Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0008321

Physical Location & Seq

Genomic Coordinates Reverse (-)

5522825 .. 5523160

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1078800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGAGTCCTGCAACCACAAGCGCCATATCAGCAACCACCAAAGTCCACAACCTATGGAGGTCCCCGCTGCCGTACCTCTTCGGCAGCTTAGGTTTAATGCTGCTACTCATTTCTGTTGCATTGGTCATCCTCGCGTGTTCATACCGCAAACCCTCTTCGGGTGAAGATGATGAAGAGAAGCCAGCAAAGCCCATGAGCGCAGTTCTTGACGATGAGAGAAGGATTGCAATTGTCATAATGGCCGGCGATGACAAGCCGACGCATTTAGCTACAGAGGTGATCACTCCAACAACTCACCACTGTACTTGCTCCTCTGAGACCGATCAGAAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0032879 GO:0032890 GO:0034762 GO:0034765 GO:0043269 GO:0044070 GO:0050789 GO:0051049 GO:0051952 GO:0051955 GO:0065007 GO:0080143 GO:1903789 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

112

Amino Acids

11.99

Weight (kDa)

5.72

Isoelectric Point (pI)

58.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30725
fragaria_vesca	FvH4_6g45940
malus_domestica	MD09G1078800.v1.1 MD17G1069100.v1.1
prunus_persica	Prupe.3G245400_v2.0.a1
pyrus_communis	pycom09g00560
rosa_chinensis	RchiOBHm_Chr2g0164151 RchiOBHm_Chr2g0164161
rosa_laevigata	RLG00000021439 RLG00000021440
rosa_multiflora	Rmu_sc0001427.1_g000018 Rmu_sc0001427.1_g000019
rosa_roxburghii	Rroxscaffold_2G00086750
rosa_rugosa	Rorug02G0506700 Rorug02G0506700
rosa_samantha	Rh2AG575000 Rh2AG575100 Rh2BG585600 Rh2BG585700 Rh2CG556400 Rh2CG556500 Rh2DG595200
rosa_wichuraiana	Rw2G047590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	134
AciI	CCGC	2 cut(s)	65, 145
AcoI	YGGCCR	1 cut(s)	240
AfaI	GTAC	2 cut(s)	74, 304
AfiI	CCNNNNNNNGG	1 cut(s)	158
AluBI	AGCT	2 cut(s)	87, 269
AluI	AGCT	2 cut(s)	87, 269
Alw26I	GTCTC	1 cut(s)	311
AoxI	GGCC	1 cut(s)	240
ApeKI	GCWGC	3 cut(s)	67, 84, 100
AspLEI	GCGC	2 cut(s)	23, 200
AspS9I	GGNCC	1 cut(s)	60
AsuHPI	GGTGA	3 cut(s)	173, 287, 289
AvaII	GGWCC	1 cut(s)	60
BbvI	GCAGC	3 cut(s)	54, 87, 96
BceAI	ACGGC	1 cut(s)	55
BclI	TGATCA	1 cut(s)	279
BcoDI	GTCTC	1 cut(s)	311
BfmI	CTRYAG	1 cut(s)	270
BfoI	RGCGCY	1 cut(s)	24
BisI	GCNGC	3 cut(s)	68, 85, 101
BlsI	GCNGC	3 cut(s)	69, 86, 102
Bme18I	GGWCC	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	62
Bpu10I	CCTNAGC	1 cut(s)	88
BsaI	GGTCTC	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse118I	RCCGGY	1 cut(s)	242
BseGI	GGATG	1 cut(s)	126
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMII	CTCAG	1 cut(s)	306
BseRI	GAGGAG	1 cut(s)	301
BseXI	GCAGC	3 cut(s)	54, 87, 96
Bsh1236I	CGCG	1 cut(s)	134
BshFI	GGCC	1 cut(s)	242
BsiSI	CCGG	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmAI	GTCTC	1 cut(s)	311
BsmFI	GGGAC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	242
Bso31I	GGTCTC	1 cut(s)	311
Bsp143I	GATC	2 cut(s)	279, 322
BspACI	CCGC	2 cut(s)	65, 145
BspANI	GGCC	1 cut(s)	242
BspCNI	CTCAG	1 cut(s)	307
BspFNI	CGCG	1 cut(s)	134
BspLI	GGNNCC	1 cut(s)	62
BspTNI	GGTCTC	1 cut(s)	311
BsrFI	RCCGGY	1 cut(s)	242
BssAI	RCCGGY	1 cut(s)	242
BssMI	GATC	2 cut(s)	279, 322
Bst4CI	ACNGT	1 cut(s)	302
Bst6I	CTCTTC	3 cut(s)	83, 160, 168
BstC8I	GCNNGC	2 cut(s)	183, 244
BstDEI	CTNAG	2 cut(s)	88, 315
BstF5I	GGATG	1 cut(s)	126
BstFNI	CGCG	1 cut(s)	134
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	2 cut(s)	23, 200
BstKTI	GATC	2 cut(s)	282, 325
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	2 cut(s)	279, 322
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 187
BstSFI	CTRYAG	1 cut(s)	270
BstUI	CGCG	1 cut(s)	134
BstV1I	GCAGC	3 cut(s)	54, 87, 96
BsuRI	GGCC	1 cut(s)	242
