Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0008321

Physical Location & Seq

Genomic Coordinates Forward (+)

80515073 .. 80515594

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG575100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGAGGCCTACAACTACAAGCAGCAGCACCAGAATTGTCCATCCATGGAAGTCTCCATTACCTTACCTCTTTGGCAGCTTAGCCGTAATACTGCTACTCATTTTTGTTGCATTGATCATCCTCGTCTGCTCGTACCGCGAGGGCTCTTCTGGATCATCAAGTGATCGAGATGAAGAGAAGCCGAAAAAGCCCAACACGAACAGTACAGTGTGCGAAGACGAGCCTAAGATTGTTGTCATAATAATGGCCGGAGAAGACCAGCCCACGCACTTGGCTACACCGGTCACCTCTGTCTGCTCTTGCTCTTGCGAGAAAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0032879 GO:0032890 GO:0034762 GO:0034765 GO:0043269 GO:0044070 GO:0050789 GO:0051049 GO:0051952 GO:0051955 GO:0065007 GO:0080143 GO:1903789 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

106

Amino Acids

11.51

Weight (kDa)

6.06

Isoelectric Point (pI)

37.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30725
fragaria_vesca	FvH4_6g45940
malus_domestica	MD09G1078800.v1.1 MD17G1069100.v1.1
prunus_persica	Prupe.3G245400_v2.0.a1
pyrus_communis	pycom09g00560
rosa_chinensis	RchiOBHm_Chr2g0164151 RchiOBHm_Chr2g0164161
rosa_laevigata	RLG00000021439 RLG00000021440
rosa_multiflora	Rmu_sc0001427.1_g000018 Rmu_sc0001427.1_g000019
rosa_roxburghii	Rroxscaffold_2G00086750
rosa_rugosa	Rorug02G0506700 Rorug02G0506700
rosa_samantha	Rh2AG575000 Rh2AG575100 Rh2BG585600 Rh2BG585700 Rh2CG556400 Rh2CG556500 Rh2DG595200
rosa_wichuraiana	Rw2G047590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	138
AciI	CCGC	1 cut(s)	136
AclWI	GGATC	1 cut(s)	160
AcoI	YGGCCR	1 cut(s)	246
AfaI	GTAC	2 cut(s)	134, 205
AgeI	ACCGGT	1 cut(s)	280
AluBI	AGCT	1 cut(s)	78
AluI	AGCT	1 cut(s)	78
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	1 cut(s)	160
AoxI	GGCC	2 cut(s)	5, 246
ApeKI	GCWGC	3 cut(s)	21, 24, 75
AsiGI	ACCGGT	1 cut(s)	280
AsuHPI	GGTGA	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	146
BbsI	GAAGAC	2 cut(s)	222, 261
BbvI	GCAGC	3 cut(s)	33, 36, 87
BccI	CCATC	1 cut(s)	48
BceAI	ACGGC	1 cut(s)	68
BclI	TGATCA	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	57
BisI	GCNGC	3 cut(s)	22, 25, 76
BlpI	GCTNAGC	1 cut(s)	79
BlsI	GCNGC	3 cut(s)	23, 26, 77
BpiI	GAAGAC	2 cut(s)	222, 261
Bpu1102I	GCTNAGC	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	44
BsaWI	WCCGGW	1 cut(s)	280
Bse118I	RCCGGY	1 cut(s)	280
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	2 cut(s)	40, 117
BseXI	GCAGC	3 cut(s)	33, 36, 87
Bsh1236I	CGCG	1 cut(s)	138
BshFI	GGCC	2 cut(s)	7, 248
BshTI	ACCGGT	1 cut(s)	280
BsiSI	CCGG	2 cut(s)	249, 281
BsmAI	GTCTC	1 cut(s)	57
BsnI	GGCC	2 cut(s)	7, 248
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp143I	GATC	3 cut(s)	114, 152, 163
Bsp1720I	GCTNAGC	1 cut(s)	79
Bsp19I	CCATGG	1 cut(s)	44
BspACI	CCGC	1 cut(s)	136
BspANI	GGCC	2 cut(s)	7, 248
BspFNI	CGCG	1 cut(s)	138
BspPI	GGATC	1 cut(s)	160
BspQI	GCTCTTC	1 cut(s)	151
BsrFI	RCCGGY	1 cut(s)	280
BssAI	RCCGGY	1 cut(s)	280
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	3 cut(s)	114, 152, 163
BssT1I	CCWWGG	1 cut(s)	44
Bst4CI	ACNGT	2 cut(s)	203, 208
Bst6I	CTCTTC	2 cut(s)	151, 168
BstDEI	CTNAG	2 cut(s)	79, 225
BstDSI	CCRYGG	1 cut(s)	44
BstEII	GGTNACC	1 cut(s)	283
