RchiOBHm_Chr2g0164151

Protein GLUTAMINE DUMPER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0008321
Physical Location & Seq
Forward (+)
79370115 .. 79370474
360 bp
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UTR
Exon/CDS
Intron
PRQ53225

Sequence Viewer

Length: 360 bp
ATGAGGCCTACTAGTACAAGCAGTACTACATCCTCAACCACTAGATCAGCACTACTCCATCCATGGAAGTCTCCAGTTCCTTACCTCTTTGGCGGCTTAGCCTTAATGTTACTGCTCATTTTTGTTGCATTGATCATTCTTCTATGGTCATACCACAAATCGCGCTCCTCCAACTCATCAATTGAAGAAGATCATGAAGAGAAGCCAACAAAAGCGATGAAAAATACAGTGTTTGATACTGATCTACCAAAGATTGTTGTCATAATAAATGCCGGAGAAGACAAGCCCACGCAGTTAGCCACACCAGTCGCTTCCACTTGCTCTTGCTCTTGCTCTTGCTCTTCTTCTGATCAAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.92

Weight (kDa)

6.81

Isoelectric Point (pI)

61.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 163
AciI CCGC 1 cut(s) 93
AfaI GTAC 2 cut(s) 16, 25
AgsI TTSAA 1 cut(s) 185
AhlI ACTAGT 1 cut(s) 11
Alw26I GTCTC 1 cut(s) 75
AoxI GGCC 1 cut(s) 5
AspLEI GCGC 1 cut(s) 165
BbsI GAAGAC 1 cut(s) 285
BccI CCATC 1 cut(s) 66
BclI TGATCA 2 cut(s) 132, 349
BcoDI GTCTC 1 cut(s) 75
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 2 cut(s) 12, 42
BisI GCNGC 1 cut(s) 94
BlpI GCTNAGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 95
BmcAI AGTACT 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 285
BpmI CTGGAG 1 cut(s) 57
Bpu1102I GCTNAGC 1 cut(s) 97
BsaBI GATNNNNATC 1 cut(s) 240
BsaJI CCNNGG 1 cut(s) 62
Bse1I ACTGG 2 cut(s) 74, 305
Bse8I GATNNNNATC 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 62
BseGI GGATG 2 cut(s) 29, 58
BseJI GATNNNNATC 1 cut(s) 240
BseNI ACTGG 2 cut(s) 74, 305
BseRI GAGGAG 1 cut(s) 157
Bsh1236I CGCG 1 cut(s) 163
BshFI GGCC 1 cut(s) 7
BsiSI CCGG 1 cut(s) 273
BsmAI GTCTC 1 cut(s) 75
BsnI GGCC 1 cut(s) 7
Bsp143I GATC 5 cut(s) 44, 132, 190, 241, 349
Bsp1720I GCTNAGC 1 cut(s) 97
Bsp19I CCATGG 1 cut(s) 62
BspACI CCGC 1 cut(s) 93
BspANI GGCC 1 cut(s) 7
BspFNI CGCG 1 cut(s) 163
BspHI TCATGA 1 cut(s) 193
BspQI GCTCTTC 1 cut(s) 346
BsrI ACTGG 2 cut(s) 74, 305
BssECI CCNNGG 1 cut(s) 62
BssMI GATC 5 cut(s) 44, 132, 190, 241, 349
BssT1I CCWWGG 1 cut(s) 62
Bst4CI ACNGT 1 cut(s) 229
Bst6I CTCTTC 2 cut(s) 192, 346
BstDEI CTNAG 1 cut(s) 97
BstDSI CCRYGG 1 cut(s) 62
BstF5I GGATG 2 cut(s) 29, 58
BstFNI CGCG 1 cut(s) 163
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 5 cut(s) 47, 135, 193, 244, 352
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 5 cut(s) 44, 132, 190, 241, 349
BstUI CGCG 1 cut(s) 163
BstV2I GAAGAC 1 cut(s) 285
BsuRI GGCC 1 cut(s) 7
BtgI CCRYGG 1 cut(s) 62
BtgZI GCGATG 1 cut(s) 230
BtsCI GGATG 2 cut(s) 29, 58
BtsIMutI CAGTG 1 cut(s) 234
CciI TCATGA 1 cut(s) 193
CfoI GCGC 1 cut(s) 165
