MD09G1122400.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0016373
Physical Location & Seq
Forward (+)
9439974 .. 9442562
2589 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1122400.v1.1.491

Sequence Viewer

Length: 2136 bp
ATGGGCCACTCAGACGGTCGGACCCCTTGGTTGTGGTTATCATCTGATCCACCAACGCCATTGCAGGTTGCAGCAATGCTTCAGCTCACACCATCTCTCTCTCTCCTCCACAAACCATTTCTCTCTCCTCAAACCCTAAACCCCTTCTCGCTTCTCCAAACATGCAAAACCCTACAAGAAGCACAGCAGCACCACGCCCTGTTCCTCAAGACCGGAACTTTCAGCCACCCTTCAGTCGCCTCCTGCTTCCTTTCTCTCTACGCCGACCCCAAAATCAACAACCTCGACTACGCCCGCTCCGTCTTCGACCAAATCGAACAACCCTCGTTGGTGTCTTGGAACGTTCTCATCAAATGCTACGTCGGAAACCAGCGGTCGCATGATGCCATTGTTTTGTTCTATGAATTGGTTCATGAGCTTGTTCCCGATCATTTCACTGTGCCGTGCGTGATTAAGGGTTGCGCTCGGTTGAATGCGATTGAGGAAGGGAAGCAGATTCATGGGTTGGTGTTGAAAATTGGGCTGGGGTTGGATAAGTTTGTCCAGAGCAGTTTGGTGAGTTTGTACTCGAAATGTGGTGAGATTGGTTTGGCTCGGAAGGTGTTTGATGAAATGCGTGACCGAGATTTGGTAACTTGGAATTCATTGGTGGATGGGTATGCGAGGTGTGGAGAAGTAGAAGTGGCAATGGAGTTGTTTGATCAAATGCAGGAGAGGGATTTGTTTTCTTGGACTGTTTTGGTCGATGGGTTGTCGAAATGCGGGAAGGTGGAGATGGCTAGGGAGGTGTTTGATAGGATGCCAAATAGAAATTCGGTTTCTTGGAATGCCATGATTAATGGGTACATGAAAGCTGGAGAGGTTGAGACGGCTCGTCAATTATTTAGTGGGATGCCGGCAAGAGATGTGATAACTTGGAATTCAATGATTGCAGGTTATGAATTTAATGGGAGGTTTATGGAAGCATTGGAGTTGTTTCAAGAAATTTTGAAAGAAGATGTCATGCCTAGTCATGCTACATTGGTCAGTGCTCTTTCAGCCGTTTCGGGATTAGCTATCCTGAGTAAGGGGAGATGGATTCATTCTTTCATGGTAAAACATGGATTTGAGTTAGATGGCGTGCTTGGTACATCCTTGATTGATATGTATTCCAAGTGTGGGAGCATTGAGAATGCTCTGACCGTATTTCGAGCTATACACAGGAAGAAATTAGGGCATTGGACTTCTATAATTGTCGGTTTAGGAATGCATGGTATGGCTGACCAAGTTCTTGAGCTATTTCTCGAGATGCGGAAGAATGGAATGCAGCCTCATGCTATAACTTTTATTGGAGTCTTGAATGCATGTAGTCATGCCGGATTGGTCGATCTTGGCCGTTTCTATTTCAATCTGATGACAAATGATTATGGAATTGAACCCACAATTGAACACTACGGTTGCTTTGTAGACATTTTATGTCGGGCTGGCTGTCTGGATGAGGCGAAGAATGTCATTGAAAGTATGCCCATGAAACCAAACAAAGTAATCTGGATGAGTTTGCTCAGTGGTGCTCGGAATCATGGAAATGTTGAACTTGGCGATTATGCTGCTCGTCACCTGATTGAAGTGTCTCCCGACACTATTGGATGCTATGTTGTTCTTTCTAACATGTATGCTGCTGCTGATCAGTGGGAGAAAGTTTCACAGGTAAGAGAAATGATGAGAATGAGAGGAGTCAAAAAGGACCCGGGATGCAGTTCCATAGAGCACAGAGGTGTGCTTCATGAGTTTATTGTGGGTGATAAATCACACCCTCGGACAGAAGAGATATATTCGAAGTTGAGTGAGATGAGAGAGAAACTGAAATCTGTAGGACATGTTCCTGACACAAGCCAAGTTCTGTTGTGTCTTGAAGAGGAAAAAGAGAAGGAAGCTGAACTGGAAAACCATAGTGAAAGATTGGCTATTGCATTTGGTCTCATTAATTCGGAAGCTGGGAGTCCTATTCGCATTATAAAGAATCTTCGTGTCTGTAGCGATTGCCACTCTGTCACTAAACACCTATCCAGTATCTATAATCGTGAGATTATTGTGAGAGATAATAGTCGTTTCCATCATTTCAGAAATGGCTCATGTTCTTGCAAAGATTTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR

Protein Analysis

712

Amino Acids

79.97

Weight (kDa)

6.25

Isoelectric Point (pI)

37.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 108 - 156 5.8e-06 PPR repeat family
PPR_2 PF13041 209 - 240 1.1e-07 PPR repeat family
PPR_1 PF12854 209 - 237 6.1e-09 PPR repeat
PPR PF01535 211 - 240 3.7e-09 PPR repeat
PPR PF01535 242 - 271 1.5e-06 PPR repeat
PPR_2 PF13041 271 - 301 4.5e-07 PPR repeat family
PPR PF01535 273 - 301 1.1e-06 PPR repeat
PPR_2 PF13041 301 - 342 4e-08 PPR repeat family
PPR PF01535 304 - 333 8.6e-07 PPR repeat
PPR_2 PF13041 407 - 450 7.5e-06 PPR repeat family
E_motif PF20431 520 - 582 1.7e-17 E motif
Eplus_motif PF20430 588 - 610 4.1e-07 E+ motif
DYW_deaminase PF14432 618 - 711 2.3e-38 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016373)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g41070
malus_domestica MD09G1122400.v1.1 MD17G1113300.v1.1
prunus_persica Prupe.3G201100_v2.0.a1
pyrus_communis pycom09g04680
rosa_chinensis RchiOBHm_Chr2g0156631
rosa_laevigata RLG00000020926
rosa_multiflora Rmu_co8328357.1_g000001
rosa_roxburghii Rroxscaffold_2G00092890
rosa_rugosa Rorug02G0454800
rosa_samantha Rh2AG520400 Rh2BG533400 Rh2CG505400 Rh2DG542200
rosa_wichuraiana Rw2G042940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1994
Acc36I ACCTGC 2 cut(s) 55, 923
AccBSI CCGCTC 1 cut(s) 297
AccI GTMKAC 1 cut(s) 1446
AciI CCGC 4 cut(s) 295, 373, 762, 1291
AclI AACGTT 1 cut(s) 342
AclWI GGATC 1 cut(s) 41
AcoI YGGCCR 1 cut(s) 1372
AcsI RAATTY 5 cut(s) 640, 811, 919, 941, 984
AcuI CTGAAG 2 cut(s) 65, 216
AfaI GTAC 3 cut(s) 566, 845, 1129
AfiI CCNNNNNNNGG 3 cut(s) 628, 1066, 1158
AflIII ACRYGT 2 cut(s) 1647, 1855
