RchiOBHm_Chr2g0156631

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0016373
Physical Location & Seq
Reverse (-)
73214606 .. 73217760
3155 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52541

Sequence Viewer

Length: 2061 bp
ATGCTGCAGCTCACACCCTCTCACTTCCTCCCTCCACCACCACCACCACTCTCTCCCCAAAACCTCTCCTTTTCTCTCCTCCAGAGCTGCAAAACCCTACAAGAAGCAACCCAGCTCCACGCCCTGTCCCTCAAGACTGGAGCTTTCACCAACCCTTTAATCGCTTCCCGCCTCTTCTCTCTCTACGCCGACCCCAAAATCAACCACCTCACCTACGCCCGCTCCGTCTTCACCCAAATCCAAGACCCCAACTTGGTCTCCTGGAACGTCCTCATCAAATCCCACGTCACCAACCAACGCTCCCACGACGCCGTCGTTTTGTTCCGCGACTTGGTCCGCCACCACGCGCCGGATAACTTCACGTTGCCGTGTGTGATCAAGGGCTGTGCGAGGCTGAATGCGGTGGAGGAAGGGAGGCAGATTCACGGGCTGGGCTTGAAAATTGGGCTGGGATTGGATAAGTTTGTGCAGAGCAGCTTGGTGAGTATGTACTCCAAATGTGGAGAGATTGAGTTTGCGCGCAAGGTGTTCGATGAAATGCGTGAGAGGGATTTGGTGGCGTGGAATTCTTTGATTGATGGGTACGCTAGATGTGGGAGAGTTGATGTTGCGGTGGAGTTGTTTGATCAGATGGAGGAGAGGGATTCGTTTTCGTGGACGGTTTTGGTTGATGGCTTGTCGAAATGTGGGAATGTAGAGAAGGCTAGGGAGGTTTTTGATAGGATGCCGGATAAAAATTTGGTTTCCTGGAATGCCATGATCAATGGGTACATGAAAGCTAGGGACTTTGAGACGGCGAGGGAGTTGTTTAGTCAGATGTTGACTAGAGATGTGATAACATGGAATTCGATGATTGCTGGTTATGAGTTTAATGGGAGGTTTGCGGAAGCGTTGGAGTTGTTTCGAGAGATTTTGGAAGAGGATCTTAGGCCTACTCCTGCTACATTGGTCAGTGTGCTTTCTGCTGTTTCGGGATTAGCCGCTTTAAGTAAGGGGAGATTGGTTCATTGTGTGATGGTGAAACATGGGTTTGAATTGGATGGTGTGCTTGGTACGTCATTAATAGAAATGTATTATAAGTGTGGAAGCATTGACAGTGCAATGGCTGTGTTTCGAGGTATACAGAGGAAGAAAGTGGGGCATTGGACGGCTATAATTGTTGGTTTAGGAATGCATGGTATGGCTGACCAGGTTCTTCAGCTGTTTCTGGAAATGCGCAAAAATGGGATGGAGCCTCATGCTATAACTTTTGTTGGAATCTTGAATGCATGTAGCCATGCTGGATTGGTCGATCTTGGACGTTACTATTTCAATATGATGATAAAGGATTATGGAATTGAACCCACAATTGAGCACTATGGTTGCTTTGTAGACATTTTATGTCGAGCTGGCTGTTTGGACGAGGCAAAGAATGTCATTGGGAGTATGCCAATGAAACCAAACAAAGTTATTTGGATGAGTTTACTTAGCGGTGCCCGGATCCATGGAAATGTTGAAATTGGTGATTATGCAGCTCAACATTTGATAGAGGTGTCTCCAGATACTATTGGATGCTACGTTGTGCTCTCTAACATGTATGCTGCAGCTGATCAGTGGGAGAAAGTTTCACAGGTAAGAGAAATGATGAAAAAGAGAGGTGTCAAAAAGGACCCAGGATGCAGTACCATAGAGCACAGAGGTATGCTTCATGAGTTTATTGTCGGTGACAAATCCCATCCTCAGACAAAAGAGATATATTCCAAGTTGAGTGAGGTGAGAGAGAAACTAAAATCTGCAGGACATGTTCCTGACACAAGCCAAGTTTTATTGTGTCTTGAGGATGAAAAGGAGAAGGAAGCTGAACTGGAAAACCATAGTGAGAGATTGGCCATTGCATTTGGTCTAATTAATTTGGAACCTAGGAGTCCTATTCGCATCATAAAGAATCTTCGTGTCTGTAATGATTGCCATTCTGTCACTAAACTCCTTTCCAAGATCTATAATCGTGAGATTGTTGTCAGAGATAATAGCCGTTTCCATCACTTCGCCAATGGGTCATGTTCTTGCAAAGATTTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR

