Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001427.1

Orthogroup ID

OG0008321

Physical Location & Seq

Genomic Coordinates Reverse (-)

69061 .. 69666

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001427.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atgaggcctacaagtacaagcagtactacatcctcaaccactagatcagcactactccatccatggaagtctccagttccttacctctttggcggcttagccttaatgttactgctcatttttgttgcattgatcattcttctatggtcataccacaaatcgcgctcctccaactcatcaattgaagaagatcatgaagagaagccaacaaaagcgatgaaaaatacagtgtttgatactgatctaccaaagattgttgtcataataaatgccggagaagacaagcccacgcagttagccacaccactccatccatggaagtctccagttccttacctctttggcggcttagccttaatgttactgctcatttttgttgcattgatcgttcttctatggtcataccacaaatcgcgctcctccaactcatcaattgaagaagatcatgaagagaagccaacaaaagcgatgaacaatacagtgtttgatactgatcaaccaaagattgttgtcataataaacgccggagaagacaagcccacgcagttagccacaccagtcgcttacacttgctcttgctcttgctcttcttctgatcaagtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0032879 GO:0032890 GO:0034762 GO:0034765 GO:0043269 GO:0044070 GO:0050789 GO:0051049 GO:0051952 GO:0051955 GO:0065007 GO:0080143 GO:1903789 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

201

Amino Acids

22.2

Weight (kDa)

6.29

Isoelectric Point (pI)

