtsIMutI	CAGTG	2 cut(s)	646, 1100
Cac8I	GCNNGC	3 cut(s)	403, 431, 545
CciI	TCATGA	1 cut(s)	168
CfoI	GCGC	1 cut(s)	751
Cfr13I	GGNCC	1 cut(s)	158
Csp6I	GTAC	2 cut(s)	82, 727
CviQI	GTAC	2 cut(s)	82, 727
DdeI	CTNAG	9 cut(s)	62, 141, 306, 444, 614, 638, 761, 899, 1232
DpnI	GATC	6 cut(s)	246, 660, 674, 738, 807, 1008
DpnII	GATC	6 cut(s)	244, 658, 672, 736, 805, 1006
EaeI	YGGCCR	1 cut(s)	119
Ecl136II	GAGCTC	1 cut(s)	253
Eco130I	CCWWGG	2 cut(s)	240, 1025
Eco147I	AGGCCT	1 cut(s)	96
Eco24I	GRGCYC	1 cut(s)	255
Eco31I	GGTCTC	2 cut(s)	686, 857
Eco47III	AGCGCT	1 cut(s)	750
Eco53kI	GAGCTC	1 cut(s)	253
Eco81I	CCTNAGG	1 cut(s)	1232
EcoICRI	GAGCTC	1 cut(s)	253
EcoO109I	RGGNCCY	1 cut(s)	158
EcoRII	CCWGG	5 cut(s)	103, 295, 493, 519, 1099
EcoT14I	CCWWGG	2 cut(s)	240, 1025
EcoT22I	ATGCAT	1 cut(s)	545
EcoT38I	GRGCYC	1 cut(s)	255
ErhI	CCWWGG	2 cut(s)	240, 1025
FalI	AAGNNNNNCTT	2 cut(s)	585, 617
FauNDI	CATATG	1 cut(s)	539
FbaI	TGATCA	2 cut(s)	658, 736
Fnu4HI	GCNGC	1 cut(s)	345
FokI	GGATG	2 cut(s)	251, 726
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	1 cut(s)	345
FspBI	CTAG	1 cut(s)	1155
GlaI	GCGC	1 cut(s)	750
GluI	GCNGC	1 cut(s)	345
GsuI	CTGGAG	1 cut(s)	87
HaeII	RGCGCY	1 cut(s)	752
HaeIII	GGCC	4 cut(s)	96, 121, 159, 799
HhaI	GCGC	1 cut(s)	751
Hin6I	GCGC	1 cut(s)	749
HinP1I	GCGC	1 cut(s)	749
HindIII	AAGCTT	1 cut(s)	455
HinfI	GANTC	5 cut(s)	410, 516, 940, 989, 1052
HphI	GGTGA	2 cut(s)	28, 865
Hpy166II	GTNNAC	2 cut(s)	843, 967
Hpy188I	TCNGA	3 cut(s)	764, 785, 939
Hpy188III	TCNNGA	8 cut(s)	169, 248, 439, 593, 670, 870, 914, 1004
Hpy8I	GTNNAC	2 cut(s)	843, 967
HpyAV	CCTTC	4 cut(s)	500, 519, 564, 1027
HpyCH4III	ACNGT	2 cut(s)	232, 697
HpyCH4V	TGCA	7 cut(s)	344, 401, 429, 543, 1121, 1141, 1228
HpyF10VI	GCNNNNNNNGC	1 cut(s)	553
HpyF3I	CTNAG	9 cut(s)	62, 141, 306, 444, 614, 638, 761, 899, 1232
HspAI	GCGC	1 cut(s)	749
Ksp22I	TGATCA	2 cut(s)	658, 736
Kzo9I	GATC	6 cut(s)	244, 658, 672, 736, 805, 1006
LmnI	GCTCC	2 cut(s)	362, 922
Lsp1109I	GCAGC	1 cut(s)	356
MaeI	CTAG	1 cut(s)	1155
MaeIII	GTNAC	2 cut(s)	335, 1150
MalI	GATC	6 cut(s)	246, 660, 674, 738, 807, 1008
MboI	GATC	6 cut(s)	244, 658, 672, 736, 805, 1006
MboII	GAAGA	6 cut(s)	100, 442, 541, 659, 767, 1181
MfeI	CAATTG	1 cut(s)	810
MflI	RGATCY	2 cut(s)	244, 805
MhlI	GDGCHC	3 cut(s)	227, 255, 1088
MlsI	TGGCCA	1 cut(s)	121
MluCI	AATT	8 cut(s)	420, 502, 654, 810, 957, 982, 1116, 1196
MluNI	TGGCCA	1 cut(s)	121
MlyI	GAGTC	2 cut(s)	419, 983
MmeI	TCCRAC	1 cut(s)	297
Mox20I	TGGCCA	1 cut(s)	121
Mph1103I	ATGCAT	1 cut(s)	545
MroXI	GAANNNNTTC	1 cut(s)	574
MscI	TGGCCA	1 cut(s)	121