Protein Analysis

686

Amino Acids

77.2

Weight (kDa)

6.94

Isoelectric Point (pI)

34.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 83 - 131 9.6e-07 PPR repeat family
PPR_1 PF12854 183 - 212 1.8e-09 PPR repeat
PPR_2 PF13041 184 - 214 6.6e-08 PPR repeat family
PPR PF01535 186 - 214 4.7e-09 PPR repeat
PPR PF01535 217 - 246 4.1e-07 PPR repeat
PPR_2 PF13041 246 - 277 3.2e-07 PPR repeat family
PPR PF01535 248 - 277 1.3e-07 PPR repeat
PPR_2 PF13041 276 - 322 9.6e-08 PPR repeat family
PPR PF01535 279 - 308 1.1e-06 PPR repeat
PPR_2 PF13041 379 - 425 1.3e-06 PPR repeat family
E_motif PF20431 495 - 557 3.7e-20 E motif
Eplus_motif PF20430 563 - 586 4.2e-09 E+ motif
DYW_deaminase PF14432 593 - 686 5.3e-38 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016373)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g41070
malus_domestica MD09G1122400.v1.1 MD17G1113300.v1.1
prunus_persica Prupe.3G201100_v2.0.a1
pyrus_communis pycom09g04680
rosa_chinensis RchiOBHm_Chr2g0156631
rosa_laevigata RLG00000020926
rosa_multiflora Rmu_co8328357.1_g000001
rosa_roxburghii Rroxscaffold_2G00092890
rosa_rugosa Rorug02G0454800
rosa_samantha Rh2AG520400 Rh2BG533400 Rh2CG505400 Rh2DG542200
rosa_wichuraiana Rw2G042940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1077
Acc16I TGCGCA 1 cut(s) 1217
AccB1I GGYRCC 1 cut(s) 1472
AccBSI CCGCTC 1 cut(s) 222
AccI GTMKAC 2 cut(s) 1120, 1371
AccII CGCG 3 cut(s) 327, 347, 520
AciI CCGC 9 cut(s) 169, 220, 325, 337, 401, 611, 884, 981, 1470
AclWI GGATC 3 cut(s) 930, 1474, 1487
AcoI YGGCCR 1 cut(s) 1866
AcsI RAATTY 3 cut(s) 565, 736, 844
AcuI CTGAAG 1 cut(s) 1181
AcyI GRCGYC 1 cut(s) 309
AfaI GTAC 5 cut(s) 491, 584, 770, 1054, 1663
AfiI CCNNNNNNNGG 3 cut(s) 253, 331, 349
AflIII ACRYGT 2 cut(s) 1572, 1780
AgsI TTSAA 6 cut(s) 439, 1034, 1264, 1312, 1340, 1496
AjiI CACGTC 1 cut(s) 286
AjnI CCWGG 4 cut(s) 260, 746, 1188, 1651
Alw21I GWGCWC 3 cut(s) 1356, 1566, 1674
Alw26I GTCTC 3 cut(s) 262, 785, 1539
AlwI GGATC 3 cut(s) 930, 1474, 1487
AoxI GGCC 2 cut(s) 929, 1866
ApeKI GCWGC 7 cut(s) 4, 7, 87, 474, 1511, 1580, 1583
ApoI RAATTY 3 cut(s) 565, 736, 844
ArsI GACNNNNNNTTYG 2 cut(s) 270, 302
AseI ATTAAT 2 cut(s) 1061, 1887
AspA2I CCTAGG 1 cut(s) 1898