55.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30725
fragaria_vesca	FvH4_6g45940
malus_domestica	MD09G1078800.v1.1 MD17G1069100.v1.1
prunus_persica	Prupe.3G245400_v2.0.a1
pyrus_communis	pycom09g00560
rosa_chinensis	RchiOBHm_Chr2g0164151 RchiOBHm_Chr2g0164161
rosa_laevigata	RLG00000021439 RLG00000021440
rosa_multiflora	Rmu_sc0001427.1_g000018 Rmu_sc0001427.1_g000019
rosa_roxburghii	Rroxscaffold_2G00086750
rosa_rugosa	Rorug02G0506700 Rorug02G0506700
rosa_samantha	Rh2AG575000 Rh2AG575100 Rh2BG585600 Rh2BG585700 Rh2CG556400 Rh2CG556500 Rh2DG595200
rosa_wichuraiana	Rw2G047590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	163, 415
AciI	CCGC	2 cut(s)	93, 345
AfaI	GTAC	2 cut(s)	16, 25
AgsI	TTSAA	2 cut(s)	185, 437
Alw26I	GTCTC	2 cut(s)	75, 327
AoxI	GGCC	1 cut(s)	5
AspLEI	GCGC	2 cut(s)	165, 417
BbsI	GAAGAC	2 cut(s)	285, 537
BccI	CCATC	2 cut(s)	66, 318
BclI	TGATCA	3 cut(s)	132, 493, 595
BcoDI	GTCTC	2 cut(s)	75, 327
BfaI	CTAG	1 cut(s)	42
BisI	GCNGC	2 cut(s)	94, 346
BlpI	GCTNAGC	2 cut(s)	97, 349
BlsI	GCNGC	2 cut(s)	95, 347
BmcAI	AGTACT	1 cut(s)	25
BpiI	GAAGAC	2 cut(s)	285, 537
BpmI	CTGGAG	2 cut(s)	57, 309
Bpu1102I	GCTNAGC	2 cut(s)	97, 349
BsaBI	GATNNNNATC	2 cut(s)	240, 492
BsaJI	CCNNGG	2 cut(s)	62, 314
Bse1I	ACTGG	3 cut(s)	74, 326, 557
Bse8I	GATNNNNATC	2 cut(s)	240, 492
BseDI	CCNNGG	2 cut(s)	62, 314
BseGI	GGATG	3 cut(s)	29, 58, 310
BseJI	GATNNNNATC	2 cut(s)	240, 492
BseNI	ACTGG	3 cut(s)	74, 326, 557
BseRI	GAGGAG	2 cut(s)	157, 409
Bsh1236I	CGCG	2 cut(s)	163, 415
BshFI	GGCC	1 cut(s)	7
BsiSI	CCGG	2 cut(s)	273, 525
BsmAI	GTCTC	2 cut(s)	75, 327
BsnI	GGCC	1 cut(s)	7
Bsp143I	GATC	8 cut(s)	44, 132, 190, 241, 384, 442, 493, 595
Bsp1720I	GCTNAGC	2 cut(s)	97, 349
Bsp19I	CCATGG	2 cut(s)	62, 314
BspACI	CCGC	2 cut(s)	93, 345
BspANI	GGCC	1 cut(s)	7
BspFNI	CGCG	2 cut(s)	163, 415
BspHI	TCATGA	2 cut(s)	193, 445
BspQI	GCTCTTC	1 cut(s)	592
BsrI	ACTGG	3 cut(s)	74, 326, 557
BssECI	CCNNGG	2 cut(s)	62, 314
BssMI	GATC	8 cut(s)	44, 132, 190, 241, 384, 442, 493, 595
BssT1I	CCWWGG	2 cut(s)	62, 314
Bst4CI	ACNGT	2 cut(s)	229, 481
Bst6I	CTCTTC	3 cut(s)	192, 444, 592
BstDEI	CTNAG	2 cut(s)	97, 349
BstDSI	CCRYGG	2 cut(s)	62, 314
BstF5I	GGATG	3 cut(s)	29, 58, 310
BstFNI	CGCG	2 cut(s)	163, 415
BstHHI	GCGC	2 cut(s)	165, 417
BstKTI	GATC	8 cut(s)	47, 135, 193, 244, 387, 445, 496, 598
BstMAI	GTCTC	2 cut(s)	75, 327
BstMBI	GATC	8 cut(s)	44, 132, 190, 241, 384, 442, 493, 595
BstUI	CGCG	2 cut(s)	163, 415
BstV2I	GAAGAC	2 cut(s)	285, 537
BsuRI	GGCC	1 cut(s)	7
BtgI	CCRYGG	2 cut(s)	62, 314
BtgZI	GCGATG	2 cut(s)	230, 482
BtsCI	GGATG	3 cut(s)	29, 58, 310
BtsIMutI	CAGTG	2 cut(s)	234, 486
CciI	TCATGA	2 cut(s)	193, 445
CfoI	GCGC	2 cut(s)	165, 417
Csp6I	GTAC	2 cut(s)	15, 24
CviAII	CATG	4 cut(s)	63, 194, 315, 446
