Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0008321

Physical Location & Seq

Genomic Coordinates Reverse (-)

5602020 .. 5602352

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1069100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGAGTCCTGCAACTGCAAGTGCCACATCAGCAACCACCAAAGCCCACCACCTATGGAGGTCTCCGTTGCCGTACCTCTTCGGCGGCTTAGGCTTAATGCTGCTGCTCATTTCTGTTGCATTGATCATCCTCGCGTGTTCGTACCTCAAACCCTCTTCGAGTGAAGATGAAGAGAAGCAAGCAAAGCCCGCGAGCACAGTTCTTGACGATGAGAGAAGGATTGCAATCGTCTTAATGGCCGGGGACGACAAACCAACGCACTTAGCTACAGAGGTGATCACACCAACAACGCACTACTGTACTTGCTCTTCTGAGACCGATCAGAAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0032879 GO:0032890 GO:0034762 GO:0034765 GO:0043269 GO:0044070 GO:0050789 GO:0051049 GO:0051952 GO:0051955 GO:0065007 GO:0080143 GO:1903789 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

11.83

Weight (kDa)

5.71

Isoelectric Point (pI)

66.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30725
fragaria_vesca	FvH4_6g45940
malus_domestica	MD09G1078800.v1.1 MD17G1069100.v1.1
prunus_persica	Prupe.3G245400_v2.0.a1
pyrus_communis	pycom09g00560
rosa_chinensis	RchiOBHm_Chr2g0164151 RchiOBHm_Chr2g0164161
rosa_laevigata	RLG00000021439 RLG00000021440
rosa_multiflora	Rmu_sc0001427.1_g000018 Rmu_sc0001427.1_g000019
rosa_roxburghii	Rroxscaffold_2G00086750
rosa_rugosa	Rorug02G0506700 Rorug02G0506700
rosa_samantha	Rh2AG575000 Rh2AG575100 Rh2BG585600 Rh2BG585700 Rh2CG556400 Rh2CG556500 Rh2DG595200
rosa_wichuraiana	Rw2G047590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	134, 191
AciI	CCGC	2 cut(s)	84, 189
AcoI	YGGCCR	1 cut(s)	237
AfaI	GTAC	3 cut(s)	74, 143, 301
AluBI	AGCT	1 cut(s)	266
AluI	AGCT	1 cut(s)	266
Alw21I	GWGCWC	1 cut(s)	197
Alw26I	GTCTC	2 cut(s)	66, 308
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	2 cut(s)	100, 103
AsuC2I	CCSGG	1 cut(s)	241
AsuHPI	GGTGA	1 cut(s)	286
BarI	GAAGNNNNNNTAC	2 cut(s)	292, 324
Bbv12I	GWGCWC	1 cut(s)	197
BbvI	GCAGC	2 cut(s)	87, 90
BceAI	ACGGC	1 cut(s)	55
BclI	TGATCA	2 cut(s)	123, 276
BcnI	CCSGG	1 cut(s)	241
BcoDI	GTCTC	2 cut(s)	66, 308
BfmI	CTRYAG	1 cut(s)	267
BisI	GCNGC	3 cut(s)	85, 101, 104
BlsI	GCNGC	3 cut(s)	86, 102, 105
Bme1390I	CCNGG	1 cut(s)	241
BmrFI	CCNGG	1 cut(s)	241
Bpu10I	CCTNAGC	1 cut(s)	88
BpuMI	CCSGG	1 cut(s)	241
BsaBI	GATNNNNATC	1 cut(s)	224
BsaI	GGTCTC	2 cut(s)	66, 308
BsaJI	CCNNGG	1 cut(s)	240
Bse8I	GATNNNNATC	1 cut(s)	224
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	1 cut(s)	126
BseJI	GATNNNNATC	1 cut(s)	224
BseMII	CTCAG	1 cut(s)	303
BseXI	GCAGC	2 cut(s)	87, 90
Bsh1236I	CGCG	2 cut(s)	134, 191
BshFI	GGCC	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	197
BsiSI	CCGG	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	257
BsmAI	GTCTC	2 cut(s)	66, 308
BsmFI	GGGAC	1 cut(s)	257
BsnI	GGCC	1 cut(s)	239
Bso31I	GGTCTC	2 cut(s)	66, 308
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	3 cut(s)	123, 276, 319
BspACI	CCGC	2 cut(s)	84, 189
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	1 cut(s)	304
BspFNI	CGCG	2 cut(s)	134, 191
BspQI	GCTCTTC	1 cut(s)	313
BspTNI	GGTCTC	2 cut(s)	66, 308