AspLEI GCGC 4 cut(s) 349, 520, 522, 1218
AspS9I GGNCC 2 cut(s) 334, 1648
AsuC2I CCSGG 1 cut(s) 1477
AsuHPI GGTGA 9 cut(s) 139, 202, 223, 280, 493, 1030, 1514, 1715, 1765
AvaII GGWCC 2 cut(s) 334, 1648
AvrII CCTAGG 1 cut(s) 1898
BaeGI GKGCMC 1 cut(s) 1477
BalI TGGCCA 1 cut(s) 1868
BamHI GGATCC 1 cut(s) 1479
BanI GGYRCC 1 cut(s) 1472
BbsI GAAGAC 1 cut(s) 220
Bbv12I GWGCWC 3 cut(s) 1356, 1566, 1674
BbvI GCAGC 6 cut(s) 19, 74, 486, 1523, 1567, 1595
BccI CCATC 8 cut(s) 572, 625, 665, 1009, 1034, 1222, 1722, 2025
BceAI ACGGC 5 cut(s) 296, 352, 810, 1164, 1995
BcgI CGANNNNNNTGC 2 cut(s) 511, 545
BciT130I CCWGG 4 cut(s) 262, 748, 1190, 1653
BclI TGATCA 4 cut(s) 375, 625, 759, 1588
BcnI CCSGG 1 cut(s) 1477
BcoDI GTCTC 3 cut(s) 262, 785, 1539
BfaI CTAG 5 cut(s) 588, 705, 780, 825, 1899
BfmI CTRYAG 3 cut(s) 5, 1581, 1773
BglII AGATCT 1 cut(s) 1974
BisI GCNGC 8 cut(s) 5, 8, 88, 475, 981, 1512, 1581, 1584
BlnI CCTAGG 1 cut(s) 1898
BlsI GCNGC 8 cut(s) 6, 9, 89, 476, 982, 1513, 1582, 1585
Bme1390I CCNGG 5 cut(s) 262, 748, 1190, 1477, 1653
Bme18I GGWCC 2 cut(s) 334, 1648
BmgBI CACGTC 1 cut(s) 286
BmgT120I GGNCC 2 cut(s) 334, 1648
BmiI GGNNCC 5 cut(s) 1233, 1474, 1481, 1650, 1896
BmrFI CCNGG 5 cut(s) 262, 748, 1190, 1477, 1653
BmsI GCATC 4 cut(s) 714, 1541, 1646, 1923
BpiI GAAGAC 1 cut(s) 220
BpmI CTGGAG 3 cut(s) 65, 159, 1521
BpuEI CTTGAG 2 cut(s) 116, 1835
BpuMI CCSGG 1 cut(s) 1477
BsaHI GRCGYC 1 cut(s) 309
BsaI GGTCTC 1 cut(s) 262
BsaJI CCNNGG 3 cut(s) 1483, 1651, 1898
BsaXI ACNNNNNCTCC 6 cut(s) 206, 236, 242, 272, 284, 314
Bsc4I CCNNNNNNNGG 3 cut(s) 253, 331, 349
Bse1I ACTGG 2 cut(s) 142, 1848
Bse3DI GCAATG 2 cut(s) 1107, 1869
BseBI CCWGG 4 cut(s) 262, 748, 1190, 1653
BseDI CCNNGG 3 cut(s) 1483, 1651, 1898
BseGI GGATG 8 cut(s) 729, 1045, 1233, 1461, 1556, 1661, 1714, 1825
BseLI CCNNNNNNNGG 3 cut(s) 253, 331, 349
BseMI GCAATG 2 cut(s) 1107, 1869
BseMII CTCAG 1 cut(s) 1733
BseNI ACTGG 2 cut(s) 142, 1848
BsePI GCGCGC 1 cut(s) 518
BseRI GAGGAG 2 cut(s) 68, 650
BseSI GKGCMC 1 cut(s) 1477
BseXI GCAGC 6 cut(s) 19, 74, 486, 1523, 1567, 1595
BseYI CCCAGC 3 cut(s) 111, 430, 448
BsgI GTGCAG 1 cut(s) 488
Bsh1236I CGCG 3 cut(s) 327, 347, 520
BshFI GGCC 2 cut(s) 931, 1868
BshNI GGYRCC 1 cut(s) 1472
BsiHKAI GWGCWC 3 cut(s) 1356, 1566, 1674
BsiSI CCGG 3 cut(s) 350, 728, 1477