BtgZI	GCGATG	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	126
BtsIMutI	CAGTG	1 cut(s)	298
Cac8I	GCNNGC	2 cut(s)	183, 244
CfoI	GCGC	2 cut(s)	23, 200
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	60
CseI	GACGC	1 cut(s)	268
Csp6I	GTAC	2 cut(s)	73, 303
CspCI	CAANNNNNGTGG	2 cut(s)	287, 322
CviAII	CATG	1 cut(s)	193
CviJI	RGCY	6 cut(s)	87, 181, 190, 242, 256, 269
CviKI_1	RGCY	6 cut(s)	87, 181, 190, 242, 256, 269
CviQI	GTAC	2 cut(s)	73, 303
DdeI	CTNAG	2 cut(s)	88, 315
DpnI	GATC	2 cut(s)	281, 324
DpnII	GATC	2 cut(s)	279, 322
EaeI	YGGCCR	1 cut(s)	240
Eam1104I	CTCTTC	3 cut(s)	83, 160, 168
EarI	CTCTTC	3 cut(s)	83, 160, 168
Eco31I	GGTCTC	1 cut(s)	311
Eco47I	GGWCC	1 cut(s)	60
EcoO109I	RGGNCCY	1 cut(s)	60
FaeI	CATG	1 cut(s)	196
FaiI	YATR	5 cut(s)	26, 55, 142, 194, 236
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	1 cut(s)	192
FauI	CCCGC	1 cut(s)	72
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	3 cut(s)	68, 85, 101
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	3 cut(s)	68, 85, 101
GlaI	GCGC	2 cut(s)	22, 199
GluI	GCNGC	3 cut(s)	68, 85, 101
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	242
HapII	CCGG	1 cut(s)	243
HgaI	GACGC	1 cut(s)	268
HhaI	GCGC	2 cut(s)	23, 200
Hin1II	CATG	1 cut(s)	196
Hin6I	GCGC	2 cut(s)	21, 198
HinP1I	GCGC	2 cut(s)	21, 198
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	3 cut(s)	173, 287, 289
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	2 cut(s)	316, 327
Hpy188III	TCNNGA	1 cut(s)	206
Hpy8I	GTNNAC	1 cut(s)	46
Hpy99I	CGWCG	1 cut(s)	262
HpyAV	CCTTC	1 cut(s)	213
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4V	TGCA	3 cut(s)	11, 119, 227
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 187
HpyF3I	CTNAG	2 cut(s)	88, 315
Hsp92II	CATG	1 cut(s)	196
HspAI	GCGC	2 cut(s)	21, 198
KroI	GCCGGC	1 cut(s)	242
KroNI	GCCGGC	1 cut(s)	244
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	2 cut(s)	279, 322
LmnI	GCTCC	1 cut(s)	314
LpnPI	CCDG	3 cut(s)	21, 195, 256
Lsp1109I	GCAGC	3 cut(s)	54, 87, 96
MalI	GATC	2 cut(s)	281, 324
MboI	GATC	2 cut(s)	279, 322
MboII	GAAGA	4 cut(s)	70, 147, 176, 185
MfeI	CAATTG	1 cut(s)	228
MluCI	AATT	1 cut(s)	228
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	311
MnlI	CCTC	6 cut(s)	51, 86, 140, 163, 268, 322
MroNI	GCCGGC	1 cut(s)	242
MseI	TTAA	2 cut(s)	95, 334
MspA1I	CMGCKG	1 cut(s)	67
MspI	CCGG	1 cut(s)	243
MunI	CAATTG	1 cut(s)	228
MvnI	CGCG	1 cut(s)	134
MwoI	GCNNNNNNNGC	2 cut(s)	29, 187
NaeI	GCCGGC	1 cut(s)	244
NdeII	GATC	2 cut(s)	279, 322
NgoMIV	GCCGGC	1 cut(s)	242
NlaIII	CATG	1 cut(s)	196
NlaIV	GGNNCC	1 cut(s)	62
PdiI	GCCGGC	1 cut(s)	244
PkrI	GCNGC	3 cut(s)	69, 86, 102
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PpuMI	RGGWCCY	1 cut(s)	60
Psp5II	RGGWCCY	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	62
PspPI	GGNCC	1 cut(s)	60
PspPPI	RGGWCCY	1 cut(s)	60
RsaI	GTAC	2 cut(s)	74, 304
RsaNI	GTAC	2 cut(s)	73, 303
SaqAI	TTAA	2 cut(s)	95, 334
SatI	GCNGC	3 cut(s)	68, 85, 101
Sau3AI	GATC	2 cut(s)	279, 322
Sau96I	GGNCC	1 cut(s)	60
SchI	GAGTC	1 cut(s)	13
SetI	ASST	7 cut(s)	54, 62, 78, 89, 94, 271, 279
SfcI	CTRYAG	1 cut(s)	270
SinI	GGWCC	1 cut(s)	60
Sse9I	AATT	1 cut(s)	228
SsiI	CCGC	2 cut(s)	65, 145
TaaI	ACNGT	1 cut(s)	302
TaqII	GACCGA	1 cut(s)	335
TasI	AATT	1 cut(s)	228
TatI	WGTACW	1 cut(s)	302
Tru1I	TTAA	2 cut(s)	95, 334
Tru9I	TTAA	2 cut(s)	95, 334
TscAI	CASTG	1 cut(s)	305
TseI	GCWGC	3 cut(s)	67, 84, 100
TspDTI	ATGAA	2 cut(s)	129, 186
TspRI	CASTG	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.