Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008321

Physical Location & Seq

Genomic Coordinates Forward (+)

73505989 .. 73506925

Gene Structure 937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG556500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGATGCCTACAACTACAAGCAGCAGCACCAGAATTGTCCATCCATGGAAGTCTCCATTACCTTACCTCTTTGGCAGCTTAGCCGTAATACTGCTACTCATTTTTGTTGCATTGATCATCCTCGTCTGCTCGTACCGCGAGGGCTCTTCTGGATCATCAAGTGATCGAGATGAAGAGAAGCCGAAAAAGCCCAACACGAACAGTACAGTGTGCGAAGACGAGCCTAAGATTGTTGTCATAATAATGGCCGGAGAAGACCAGCCCACGCACTTGGCTACACCGGTCACCTCTACGCGGCAGCTTGGAAATGCAAATACCCTAAATGAAAAGGATAGTAGAGAGGCTTTACAAAAGGGTTGTCCTGCACAGTGTGTAATGGAGGACATTTGTGAGGCTTATTTTCAAACACTTGTGGAAAGTTCTCCATCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0032879 GO:0032890 GO:0034762 GO:0034765 GO:0043269 GO:0044070 GO:0050789 GO:0051049 GO:0051952 GO:0051955 GO:0065007 GO:0080143 GO:1903789 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

15.69

Weight (kDa)