BslFI GGGAC 2 cut(s) 112, 797
BslI CCNNNNNNNGG 3 cut(s) 253, 331, 349
BsmAI GTCTC 3 cut(s) 262, 785, 1539
BsmBI CGTCTC 1 cut(s) 785
BsmFI GGGAC 2 cut(s) 112, 797
BsmI GAATGC 4 cut(s) 403, 757, 1176, 1270
BsnI GGCC 2 cut(s) 931, 1868
Bso31I GGTCTC 1 cut(s) 262
Bsp1286I GDGCHC 4 cut(s) 1356, 1477, 1566, 1674
Bsp143I GATC 8 cut(s) 375, 625, 759, 922, 1291, 1479, 1588, 1974
Bsp19I CCATGG 1 cut(s) 1483
BspACI CCGC 9 cut(s) 169, 220, 325, 337, 401, 611, 884, 981, 1470
BspANI GGCC 2 cut(s) 931, 1868
BspCNI CTCAG 1 cut(s) 1732
BspFNI CGCG 3 cut(s) 327, 347, 520
BspHI TCATGA 1 cut(s) 1687
BspLI GGNNCC 5 cut(s) 1233, 1474, 1481, 1650, 1896
BspMAI CTGCAG 3 cut(s) 9, 1585, 1777
BspPI GGATC 3 cut(s) 930, 1474, 1487
BspT107I GGYRCC 1 cut(s) 1472
BspTNI GGTCTC 1 cut(s) 262
BsrBI CCGCTC 1 cut(s) 222
BsrDI GCAATG 2 cut(s) 1107, 1869
BsrI ACTGG 2 cut(s) 142, 1848
BssECI CCNNGG 3 cut(s) 1483, 1651, 1898
BssHII GCGCGC 1 cut(s) 518
BssMI GATC 8 cut(s) 375, 625, 759, 922, 1291, 1479, 1588, 1974
BssNAI GTATAC 1 cut(s) 1121
BssNI GRCGYC 1 cut(s) 309
BssT1I CCWWGG 2 cut(s) 1483, 1898
Bst1107I GTATAC 1 cut(s) 1121
Bst2UI CCWGG 4 cut(s) 262, 748, 1190, 1653
Bst4CI ACNGT 2 cut(s) 661, 1097
Bst6I CTCTTC 2 cut(s) 179, 912
BstACI GRCGYC 1 cut(s) 309
BstC8I GCNNGC 3 cut(s) 220, 520, 1390
BstDEI CTNAG 3 cut(s) 926, 1466, 1719
BstDSI CCRYGG 1 cut(s) 1483
BstF5I GGATG 8 cut(s) 729, 1045, 1233, 1461, 1556, 1661, 1714, 1825
BstFNI CGCG 3 cut(s) 327, 347, 520
BstHHI GCGC 4 cut(s) 349, 520, 522, 1218
BstKTI GATC 8 cut(s) 378, 628, 762, 925, 1294, 1482, 1591, 1977
BstMAI GTCTC 3 cut(s) 262, 785, 1539
BstMBI GATC 8 cut(s) 375, 625, 759, 922, 1291, 1479, 1588, 1974
BstNI CCWGG 4 cut(s) 262, 748, 1190, 1653
BstNSI RCATGY 3 cut(s) 1272, 1576, 1784
BstSCI CCNGG 5 cut(s) 260, 746, 1188, 1475, 1651
BstSFI CTRYAG 3 cut(s) 5, 1581, 1773
BstSLI GKGCMC 1 cut(s) 1477
BstUI CGCG 3 cut(s) 327, 347, 520
BstV1I GCAGC 6 cut(s) 19, 74, 486, 1523, 1567, 1595
BstV2I GAAGAC 1 cut(s) 220
BstX2I RGATCY 3 cut(s) 922, 1479, 1974
BstYI RGATCY 3 cut(s) 922, 1479, 1974
BstZ17I GTATAC 1 cut(s) 1121
BsuRI GGCC 2 cut(s) 931, 1868
BtgI CCRYGG 1 cut(s) 1483
BtrI CACGTC 1 cut(s) 286
BtsCI GGATG 8 cut(s) 729, 1045, 1233, 1461, 1556, 1661, 1714, 1825
BtsIMutI CAGTG 3 cut(s) 958, 1102, 1598