BstF5I	GGATG	2 cut(s)	40, 117
BstFNI	CGCG	1 cut(s)	138
BstKTI	GATC	3 cut(s)	117, 155, 166
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	3 cut(s)	114, 152, 163
BstMWI	GCNNNNNNNGC	2 cut(s)	135, 187
BstPI	GGTNACC	1 cut(s)	283
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	3 cut(s)	33, 36, 87
BstV2I	GAAGAC	2 cut(s)	222, 261
BstXI	CCANNNNNNTGG	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	7, 248
BtgI	CCRYGG	1 cut(s)	44
BtsCI	GGATG	2 cut(s)	40, 117
BtsIMutI	CAGTG	1 cut(s)	213
Cfr10I	RCCGGY	1 cut(s)	280
Csp6I	GTAC	2 cut(s)	133, 204
CspAI	ACCGGT	1 cut(s)	280
CviAII	CATG	1 cut(s)	45
CviQI	GTAC	2 cut(s)	133, 204
DdeI	CTNAG	2 cut(s)	79, 225
DpnI	GATC	3 cut(s)	116, 154, 165
DpnII	GATC	3 cut(s)	114, 152, 163
EaeI	YGGCCR	1 cut(s)	246
Eam1104I	CTCTTC	2 cut(s)	151, 168
EarI	CTCTTC	2 cut(s)	151, 168
Eco130I	CCWWGG	1 cut(s)	44
Eco147I	AGGCCT	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	146
Eco91I	GGTNACC	1 cut(s)	283
EcoO65I	GGTNACC	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	44
EcoT38I	GRGCYC	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	44
FaeI	CATG	1 cut(s)	48
FaiI	YATR	2 cut(s)	46, 239
FatI	CATG	1 cut(s)	44
FbaI	TGATCA	1 cut(s)	114
Fnu4HI	GCNGC	3 cut(s)	22, 25, 76
FokI	GGATG	2 cut(s)	27, 104
FriOI	GRGCYC	1 cut(s)	146
Fsp4HI	GCNGC	3 cut(s)	22, 25, 76
GluI	GCNGC	3 cut(s)	22, 25, 76
HaeIII	GGCC	2 cut(s)	7, 248
HapII	CCGG	2 cut(s)	249, 281
Hin1II	CATG	1 cut(s)	48
HpaII	CCGG	2 cut(s)	249, 281
HphI	GGTGA	1 cut(s)	277
Hpy188I	TCNGA	1 cut(s)	320
Hpy188III	TCNNGA	2 cut(s)	150, 167
HpyCH4III	ACNGT	2 cut(s)	203, 208
HpyCH4V	TGCA	1 cut(s)	110
HpyF10VI	GCNNNNNNNGC	2 cut(s)	135, 187
HpyF3I	CTNAG	2 cut(s)	79, 225
Hsp92II	CATG	1 cut(s)	48
Ksp22I	TGATCA	1 cut(s)	114
Kzo9I	GATC	3 cut(s)	114, 152, 163
LguI	GCTCTTC	1 cut(s)	151
LpnPI	CCDG	5 cut(s)	43, 135, 262, 272, 294
Lsp1109I	GCAGC	3 cut(s)	33, 36, 87
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	3 cut(s)	116, 154, 165
MboI	GATC	3 cut(s)	114, 152, 163
MboII	GAAGA	4 cut(s)	138, 185, 227, 266
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	1 cut(s)	33
MnlI	CCTC	4 cut(s)	77, 131, 133, 298
MslI	CAYNNNNRTG	1 cut(s)	242
MspI	CCGG	2 cut(s)	249, 281
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	2 cut(s)	135, 187
NcoI	CCATGG	1 cut(s)	44
NdeII	GATC	3 cut(s)	114, 152, 163
NlaIII	CATG	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	283
PceI	AGGCCT	1 cut(s)	7
PciSI	GCTCTTC	1 cut(s)	151
PinAI	ACCGGT	1 cut(s)	280
PkrI	GCNGC	3 cut(s)	23, 26, 77
PspEI	GGTNACC	1 cut(s)	283
RsaI	GTAC	2 cut(s)	134, 205
RsaNI	GTAC	2 cut(s)	133, 204
RseI	CAYNNNNRTG	1 cut(s)	242
SapI	GCTCTTC	1 cut(s)	151
SatI	GCNGC	3 cut(s)	22, 25, 76
Sau3AI	GATC	3 cut(s)	114, 152, 163
SduI	GDGCHC	1 cut(s)	146
SetI	ASST	4 cut(s)	64, 69, 80, 290
SmiMI	CAYNNNNRTG	1 cut(s)	242
Sse9I	AATT	1 cut(s)	33
SseBI	AGGCCT	1 cut(s)	7
SsiI	CCGC	1 cut(s)	136
StuI	AGGCCT	1 cut(s)	7
StyI	CCWWGG	1 cut(s)	44
TaaI	ACNGT	2 cut(s)	203, 208
TaqI	TCGA	1 cut(s)	166
TasI	AATT	1 cut(s)	33
TatI	WGTACW	1 cut(s)	203
TscAI	CASTG	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	3 cut(s)	21, 24, 75
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	1 cut(s)	186
TspRI	CASTG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.