4.98

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30725
fragaria_vesca	FvH4_6g45940
malus_domestica	MD09G1078800.v1.1 MD17G1069100.v1.1
prunus_persica	Prupe.3G245400_v2.0.a1
pyrus_communis	pycom09g00560
rosa_chinensis	RchiOBHm_Chr2g0164151 RchiOBHm_Chr2g0164161
rosa_laevigata	RLG00000021439 RLG00000021440
rosa_multiflora	Rmu_sc0001427.1_g000018 Rmu_sc0001427.1_g000019
rosa_roxburghii	Rroxscaffold_2G00086750
rosa_rugosa	Rorug02G0506700 Rorug02G0506700
rosa_samantha	Rh2AG575000 Rh2AG575100 Rh2BG585600 Rh2BG585700 Rh2CG556400 Rh2CG556500 Rh2DG595200
rosa_wichuraiana	Rw2G047590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	138, 295
AciI	CCGC	2 cut(s)	136, 295
AclWI	GGATC	1 cut(s)	160
AcoI	YGGCCR	1 cut(s)	246
AdeI	CACNNNGTG	1 cut(s)	371
AfaI	GTAC	2 cut(s)	134, 205
AfiI	CCNNNNNNNGG	1 cut(s)	294
AgeI	ACCGGT	1 cut(s)	280
AgsI	TTSAA	1 cut(s)	404
AluBI	AGCT	2 cut(s)	78, 301
AluI	AGCT	2 cut(s)	78, 301
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	1 cut(s)	160
AoxI	GGCC	1 cut(s)	246
ApeKI	GCWGC	4 cut(s)	21, 24, 75, 298
ArsI	GACNNNNNNTTYG	2 cut(s)	343, 375
AsiGI	ACCGGT	1 cut(s)	280
AsuHPI	GGTGA	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	146
BbsI	GAAGAC	2 cut(s)	222, 261
BbvI	GCAGC	4 cut(s)	33, 36, 87, 310
BccI	CCATC	2 cut(s)	48, 433
BceAI	ACGGC	1 cut(s)	68
BclI	TGATCA	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	57
BisI	GCNGC	5 cut(s)	22, 25, 76, 296, 299
BlpI	GCTNAGC	1 cut(s)	79
BlsI	GCNGC	5 cut(s)	23, 26, 77, 297, 300
BpiI	GAAGAC	2 cut(s)	222, 261
Bpu1102I	GCTNAGC	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	44
BsaWI	WCCGGW	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse118I	RCCGGY	1 cut(s)	280
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	2 cut(s)	40, 117
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseXI	GCAGC	4 cut(s)	33, 36, 87, 310
BsgI	GTGCAG	1 cut(s)	348
Bsh1236I	CGCG	2 cut(s)	138, 295
BshFI	GGCC	1 cut(s)	248
BshTI	ACCGGT	1 cut(s)	280
BsiSI	CCGG	2 cut(s)	249, 281
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	57
BsnI	GGCC	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp143I	GATC	3 cut(s)	114, 152, 163
Bsp1720I	GCTNAGC	1 cut(s)	79
Bsp19I	CCATGG	1 cut(s)	44
BspACI	CCGC	2 cut(s)	136, 295
BspANI	GGCC	1 cut(s)	248
BspFNI	CGCG	2 cut(s)	138, 295
BspPI	GGATC	1 cut(s)	160
BspQI	GCTCTTC	1 cut(s)	151
BsrFI	RCCGGY	1 cut(s)	280
BssAI	RCCGGY	1 cut(s)	280
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	3 cut(s)	114, 152, 163
BssT1I	CCWWGG	1 cut(s)	44
Bst4CI	ACNGT	3 cut(s)	203, 208, 369
Bst6I	CTCTTC	2 cut(s)	151, 168
BstDEI	CTNAG	2 cut(s)	79, 225
BstDSI	CCRYGG	1 cut(s)	44
BstEII	GGTNACC	1 cut(s)	283
BstF5I	GGATG	2 cut(s)	40, 117
BstFNI	CGCG	2 cut(s)	138, 295
BstKTI	GATC	3 cut(s)	117, 155, 166
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	3 cut(s)	114, 152, 163
BstMWI	GCNNNNNNNGC	2 cut(s)	135, 187
BstPI	GGTNACC	1 cut(s)	283
BstUI	CGCG	2 cut(s)	138, 295
BstV1I	GCAGC	4 cut(s)	33, 36, 87, 310
BstV2I	GAAGAC	2 cut(s)	222, 261
BstXI	CCANNNNNNTGG	1 cut(s)	271
BsuRI	GGCC	1 cut(s)	248
BtgI	CCRYGG	1 cut(s)	44
BtsCI	GGATG	2 cut(s)	40, 117
BtsIMutI	CAGTG	2 cut(s)	213, 374
Cfr10I	RCCGGY	1 cut(s)	280
Csp6I	GTAC	2 cut(s)	133, 204
CspAI	ACCGGT	1 cut(s)	280
CviAII	CATG	1 cut(s)	45
CviQI	GTAC	2 cut(s)	133, 204
DdeI	CTNAG	2 cut(s)	79, 225
DpnI	GATC	3 cut(s)	116, 154, 165
DpnII	GATC	3 cut(s)	114, 152, 163
DraIII	CACNNNGTG	1 cut(s)	371
EaeI	YGGCCR	1 cut(s)	246
Eam1104I	CTCTTC	2 cut(s)	151, 168
EarI	CTCTTC	2 cut(s)	151, 168
Eco130I	CCWWGG	1 cut(s)	44
Eco24I	GRGCYC	1 cut(s)	146
Eco91I	GGTNACC	1 cut(s)	283
EcoO65I	GGTNACC	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	44
EcoT38I	GRGCYC	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	44
FaeI	CATG	1 cut(s)	48
FaiI	YATR	3 cut(s)	46, 239, 433
FatI	CATG	1 cut(s)	44
FbaI	TGATCA	1 cut(s)	114
Fnu4HI	GCNGC	5 cut(s)	22, 25, 76, 296, 299
FokI	GGATG	2 cut(s)	27, 104
FriOI	GRGCYC	1 cut(s)	146
Fsp4HI	GCNGC	5 cut(s)	22, 25, 76, 296, 299
GluI	GCNGC	5 cut(s)	22, 25, 76, 296, 299
HaeIII	GGCC	1 cut(s)	248
HapII	CCGG	2 cut(s)	249, 281
Hin1II	CATG	1 cut(s)	48
HpaII	CCGG	2 cut(s)	249, 281
HphI	GGTGA	1 cut(s)	277
Hpy188III	TCNNGA	2 cut(s)	150, 167
HpyCH4III	ACNGT	3 cut(s)	203, 208, 369
HpyCH4V	TGCA	3 cut(s)	110, 311, 365
HpyF10VI	GCNNNNNNNGC	2 cut(s)	135, 187
HpyF3I	CTNAG	2 cut(s)	79, 225
Hsp92II	CATG	1 cut(s)	48
Ksp22I	TGATCA	1 cut(s)	114
Kzo9I	GATC	3 cut(s)	114, 152, 163
LguI	GCTCTTC	1 cut(s)	151
LpnPI	CCDG	6 cut(s)	43, 135, 262, 272, 294, 375
Lsp1109I	GCAGC	4 cut(s)	33, 36, 87, 310
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	3 cut(s)	116, 154, 165
MboI	GATC	3 cut(s)	114, 152, 163
MboII	GAAGA	4 cut(s)	138, 185, 227, 266
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	1 cut(s)	33
MnlI	CCTC	7 cut(s)	77, 131, 133, 298, 334, 373, 385
MslI	CAYNNNNRTG	1 cut(s)	242
MspI	CCGG	2 cut(s)	249, 281
MvnI	CGCG	2 cut(s)	138, 295
MwoI	GCNNNNNNNGC	2 cut(s)	135, 187
NcoI	CCATGG	1 cut(s)	44
NdeII	GATC	3 cut(s)	114, 152, 163
NlaIII	CATG	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	283
PciSI	GCTCTTC	1 cut(s)	151
PinAI	ACCGGT	1 cut(s)	280
PkrI	GCNGC	5 cut(s)	23, 26, 77, 297, 300
PspEI	GGTNACC	1 cut(s)	283
RsaI	GTAC	2 cut(s)	134, 205
RsaNI	GTAC	2 cut(s)	133, 204
RseI	CAYNNNNRTG	1 cut(s)	242
SapI	GCTCTTC	1 cut(s)	151
SatI	GCNGC	5 cut(s)	22, 25, 76, 296, 299
Sau3AI	GATC	3 cut(s)	114, 152, 163
SduI	GDGCHC	1 cut(s)	146
SetI	ASST	5 cut(s)	64, 69, 80, 290, 303
SmiMI	CAYNNNNRTG	1 cut(s)	242
Sse9I	AATT	1 cut(s)	33
SsiI	CCGC	2 cut(s)	136, 295
StyI	CCWWGG	1 cut(s)	44
TaaI	ACNGT	3 cut(s)	203, 208, 369
TaqI	TCGA	1 cut(s)	166
TasI	AATT	1 cut(s)	33
TatI	WGTACW	1 cut(s)	203
TauI	GCSGC	1 cut(s)	298
TscAI	CASTG	2 cut(s)	213, 374
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	4 cut(s)	21, 24, 75, 298
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	2 cut(s)	186, 339
TspRI	CASTG	2 cut(s)	213, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.