Cac8I GCNNGC 3 cut(s) 220, 520, 1390
CciI TCATGA 1 cut(s) 1687
CfoI GCGC 4 cut(s) 349, 520, 522, 1218
Cfr13I GGNCC 2 cut(s) 334, 1648
CseI GACGC 1 cut(s) 317
CsiI ACCWGGT 1 cut(s) 1188
Csp6I GTAC 5 cut(s) 490, 583, 769, 1053, 1662
CviQI GTAC 5 cut(s) 490, 583, 769, 1053, 1662
DdeI CTNAG 3 cut(s) 926, 1466, 1719
DpnI GATC 8 cut(s) 377, 627, 761, 924, 1293, 1481, 1590, 1976
DpnII GATC 8 cut(s) 375, 625, 759, 922, 1291, 1479, 1588, 1974
EaeI YGGCCR 1 cut(s) 1866
Eam1104I CTCTTC 2 cut(s) 179, 912
EarI CTCTTC 2 cut(s) 179, 912
EciI GGCGGA 1 cut(s) 326
Eco130I CCWWGG 2 cut(s) 1483, 1898
Eco147I AGGCCT 1 cut(s) 931
Eco31I GGTCTC 1 cut(s) 262
Eco47I GGWCC 2 cut(s) 334, 1648
Eco57I CTGAAG 1 cut(s) 1181
EcoO109I RGGNCCY 1 cut(s) 1648
EcoRI GAATTC 2 cut(s) 565, 844
EcoRII CCWGG 4 cut(s) 260, 746, 1188, 1651
EcoT14I CCWWGG 2 cut(s) 1483, 1898
EcoT22I ATGCAT 2 cut(s) 1176, 1270
ErhI CCWWGG 2 cut(s) 1483, 1898
Esp3I CGTCTC 1 cut(s) 785
FalI AAGNNNNNCTT 2 cut(s) 909, 941
FaqI GGGAC 2 cut(s) 112, 797
FauI CCCGC 2 cut(s) 176, 227
FbaI TGATCA 4 cut(s) 375, 625, 759, 1588
FblI GTMKAC 2 cut(s) 1120, 1371
Fnu4HI GCNGC 8 cut(s) 5, 8, 88, 475, 981, 1512, 1581, 1584
FokI GGATG 8 cut(s) 736, 1052, 1240, 1468, 1563, 1668, 1701, 1832
Fsp4HI GCNGC 8 cut(s) 5, 8, 88, 475, 981, 1512, 1581, 1584
FspBI CTAG 5 cut(s) 588, 705, 780, 825, 1899
FspI TGCGCA 1 cut(s) 1217
GlaI GCGC 4 cut(s) 348, 519, 521, 1217
GluI GCNGC 8 cut(s) 5, 8, 88, 475, 981, 1512, 1581, 1584
GsaI CCCAGC 3 cut(s) 115, 434, 452
GsuI CTGGAG 3 cut(s) 65, 159, 1521
HaeIII GGCC 2 cut(s) 931, 1868
HapII CCGG 3 cut(s) 350, 728, 1477
HgaI GACGC 1 cut(s) 317
HhaI GCGC 4 cut(s) 349, 520, 522, 1218
Hin1I GRCGYC 1 cut(s) 309
Hin6I GCGC 4 cut(s) 347, 518, 520, 1216
HinP1I GCGC 4 cut(s) 347, 518, 520, 1216
HincII GTYRAC 1 cut(s) 822
HindII GTYRAC 1 cut(s) 822
HinfI GANTC 5 cut(s) 421, 644, 1257, 1903, 1924
HpaII CCGG 3 cut(s) 350, 728, 1477
HphI GGTGA 9 cut(s) 139, 202, 223, 280, 493, 1030, 1514, 1715, 1765
Hpy166II GTNNAC 5 cut(s) 657, 822, 1121, 1372, 1463
Hpy188I TCNGA 4 cut(s) 630, 816, 1722, 2000
Hpy8I GTNNAC 5 cut(s) 657, 822, 1121, 1372, 1463
Hpy99I CGWCG 2 cut(s) 311, 317
HpyAV CCTTC 3 cut(s) 404, 694, 1825
HpyCH4III ACNGT 2 cut(s) 661, 1097
HpyCH4IV ACGT 6 cut(s) 267, 285, 362, 1055, 1300, 1557