AhdI GACNNNNNGTC 1 cut(s) 873
AjuI GAANNNNNNNTTGG 2 cut(s) 796, 828
AleI CACNNNNGTG 1 cut(s) 1752
AluBI AGCT 8 cut(s) 85, 418, 854, 1055, 1193, 1276, 1913, 1973
AluI AGCT 8 cut(s) 85, 418, 854, 1055, 1193, 1276, 1913, 1973
Alw21I GWGCWC 3 cut(s) 1033, 1552, 1749
Alw26I GTCTC 3 cut(s) 860, 1614, 1961
AlwI GGATC 1 cut(s) 41
Ama87I CYCGRG 2 cut(s) 1283, 1726
AoxI GGCC 2 cut(s) 4, 1372
ApeKI GCWGC 6 cut(s) 71, 187, 1306, 1586, 1655, 1658
ApoI RAATTY 5 cut(s) 640, 811, 919, 941, 984
ArsI GACNNNNNNTTYG 2 cut(s) 345, 377
AseI ATTAAT 2 cut(s) 837, 1962
Asp700I GAANNNNTTC 1 cut(s) 408
AspLEI GCGC 1 cut(s) 464
AspS9I GGNCC 3 cut(s) 4, 21, 1723
AsuC2I CCSGG 2 cut(s) 1727, 1728
AsuHPI GGTGA 4 cut(s) 568, 590, 1586, 1790
AsuII TTCGAA 1 cut(s) 1814
AvaI CYCGRG 2 cut(s) 1283, 1726
AvaII GGWCC 2 cut(s) 21, 1723
BbsI GAAGAC 1 cut(s) 295
Bbv12I GWGCWC 3 cut(s) 1033, 1552, 1749
BbvI GCAGC 6 cut(s) 83, 199, 1318, 1573, 1642, 1645
BccI CCATC 7 cut(s) 100, 647, 740, 769, 1068, 1109, 2100
BceAI ACGGC 4 cut(s) 427, 885, 1025, 1359
BcgI CGANNNNNNTGC 2 cut(s) 1568, 1602
BclI TGATCA 2 cut(s) 700, 1663
BcnI CCSGG 2 cut(s) 1727, 1728
BcoDI GTCTC 3 cut(s) 860, 1614, 1961
BfaI CTAG 2 cut(s) 780, 1008
BfmI CTRYAG 2 cut(s) 1848, 2011
BfuAI ACCTGC 2 cut(s) 55, 923
BisI GCNGC 6 cut(s) 72, 188, 1307, 1587, 1656, 1659
BlsI GCNGC 6 cut(s) 73, 189, 1308, 1588, 1657, 1660
Bme1390I CCNGG 2 cut(s) 1727, 1728
Bme18I GGWCC 2 cut(s) 21, 1723
BmeRI GACNNNNNGTC 1 cut(s) 873
BmeT110I CYCGRG 2 cut(s) 1283, 1726
BmgT120I GGNCC 3 cut(s) 4, 21, 1723
BmiI GGNNCC 2 cut(s) 23, 1725
BmrFI CCNGG 2 cut(s) 1727, 1728
BmsI GCATC 6 cut(s) 373, 789, 882, 1278, 1616, 1721
BpiI GAAGAC 1 cut(s) 295
BpmI CTGGAG 1 cut(s) 876
Bpu14I TTCGAA 1 cut(s) 1814
BpuEI CTTGAG 2 cut(s) 191, 1292
BpuMI CCSGG 2 cut(s) 1727, 1728
BsaI GGTCTC 1 cut(s) 1961
BsaJI CCNNGG 3 cut(s) 26, 1726, 1793
BsaWI WCCGGW 1 cut(s) 212
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bsc4I CCNNNNNNNGG 3 cut(s) 628, 1066, 1158
Bse118I RCCGGY 1 cut(s) 895
Bse1I ACTGG 2 cut(s) 1923, 2046
Bse3DI GCAATG 3 cut(s) 59, 81, 693