CviQI	GTAC	2 cut(s)	15, 24
DdeI	CTNAG	2 cut(s)	97, 349
DpnI	GATC	8 cut(s)	46, 134, 192, 243, 386, 444, 495, 597
DpnII	GATC	8 cut(s)	44, 132, 190, 241, 384, 442, 493, 595
Eam1104I	CTCTTC	3 cut(s)	192, 444, 592
EarI	CTCTTC	3 cut(s)	192, 444, 592
Eco130I	CCWWGG	2 cut(s)	62, 314
Eco147I	AGGCCT	1 cut(s)	7
EcoT14I	CCWWGG	2 cut(s)	62, 314
ErhI	CCWWGG	2 cut(s)	62, 314
FaeI	CATG	4 cut(s)	66, 197, 318, 449
FatI	CATG	4 cut(s)	62, 193, 314, 445
FbaI	TGATCA	3 cut(s)	132, 493, 595
Fnu4HI	GCNGC	2 cut(s)	94, 346
FokI	GGATG	3 cut(s)	16, 45, 297
Fsp4HI	GCNGC	2 cut(s)	94, 346
FspBI	CTAG	1 cut(s)	42
GlaI	GCGC	2 cut(s)	164, 416
GluI	GCNGC	2 cut(s)	94, 346
GsuI	CTGGAG	2 cut(s)	57, 309
HaeIII	GGCC	1 cut(s)	7
HapII	CCGG	2 cut(s)	273, 525
HhaI	GCGC	2 cut(s)	165, 417
Hin1II	CATG	4 cut(s)	66, 197, 318, 449
Hin6I	GCGC	2 cut(s)	163, 415
HinP1I	GCGC	2 cut(s)	163, 415
HpaII	CCGG	2 cut(s)	273, 525
Hpy188I	TCNGA	1 cut(s)	595
Hpy188III	TCNNGA	2 cut(s)	194, 446
HpyCH4III	ACNGT	2 cut(s)	229, 481
HpyCH4V	TGCA	2 cut(s)	128, 380
HpyF3I	CTNAG	2 cut(s)	97, 349
Hsp92II	CATG	4 cut(s)	66, 197, 318, 449
HspAI	GCGC	2 cut(s)	163, 415
Ksp22I	TGATCA	3 cut(s)	132, 493, 595
Kzo9I	GATC	8 cut(s)	44, 132, 190, 241, 384, 442, 493, 595
LguI	GCTCTTC	1 cut(s)	592
LmnI	GCTCC	2 cut(s)	170, 422
LpnPI	CCDG	5 cut(s)	87, 286, 339, 538, 570
MaeI	CTAG	1 cut(s)	42
MaeIII	GTNAC	2 cut(s)	108, 360
MalI	GATC	8 cut(s)	46, 134, 192, 243, 386, 444, 495, 597
MboI	GATC	8 cut(s)	44, 132, 190, 241, 384, 442, 493, 595
MfeI	CAATTG	2 cut(s)	180, 432
MluCI	AATT	2 cut(s)	180, 432
MmeI	TCCRAC	2 cut(s)	195, 447
MnlI	CCTC	5 cut(s)	43, 95, 178, 347, 430
MseI	TTAA	2 cut(s)	104, 356
MspI	CCGG	2 cut(s)	273, 525
MunI	CAATTG	2 cut(s)	180, 432
MvnI	CGCG	2 cut(s)	163, 415
NcoI	CCATGG	2 cut(s)	62, 314
NdeII	GATC	8 cut(s)	44, 132, 190, 241, 384, 442, 493, 595
NlaIII	CATG	4 cut(s)	66, 197, 318, 449
PagI	TCATGA	2 cut(s)	193, 445
PceI	AGGCCT	1 cut(s)	7
PciSI	GCTCTTC	1 cut(s)	592
PkrI	GCNGC	2 cut(s)	95, 347
RsaI	GTAC	2 cut(s)	16, 25
RsaNI	GTAC	2 cut(s)	15, 24
SapI	GCTCTTC	1 cut(s)	592
SaqAI	TTAA	2 cut(s)	104, 356
SatI	GCNGC	2 cut(s)	94, 346
Sau3AI	GATC	8 cut(s)	44, 132, 190, 241, 384, 442, 493, 595
ScaI	AGTACT	1 cut(s)	25
SetI	ASST	2 cut(s)	87, 339
Sse9I	AATT	2 cut(s)	180, 432
SseBI	AGGCCT	1 cut(s)	7
SsiI	CCGC	2 cut(s)	93, 345
SspMI	CTAG	1 cut(s)	42
StuI	AGGCCT	1 cut(s)	7
StyI	CCWWGG	2 cut(s)	62, 314
TaaI	ACNGT	2 cut(s)	229, 481
TasI	AATT	2 cut(s)	180, 432
TatI	WGTACW	2 cut(s)	14, 23
TauI	GCSGC	2 cut(s)	96, 348
Tru1I	TTAA	2 cut(s)	104, 356
Tru9I	TTAA	2 cut(s)	104, 356
TscAI	CASTG	2 cut(s)	234, 486
TspDTI	ATGAA	4 cut(s)	210, 233, 462, 485
TspRI	CASTG	2 cut(s)	234, 486
XcmI	CCANNNNNNNNNTGG	1 cut(s)	312
XspI	CTAG	1 cut(s)	42
ZrmI	AGTACT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.