HpyF3I CTNAG 3 cut(s) 926, 1466, 1719
HpySE526I ACGT 6 cut(s) 267, 285, 362, 1055, 1300, 1557
Hsp92I GRCGYC 1 cut(s) 309
HspAI GCGC 4 cut(s) 347, 518, 520, 1216
Ksp22I TGATCA 4 cut(s) 375, 625, 759, 1588
Kzo9I GATC 8 cut(s) 375, 625, 759, 922, 1291, 1479, 1588, 1974
LmnI GCTCC 5 cut(s) 120, 140, 227, 305, 1231
Lsp1109I GCAGC 6 cut(s) 19, 74, 486, 1523, 1567, 1595
LweI GCATC 4 cut(s) 714, 1541, 1646, 1923
MabI ACCWGGT 1 cut(s) 1188
MaeI CTAG 5 cut(s) 588, 705, 780, 825, 1899
MaeII ACGT 6 cut(s) 267, 285, 362, 1055, 1300, 1557
MaeIII GTNAC 4 cut(s) 286, 1301, 1703, 1954
MalI GATC 8 cut(s) 377, 627, 761, 924, 1293, 1481, 1590, 1976
MbiI CCGCTC 1 cut(s) 222
MboI GATC 8 cut(s) 375, 625, 759, 922, 1291, 1479, 1588, 1974
MboII GAAGA 6 cut(s) 166, 220, 929, 1141, 1187, 1919
MfeI CAATTG 1 cut(s) 1347
MflI RGATCY 3 cut(s) 922, 1479, 1974
MhlI GDGCHC 4 cut(s) 1356, 1477, 1566, 1674
MlsI TGGCCA 1 cut(s) 1868
MluNI TGGCCA 1 cut(s) 1868
MlyI GAGTC 1 cut(s) 1912
MmeI TCCRAC 2 cut(s) 873, 1234
Mox20I TGGCCA 1 cut(s) 1868
Mph1103I ATGCAT 2 cut(s) 1176, 1270
MscI TGGCCA 1 cut(s) 1868
MseI TTAA 5 cut(s) 158, 870, 986, 1061, 1887
MslI CAYNNNNRTG 1 cut(s) 1488
Msp20I TGGCCA 1 cut(s) 1868
MspA1I CMGCKG 2 cut(s) 1201, 1586
MspI CCGG 3 cut(s) 350, 728, 1477
MspR9I CCNGG 5 cut(s) 262, 748, 1190, 1477, 1653
MunI CAATTG 1 cut(s) 1347
Mva1269I GAATGC 4 cut(s) 403, 757, 1176, 1270
MvaI CCWGG 4 cut(s) 262, 748, 1190, 1653
MvnI CGCG 3 cut(s) 327, 347, 520
NciI CCSGG 1 cut(s) 1477
NcoI CCATGG 1 cut(s) 1483
NdeII GATC 8 cut(s) 375, 625, 759, 922, 1291, 1479, 1588, 1974
NlaIV GGNNCC 5 cut(s) 1233, 1474, 1481, 1650, 1896
NmuCI GTSAC 3 cut(s) 286, 1703, 1954
NsbI TGCGCA 1 cut(s) 1217
NsiI ATGCAT 2 cut(s) 1176, 1270
NspI RCATGY 3 cut(s) 1272, 1576, 1784
PagI TCATGA 1 cut(s) 1687
PauI GCGCGC 1 cut(s) 518
PceI AGGCCT 1 cut(s) 931
PciI ACATGT 2 cut(s) 1572, 1780
PcsI WCGNNNNNNNCGW 2 cut(s) 222, 312
PctI GAATGC 4 cut(s) 403, 757, 1176, 1270
PfeI GAWTC 4 cut(s) 421, 644, 1257, 1924
PflFI GACNNNGTC 2 cut(s) 311, 332
PfoI TCCNGGA 2 cut(s) 260, 746
PkrI GCNGC 8 cut(s) 6, 9, 89, 476, 982, 1513, 1582, 1585
PleI GAGTC 1 cut(s) 1911
PpsI GAGTC 1 cut(s) 1911
PpuMI RGGWCCY 1 cut(s) 1648
PscI ACATGT 2 cut(s) 1572, 1780
PshBI ATTAAT 2 cut(s) 1061, 1887
PsiI TTATAA 1 cut(s) 1077
Psp5II RGGWCCY 1 cut(s) 1648