BseDI CCNNGG 3 cut(s) 26, 1726, 1793
BseGI GGATG 8 cut(s) 658, 804, 897, 1130, 1480, 1536, 1631, 1736
BseLI CCNNNNNNNGG 3 cut(s) 628, 1066, 1158
BseMI GCAATG 3 cut(s) 59, 81, 693
BseMII CTCAG 3 cut(s) 24, 1052, 1555
BseNI ACTGG 2 cut(s) 1923, 2046
BseRI GAGGAG 3 cut(s) 95, 117, 1725
BseXI GCAGC 6 cut(s) 83, 199, 1318, 1573, 1642, 1645
BseYI CCCAGC 2 cut(s) 523, 1973
Bsh1285I CGRYCG 2 cut(s) 19, 377
BshFI GGCC 2 cut(s) 6, 1374
BsiEI CGRYCG 2 cut(s) 19, 377
BsiHKAI GWGCWC 3 cut(s) 1033, 1552, 1749
BsiHKCI CYCGRG 2 cut(s) 1283, 1726
BsiSI CCGG 4 cut(s) 213, 896, 1356, 1727
BslI CCNNNNNNNGG 3 cut(s) 628, 1066, 1158
BsmAI GTCTC 3 cut(s) 860, 1614, 1961
BsmBI CGTCTC 1 cut(s) 860
BsmI GAATGC 6 cut(s) 478, 832, 1177, 1251, 1308, 1345
BsnI GGCC 2 cut(s) 6, 1374
Bso31I GGTCTC 1 cut(s) 1961
BsoBI CYCGRG 2 cut(s) 1283, 1726
Bsp119I TTCGAA 1 cut(s) 1814
Bsp1286I GDGCHC 3 cut(s) 1033, 1552, 1749
Bsp143I GATC 5 cut(s) 46, 427, 700, 1366, 1663
BspACI CCGC 4 cut(s) 295, 373, 762, 1291
BspANI GGCC 2 cut(s) 6, 1374
BspCNI CTCAG 3 cut(s) 23, 1053, 1554
BspHI TCATGA 2 cut(s) 412, 1762
BspLI GGNNCC 2 cut(s) 23, 1725
BspMI ACCTGC 2 cut(s) 55, 923
BspPI GGATC 1 cut(s) 41
BspT104I TTCGAA 1 cut(s) 1814
BspTNI GGTCTC 1 cut(s) 1961
BsrBI CCGCTC 1 cut(s) 297
BsrDI GCAATG 3 cut(s) 59, 81, 693
BsrFI RCCGGY 1 cut(s) 895
BsrI ACTGG 2 cut(s) 1923, 2046
BssAI RCCGGY 1 cut(s) 895
BssECI CCNNGG 3 cut(s) 26, 1726, 1793
BssMI GATC 5 cut(s) 46, 427, 700, 1366, 1663
BssT1I CCWWGG 1 cut(s) 26
Bst4CI ACNGT 5 cut(s) 17, 439, 736, 1183, 1436
Bst6I CTCTTC 2 cut(s) 1797, 1887
BstBI TTCGAA 1 cut(s) 1814
BstC8I GCNNGC 4 cut(s) 295, 897, 1121, 1465
BstDEI CTNAG 3 cut(s) 10, 1061, 1541
BstENI CCTNNNNNAGG 1 cut(s) 1064
BstF5I GGATG 8 cut(s) 658, 804, 897, 1130, 1480, 1536, 1631, 1736
BstHHI GCGC 1 cut(s) 464
BstKTI GATC 5 cut(s) 49, 430, 703, 1369, 1666
BstMAI GTCTC 3 cut(s) 860, 1614, 1961
BstMBI GATC 5 cut(s) 46, 427, 700, 1366, 1663
BstMCI CGRYCG 2 cut(s) 19, 377
BstMWI GCNNNNNNNGC 1 cut(s) 1037
BstNSI RCATGY 4 cut(s) 165, 1347, 1651, 1859