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	3 cut(s)	123, 276, 319
Bst4CI	ACNGT	2 cut(s)	199, 299
Bst6I	CTCTTC	4 cut(s)	83, 160, 165, 313
BstC8I	GCNNGC	3 cut(s)	180, 189, 193
BstDEI	CTNAG	3 cut(s)	88, 262, 312
BstF5I	GGATG	1 cut(s)	126
BstFNI	CGCG	2 cut(s)	134, 191
BstKTI	GATC	3 cut(s)	126, 279, 322
BstMAI	GTCTC	2 cut(s)	66, 308
BstMBI	GATC	3 cut(s)	123, 276, 319
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 90, 184, 188
BstSCI	CCNGG	1 cut(s)	239
BstSFI	CTRYAG	1 cut(s)	267
BstUI	CGCG	2 cut(s)	134, 191
BstV1I	GCAGC	2 cut(s)	87, 90
BsuRI	GGCC	1 cut(s)	239
BtsCI	GGATG	1 cut(s)	126
Cac8I	GCNNGC	3 cut(s)	180, 189, 193
Csp6I	GTAC	3 cut(s)	73, 142, 300
CviJI	RGCY	6 cut(s)	44, 87, 93, 187, 239, 266
CviKI_1	RGCY	6 cut(s)	44, 87, 93, 187, 239, 266
CviQI	GTAC	3 cut(s)	73, 142, 300
DdeI	CTNAG	3 cut(s)	88, 262, 312
DpnI	GATC	3 cut(s)	125, 278, 321
DpnII	GATC	3 cut(s)	123, 276, 319
EaeI	YGGCCR	1 cut(s)	237
Eam1104I	CTCTTC	4 cut(s)	83, 160, 165, 313
EarI	CTCTTC	4 cut(s)	83, 160, 165, 313
Eco31I	GGTCTC	2 cut(s)	66, 308
FaiI	YATR	1 cut(s)	55
FaqI	GGGAC	1 cut(s)	257
FauI	CCCGC	1 cut(s)	196
FbaI	TGATCA	2 cut(s)	123, 276
Fnu4HI	GCNGC	3 cut(s)	85, 101, 104
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	3 cut(s)	85, 101, 104
GluI	GCNGC	3 cut(s)	85, 101, 104
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	1 cut(s)	240
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	1 cut(s)	286
Hpy188I	TCNGA	2 cut(s)	313, 324
Hpy188III	TCNNGA	1 cut(s)	203
HpyAV	CCTTC	1 cut(s)	210
HpyCH4III	ACNGT	2 cut(s)	199, 299
HpyCH4V	TGCA	4 cut(s)	11, 17, 119, 224
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 90, 184, 188
HpyF3I	CTNAG	3 cut(s)	88, 262, 312
Ksp22I	TGATCA	2 cut(s)	123, 276
Kzo9I	GATC	3 cut(s)	123, 276, 319
LguI	GCTCTTC	1 cut(s)	313
LpnPI	CCDG	2 cut(s)	21, 253
Lsp1109I	GCAGC	2 cut(s)	87, 90
MalI	GATC	3 cut(s)	125, 278, 321
MboI	GATC	3 cut(s)	123, 276, 319
MboII	GAAGA	5 cut(s)	70, 147, 176, 182, 300
MhlI	GDGCHC	1 cut(s)	197
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	6 cut(s)	51, 86, 140, 155, 163, 265
MseI	TTAA	2 cut(s)	95, 233
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	1 cut(s)	241
MvnI	CGCG	2 cut(s)	134, 191
MwoI	GCNNNNNNNGC	4 cut(s)	29, 90, 184, 188
NciI	CCSGG	1 cut(s)	241
NdeII	GATC	3 cut(s)	123, 276, 319
PciSI	GCTCTTC	1 cut(s)	313
PkrI	GCNGC	3 cut(s)	86, 102, 105
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
RsaI	GTAC	3 cut(s)	74, 143, 301
RsaNI	GTAC	3 cut(s)	73, 142, 300
SapI	GCTCTTC	1 cut(s)	313
SaqAI	TTAA	2 cut(s)	95, 233
SatI	GCNGC	3 cut(s)	85, 101, 104
Sau3AI	GATC	3 cut(s)	123, 276, 319
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	241
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	6 cut(s)	54, 62, 78, 147, 268, 276
SfcI	CTRYAG	1 cut(s)	267
SsiI	CCGC	2 cut(s)	84, 189
StyD4I	CCNGG	1 cut(s)	239
TaaI	ACNGT	2 cut(s)	199, 299
TaqI	TCGA	1 cut(s)	158
TaqII	GACCGA	1 cut(s)	332
TatI	WGTACW	1 cut(s)	299
TauI	GCSGC	1 cut(s)	87
Tru1I	TTAA	2 cut(s)	95, 233
Tru9I	TTAA	2 cut(s)	95, 233
TseI	GCWGC	2 cut(s)	100, 103
TspDTI	ATGAA	1 cut(s)	183
TspGWI	ACGGA	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.