MseI	TTAA	3 cut(s)	390, 981, 1013
MslI	CAYNNNNRTG	3 cut(s)	269, 542, 1030
Msp20I	TGGCCA	1 cut(s)	121
MspCI	CTTAAG	1 cut(s)	389
MspR9I	CCNGG	5 cut(s)	105, 297, 495, 521, 1101
MunI	CAATTG	1 cut(s)	810
MvaI	CCWGG	5 cut(s)	105, 297, 495, 521, 1101
MwoI	GCNNNNNNNGC	1 cut(s)	553
NcoI	CCATGG	2 cut(s)	240, 1025
NdeI	CATATG	1 cut(s)	539
NdeII	GATC	6 cut(s)	244, 658, 672, 736, 805, 1006
NlaIV	GGNNCC	7 cut(s)	160, 224, 246, 358, 469, 807, 1215
NsiI	ATGCAT	1 cut(s)	545
NspI	RCATGY	2 cut(s)	547, 601
PaeI	GCATGC	1 cut(s)	547
PagI	TCATGA	1 cut(s)	168
PceI	AGGCCT	1 cut(s)	96
PdmI	GAANNNNTTC	1 cut(s)	574
PfeI	GAWTC	3 cut(s)	516, 940, 1052
PflMI	CCANNNNNTGG	2 cut(s)	128, 217
PfoI	TCCNGGA	1 cut(s)	1099
PkrI	GCNGC	1 cut(s)	346
PleI	GAGTC	2 cut(s)	418, 983
PpsI	GAGTC	2 cut(s)	418, 983
PshBI	ATTAAT	1 cut(s)	981
Psp124BI	GAGCTC	1 cut(s)	255
Psp6I	CCWGG	5 cut(s)	103, 295, 493, 519, 1099
PspGI	CCWGG	5 cut(s)	103, 295, 493, 519, 1099
PspN4I	GGNNCC	7 cut(s)	160, 224, 246, 358, 469, 807, 1215
PspPI	GGNCC	1 cut(s)	158
PsuI	RGATCY	2 cut(s)	244, 805
RsaI	GTAC	2 cut(s)	83, 728
RsaNI	GTAC	2 cut(s)	82, 727
RseI	CAYNNNNRTG	3 cut(s)	269, 542, 1030
SacI	GAGCTC	1 cut(s)	255
SaqAI	TTAA	3 cut(s)	390, 981, 1013
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	6 cut(s)	244, 658, 672, 736, 805, 1006
Sau96I	GGNCC	1 cut(s)	158
SchI	GAGTC	2 cut(s)	419, 983
ScrFI	CCNGG	5 cut(s)	105, 297, 495, 521, 1101
SduI	GDGCHC	3 cut(s)	227, 255, 1088
SfcI	CTRYAG	1 cut(s)	228
SmiMI	CAYNNNNRTG	3 cut(s)	269, 542, 1030
SmlI	CTYRAG	3 cut(s)	389, 868, 912
SmoI	CTYRAG	3 cut(s)	389, 868, 912
SphI	GCATGC	1 cut(s)	547
Sse9I	AATT	8 cut(s)	420, 502, 654, 810, 957, 982, 1116, 1196
SseBI	AGGCCT	1 cut(s)	96
SsiI	CCGC	3 cut(s)	508, 838, 851
SspMI	CTAG	1 cut(s)	1155
SstI	GAGCTC	1 cut(s)	255
StuI	AGGCCT	1 cut(s)	96
StyD4I	CCNGG	5 cut(s)	103, 295, 493, 519, 1099
StyI	CCWWGG	2 cut(s)	240, 1025
TaaI	ACNGT	2 cut(s)	232, 697
TaqI	TCGA	1 cut(s)	701
TasI	AATT	8 cut(s)	420, 502, 654, 810, 957, 982, 1116, 1196
TfiI	GAWTC	3 cut(s)	516, 940, 1052
Tru1I	TTAA	3 cut(s)	390, 981, 1013
Tru9I	TTAA	3 cut(s)	390, 981, 1013
TscAI	CASTG	2 cut(s)	646, 1100
TseI	GCWGC	1 cut(s)	344
TspDTI	ATGAA	9 cut(s)	87, 157, 185, 287, 291, 341, 465, 636, 660
TspRI	CASTG	2 cut(s)	646, 1100
Van91I	CCANNNNNTGG	2 cut(s)	128, 217
Vha464I	CTTAAG	1 cut(s)	389
VspI	ATTAAT	1 cut(s)	981
XapI	RAATTY	2 cut(s)	957, 1196
XceI	RCATGY	2 cut(s)	547, 601
XcmI	CCANNNNNNNNNTGG	2 cut(s)	367, 916
XmnI	GAANNNNTTC	1 cut(s)	574
XspI	CTAG	1 cut(s)	1155
Zsp2I	ATGCAT	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.