BstSCI CCNGG 2 cut(s) 1725, 1726
BstSFI CTRYAG 2 cut(s) 1848, 2011
BstV1I GCAGC 6 cut(s) 83, 199, 1318, 1573, 1642, 1645
BstV2I GAAGAC 1 cut(s) 295
BsuRI GGCC 2 cut(s) 6, 1374
BtsCI GGATG 8 cut(s) 658, 804, 897, 1130, 1480, 1536, 1631, 1736
BtsIMutI CAGTG 4 cut(s) 435, 1033, 1549, 1673
BveI ACCTGC 2 cut(s) 55, 923
Cac8I GCNNGC 4 cut(s) 295, 897, 1121, 1465
CciI TCATGA 2 cut(s) 412, 1762
CfoI GCGC 1 cut(s) 464
Cfr10I RCCGGY 1 cut(s) 895
Cfr13I GGNCC 3 cut(s) 4, 21, 1723
Cfr9I CCCGGG 1 cut(s) 1726
Csp6I GTAC 3 cut(s) 565, 844, 1128
CviQI GTAC 3 cut(s) 565, 844, 1128
DdeI CTNAG 3 cut(s) 10, 1061, 1541
DpnI GATC 5 cut(s) 48, 429, 702, 1368, 1665
DpnII GATC 5 cut(s) 46, 427, 700, 1366, 1663
DriI GACNNNNNGTC 1 cut(s) 873
EaeI YGGCCR 1 cut(s) 1372
Eam1104I CTCTTC 2 cut(s) 1797, 1887
Eam1105I GACNNNNNGTC 1 cut(s) 873
EarI CTCTTC 2 cut(s) 1797, 1887
Eco130I CCWWGG 1 cut(s) 26
Eco31I GGTCTC 1 cut(s) 1961
Eco47I GGWCC 2 cut(s) 21, 1723
Eco57I CTGAAG 2 cut(s) 65, 216
Eco88I CYCGRG 2 cut(s) 1283, 1726
EcoNI CCTNNNNNAGG 1 cut(s) 1064
EcoO109I RGGNCCY 1 cut(s) 1723
EcoRI GAATTC 2 cut(s) 640, 919
EcoT14I CCWWGG 1 cut(s) 26
EcoT22I ATGCAT 2 cut(s) 1251, 1345
ErhI CCWWGG 1 cut(s) 26
Esp3I CGTCTC 1 cut(s) 860
FauI CCCGC 2 cut(s) 302, 755
FbaI TGATCA 2 cut(s) 700, 1663
FblI GTMKAC 1 cut(s) 1446
Fnu4HI GCNGC 6 cut(s) 72, 188, 1307, 1587, 1656, 1659
FokI GGATG 8 cut(s) 665, 811, 904, 1117, 1487, 1543, 1638, 1743
Fsp4HI GCNGC 6 cut(s) 72, 188, 1307, 1587, 1656, 1659
FspBI CTAG 2 cut(s) 780, 1008
GlaI GCGC 1 cut(s) 463
GluI GCNGC 6 cut(s) 72, 188, 1307, 1587, 1656, 1659
GsaI CCCAGC 2 cut(s) 527, 1977
GsuI CTGGAG 1 cut(s) 876
HaeIII GGCC 2 cut(s) 6, 1374
HapII CCGG 4 cut(s) 213, 896, 1356, 1727
HhaI GCGC 1 cut(s) 464
Hin6I GCGC 1 cut(s) 462
HinP1I GCGC 1 cut(s) 462
HinfI GANTC 7 cut(s) 496, 1078, 1332, 1555, 1713, 1978, 1999
HpaII CCGG 4 cut(s) 213, 896, 1356, 1727
HphI GGTGA 4 cut(s) 568, 590, 1586, 1790
Hpy166II GTNNAC 1 cut(s) 1447
Hpy8I GTNNAC 1 cut(s) 1447
Hpy99I CGWCG 1 cut(s) 365
HpyAV CCTTC 6 cut(s) 154, 240, 479, 592, 760, 1900