Psp6I CCWGG 4 cut(s) 260, 746, 1188, 1651
PspFI CCCAGC 3 cut(s) 111, 430, 448
PspGI CCWGG 4 cut(s) 260, 746, 1188, 1651
PspN4I GGNNCC 5 cut(s) 1233, 1474, 1481, 1650, 1896
PspPI GGNCC 2 cut(s) 334, 1648
PspPPI RGGWCCY 1 cut(s) 1648
PstI CTGCAG 3 cut(s) 9, 1585, 1777
PsuI RGATCY 3 cut(s) 922, 1479, 1974
PsyI GACNNNGTC 2 cut(s) 311, 332
PteI GCGCGC 1 cut(s) 518
PvuII CAGCTG 2 cut(s) 1201, 1586
RsaI GTAC 5 cut(s) 491, 584, 770, 1054, 1663
RsaNI GTAC 5 cut(s) 490, 583, 769, 1053, 1662
RseI CAYNNNNRTG 1 cut(s) 1488
SaqAI TTAA 5 cut(s) 158, 870, 986, 1061, 1887
SatI GCNGC 8 cut(s) 5, 8, 88, 475, 981, 1512, 1581, 1584
Sau3AI GATC 8 cut(s) 375, 625, 759, 922, 1291, 1479, 1588, 1974
Sau96I GGNCC 2 cut(s) 334, 1648
SchI GAGTC 1 cut(s) 1912
ScrFI CCNGG 5 cut(s) 262, 748, 1190, 1477, 1653
SduI GDGCHC 4 cut(s) 1356, 1477, 1566, 1674
SexAI ACCWGGT 1 cut(s) 1188
SfaNI GCATC 4 cut(s) 714, 1541, 1646, 1923
SfcI CTRYAG 3 cut(s) 5, 1581, 1773
SinI GGWCC 2 cut(s) 334, 1648
SmiMI CAYNNNNRTG 1 cut(s) 1488
SmlI CTYRAG 2 cut(s) 131, 1814
SmoI CTYRAG 2 cut(s) 131, 1814
SseBI AGGCCT 1 cut(s) 931
SsiI CCGC 9 cut(s) 169, 220, 325, 337, 401, 611, 884, 981, 1470
SspMI CTAG 5 cut(s) 588, 705, 780, 825, 1899
StuI AGGCCT 1 cut(s) 931
StyD4I CCNGG 5 cut(s) 260, 746, 1188, 1475, 1651
StyI CCWWGG 2 cut(s) 1483, 1898
TaaI ACNGT 2 cut(s) 661, 1097
TaiI ACGT 6 cut(s) 270, 288, 365, 1058, 1303, 1560
TaqI TCGA 7 cut(s) 531, 680, 848, 904, 1114, 1290, 1384
TatI WGTACW 1 cut(s) 489
TauI GCSGC 1 cut(s) 983
TfiI GAWTC 4 cut(s) 421, 644, 1257, 1924
Tru1I TTAA 5 cut(s) 158, 870, 986, 1061, 1887
Tru9I TTAA 5 cut(s) 158, 870, 986, 1061, 1887
TscAI CASTG 3 cut(s) 958, 1102, 1598
TseFI GTSAC 3 cut(s) 286, 1703, 1954
TseI GCWGC 7 cut(s) 4, 7, 87, 474, 1511, 1580, 1583
Tsp45I GTSAC 3 cut(s) 286, 1703, 1954
TspDTI ATGAA 7 cut(s) 549, 788, 995, 1448, 1640, 1676, 1836
TspGWI ACGGA 1 cut(s) 214
TspRI CASTG 3 cut(s) 958, 1102, 1598
Tth111I GACNNNGTC 2 cut(s) 311, 332
VpaK11BI GGWCC 2 cut(s) 334, 1648
VspI ATTAAT 2 cut(s) 1061, 1887
XapI RAATTY 3 cut(s) 565, 736, 844
XceI RCATGY 3 cut(s) 1272, 1576, 1784
XmaJI CCTAGG 1 cut(s) 1898
XmiI GTMKAC 2 cut(s) 1120, 1371
XspI CTAG 5 cut(s) 588, 705, 780, 825, 1899
Zsp2I ATGCAT 2 cut(s) 1176, 1270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.