Csp6I GTAC 2 cut(s) 15, 24
CviAII CATG 2 cut(s) 63, 194
CviJI RGCY 6 cut(s) 7, 96, 101, 205, 286, 299
CviKI_1 RGCY 6 cut(s) 7, 96, 101, 205, 286, 299
CviQI GTAC 2 cut(s) 15, 24
DdeI CTNAG 1 cut(s) 97
DpnI GATC 5 cut(s) 46, 134, 192, 243, 351
DpnII GATC 5 cut(s) 44, 132, 190, 241, 349
Eam1104I CTCTTC 2 cut(s) 192, 346
EarI CTCTTC 2 cut(s) 192, 346
Eco130I CCWWGG 1 cut(s) 62
Eco147I AGGCCT 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 62
ErhI CCWWGG 1 cut(s) 62
FaeI CATG 2 cut(s) 66, 197
FaiI YATR 5 cut(s) 64, 145, 151, 195, 263
FatI CATG 2 cut(s) 62, 193
FbaI TGATCA 2 cut(s) 132, 349
Fnu4HI GCNGC 1 cut(s) 94
FokI GGATG 2 cut(s) 16, 45
Fsp4HI GCNGC 1 cut(s) 94
FspBI CTAG 2 cut(s) 12, 42
GlaI GCGC 1 cut(s) 164
GluI GCNGC 1 cut(s) 94
GsuI CTGGAG 1 cut(s) 57
HaeIII GGCC 1 cut(s) 7
HapII CCGG 1 cut(s) 273
HhaI GCGC 1 cut(s) 165
Hin1II CATG 2 cut(s) 66, 197
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HpaII CCGG 1 cut(s) 273
Hpy188I TCNGA 1 cut(s) 349
Hpy188III TCNNGA 1 cut(s) 194
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4V TGCA 1 cut(s) 128
HpyF3I CTNAG 1 cut(s) 97
Hsp92II CATG 2 cut(s) 66, 197
HspAI GCGC 1 cut(s) 163
Ksp22I TGATCA 2 cut(s) 132, 349
Kzo9I GATC 5 cut(s) 44, 132, 190, 241, 349
LguI GCTCTTC 1 cut(s) 346
LmnI GCTCC 1 cut(s) 170
LpnPI CCDG 3 cut(s) 87, 286, 318
MaeI CTAG 2 cut(s) 12, 42
MaeIII GTNAC 1 cut(s) 108
MalI GATC 5 cut(s) 46, 134, 192, 243, 351
MboI GATC 5 cut(s) 44, 132, 190, 241, 349
MboII GAAGA 7 cut(s) 131, 197, 200, 209, 290, 333, 336
MfeI CAATTG 1 cut(s) 180
MluCI AATT 1 cut(s) 180
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 3 cut(s) 43, 95, 178
MseI TTAA 1 cut(s) 104
MspI CCGG 1 cut(s) 273
MunI CAATTG 1 cut(s) 180
MvnI CGCG 1 cut(s) 163
NcoI CCATGG 1 cut(s) 62
NdeII GATC 5 cut(s) 44, 132, 190, 241, 349
NlaIII CATG 2 cut(s) 66, 197
PagI TCATGA 1 cut(s) 193
PceI AGGCCT 1 cut(s) 7
PciSI GCTCTTC 1 cut(s) 346
PkrI GCNGC 1 cut(s) 95
RsaI GTAC 2 cut(s) 16, 25
RsaNI GTAC 2 cut(s) 15, 24
SapI GCTCTTC 1 cut(s) 346
SaqAI TTAA 1 cut(s) 104
SatI GCNGC 1 cut(s) 94
Sau3AI GATC 5 cut(s) 44, 132, 190, 241, 349
ScaI AGTACT 1 cut(s) 25
SetI ASST 1 cut(s) 87
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 1 cut(s) 180
SseBI AGGCCT 1 cut(s) 7
SsiI CCGC 1 cut(s) 93
SspMI CTAG 2 cut(s) 12, 42
StuI AGGCCT 1 cut(s) 7
StyI CCWWGG 1 cut(s) 62
TaaI ACNGT 1 cut(s) 229
TasI AATT 1 cut(s) 180
TatI WGTACW 2 cut(s) 14, 23
TauI GCSGC 1 cut(s) 96
Tru1I TTAA 1 cut(s) 104
Tru9I TTAA 1 cut(s) 104
TscAI CASTG 1 cut(s) 234
TspDTI ATGAA 2 cut(s) 210, 233
TspRI CASTG 1 cut(s) 234
XspI CTAG 2 cut(s) 12, 42
ZrmI AGTACT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.