HpyCH4III ACNGT 5 cut(s) 17, 439, 736, 1183, 1436
HpyCH4IV ACGT 2 cut(s) 342, 360
HpyF10VI GCNNNNNNNGC 1 cut(s) 1037
HpyF3I CTNAG 3 cut(s) 10, 1061, 1541
HpySE526I ACGT 2 cut(s) 342, 360
HspAI GCGC 1 cut(s) 462
KroI GCCGGC 1 cut(s) 895
KroNI GCCGGC 1 cut(s) 897
Ksp22I TGATCA 2 cut(s) 700, 1663
Kzo9I GATC 5 cut(s) 46, 427, 700, 1366, 1663
LmnI GCTCC 2 cut(s) 302, 1161
Lsp1109I GCAGC 6 cut(s) 83, 199, 1318, 1573, 1642, 1645
LweI GCATC 6 cut(s) 373, 789, 882, 1278, 1616, 1721
MaeI CTAG 2 cut(s) 780, 1008
MaeII ACGT 2 cut(s) 342, 360
MaeIII GTNAC 4 cut(s) 617, 631, 1592, 2029
MalI GATC 5 cut(s) 48, 429, 702, 1368, 1665
MbiI CCGCTC 1 cut(s) 297
MboI GATC 5 cut(s) 46, 427, 700, 1366, 1663
MboII GAAGA 8 cut(s) 295, 1007, 1216, 1306, 1495, 1814, 1904, 1994
MfeI CAATTG 1 cut(s) 1422
MhlI GDGCHC 3 cut(s) 1033, 1552, 1749
MlyI GAGTC 3 cut(s) 1341, 1722, 1987
MmeI TCCRAC 2 cut(s) 343, 510
Mph1103I ATGCAT 2 cut(s) 1251, 1345
MroNI GCCGGC 1 cut(s) 895
MroXI GAANNNNTTC 1 cut(s) 408
MseI TTAA 4 cut(s) 453, 837, 945, 1962
MslI CAYNNNNRTG 2 cut(s) 1563, 1752
MspA1I CMGCKG 1 cut(s) 373
MspI CCGG 4 cut(s) 213, 896, 1356, 1727
MspR9I CCNGG 2 cut(s) 1727, 1728
MunI CAATTG 1 cut(s) 1422
Mva1269I GAATGC 6 cut(s) 478, 832, 1177, 1251, 1308, 1345
MwoI GCNNNNNNNGC 1 cut(s) 1037
NaeI GCCGGC 1 cut(s) 897
NciI CCSGG 2 cut(s) 1727, 1728
NdeII GATC 5 cut(s) 46, 427, 700, 1366, 1663
NgoMIV GCCGGC 1 cut(s) 895
NlaIV GGNNCC 2 cut(s) 23, 1725
NmuCI GTSAC 3 cut(s) 617, 1592, 2029
NsiI ATGCAT 2 cut(s) 1251, 1345
NspI RCATGY 4 cut(s) 165, 1347, 1651, 1859
NspV TTCGAA 1 cut(s) 1814
OliI CACNNNNGTG 1 cut(s) 1752
PaeR7I CTCGAG 1 cut(s) 1283
PagI TCATGA 2 cut(s) 412, 1762
PciI ACATGT 2 cut(s) 1647, 1855
PcsI WCGNNNNNNNCGW 2 cut(s) 297, 312
PctI GAATGC 6 cut(s) 478, 832, 1177, 1251, 1308, 1345
PdiI GCCGGC 1 cut(s) 897
PdmI GAANNNNTTC 1 cut(s) 408
PfeI GAWTC 4 cut(s) 496, 1078, 1555, 1999
PkrI GCNGC 6 cut(s) 73, 189, 1308, 1588, 1657, 1660
PleI GAGTC 3 cut(s) 1340, 1721, 1986
PpsI GAGTC 3 cut(s) 1340, 1721, 1986
PpuMI RGGWCCY 1 cut(s) 1723
PscI ACATGT 2 cut(s) 1647, 1855
PshBI ATTAAT 2 cut(s) 837, 1962
PsiI TTATAA 1 cut(s) 1994
Psp1406I AACGTT 1 cut(s) 342
Psp5II RGGWCCY 1 cut(s) 1723
PspFI CCCAGC 2 cut(s) 523, 1973
PspN4I GGNNCC 2 cut(s) 23, 1725
PspPI GGNCC 3 cut(s) 4, 21, 1723
PspPPI RGGWCCY 1 cut(s) 1723
PsrI GAACNNNNNNTAC 2 cut(s) 1842, 1874
RsaI GTAC 3 cut(s) 566, 845, 1129
RsaNI GTAC 3 cut(s) 565, 844, 1128
RseI CAYNNNNRTG 2 cut(s) 1563, 1752
SaqAI TTAA 4 cut(s) 453, 837, 945, 1962
SatI GCNGC 6 cut(s) 72, 188, 1307, 1587, 1656, 1659
Sau3AI GATC 5 cut(s) 46, 427, 700, 1366, 1663
Sau96I GGNCC 3 cut(s) 4, 21, 1723
SchI GAGTC 3 cut(s) 1341, 1722, 1987
ScrFI CCNGG 2 cut(s) 1727, 1728
SduI GDGCHC 3 cut(s) 1033, 1552, 1749
SfaNI GCATC 6 cut(s) 373, 789, 882, 1278, 1616, 1721
SfcI CTRYAG 2 cut(s) 1848, 2011
Sfr274I CTCGAG 1 cut(s) 1283
SfuI TTCGAA 1 cut(s) 1814
SinI GGWCC 2 cut(s) 21, 1723
SlaI CTCGAG 1 cut(s) 1283
SmaI CCCGGG 1 cut(s) 1728
SmiMI CAYNNNNRTG 2 cut(s) 1563, 1752
SmlI CTYRAG 3 cut(s) 206, 1271, 1283
SmoI CTYRAG 3 cut(s) 206, 1271, 1283
SsiI CCGC 4 cut(s) 295, 373, 762, 1291
SspMI CTAG 2 cut(s) 780, 1008
StyD4I CCNGG 2 cut(s) 1725, 1726
StyI CCWWGG 1 cut(s) 26
TaaI ACNGT 5 cut(s) 17, 439, 736, 1183, 1436
TaiI ACGT 2 cut(s) 345, 363
TaqII GACCGA 1 cut(s) 636
TatI WGTACW 1 cut(s) 564
TfiI GAWTC 4 cut(s) 496, 1078, 1555, 1999
Tru1I TTAA 4 cut(s) 453, 837, 945, 1962
Tru9I TTAA 4 cut(s) 453, 837, 945, 1962
TscAI CASTG 4 cut(s) 442, 1033, 1549, 1673
TseFI GTSAC 3 cut(s) 617, 1592, 2029
TseI GCWGC 6 cut(s) 71, 187, 1306, 1586, 1655, 1658
Tsp45I GTSAC 3 cut(s) 617, 1592, 2029
TspGWI ACGGA 1 cut(s) 289
TspMI CCCGGG 1 cut(s) 1726
TspRI CASTG 4 cut(s) 442, 1033, 1549, 1673
VpaK11BI GGWCC 2 cut(s) 21, 1723
VspI ATTAAT 2 cut(s) 837, 1962
XagI CCTNNNNNAGG 1 cut(s) 1064
XapI RAATTY 5 cut(s) 640, 811, 919, 941, 984
XceI RCATGY 4 cut(s) 165, 1347, 1651, 1859
XhoI CTCGAG 1 cut(s) 1283
XmaI CCCGGG 1 cut(s) 1726
XmiI GTMKAC 1 cut(s) 1446
XmnI GAANNNNTTC 1 cut(s) 408
XspI CTAG 2 cut(s) 780, 1008
Zsp2I ATGCAT 2 cut(s) 1251, 1345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.