MD17G1113300.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0016373
Physical Location & Seq
Forward (+)
9721973 .. 9725168
3196 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1113300.v1.1.491

Sequence Viewer

Length: 2061 bp
ATGCTTCAGCTCACACCATCTCTCTCTCTCCTCCATCAACCATTTCTCTCTCCTCAAACCCTAAACCCCTTTTCGCTTCTCCAAACCTGCAAAACCCTACAAGAAGCAGAGCAGCACCACGCTCTGTTCCTCAAGACCGGAACTTTCAGCCACCCTTCCGTTGCCTCCCACTTCCTTTCTCTCTACGCCGACCCCAAAATCAACAACCTAGAATACGCTCGCTCCGTCTTCGACCAAATCGACCAACCCACGTTGGTGTCCTGGAACATTCTCATCAAAGGCTACGTCGGAAACCAGCGGTCGCATGATGCCATTGTTTTGTTCTATGAATTGGTTCATGAACTTGTTCCGGATAATTTCACTGTGCCGTGCGTGATTAAGGGTTGTGCGCGGTTGAATGCGATTGAGGAAGGGAAGCAGATTCATGGGTTGGTGCTGAAAATTGGGCTTGGGCTGGATAAGTTTGTGCAGAGCAGTTTGGTGAATTTATACTCGAAATGTGGTGAGATTGGTTTGGCCCGGAAGGTGTTTGATCAAATGCGTGACAGAGATTTGGTGACTTGGAATTCGTTGGTTGATGGGTATGCGAGGTGTGGAGAAGTTGAAGTTGCAATGGAGTTGTTTGATCAAATGCAGGAGAGGGATTTGTTTTCGTGGACTGTTTTGGTTGATGGGTTGTCGAAGTGCGGGAAGGTGGAGATGGCTAGGGAGGTGTTTGATAGGATGCCGAATAGAAATTTGGTTTCTTGGAATGCCATGATTAATGGGTACATGAAAGCTGGAGACTTTGAGATGGCACGTCAATTATTCAGTGGGATGCCGGCAAAAGACGTGATAACTTGGAATTCGATGATTGCAGGTTATGAATTTAATGGGAGGTTTATGGAAGCATTGGAGTTGTTTCAAGAAATTTTGAAAGAAGATATTATGCCTAGTCATGCTACATTAGTCAGTGCTCTCTCTGCTGTTTCAGGATTAGCTATCCTGAGTAAGGGGAGATGGATTCATTCTTTCATGGTAAAAAATGGATTTGAGTTAGATGGTGTGCTTGGTACATCGTTGATAGATATGTATTCCAAGTGTGGGAGCATTGAGAATGCTGTGGCCGTGTTTCGAGCTATACACAGGAAGAAATTGGGGCATTGGACTTCTATAATTGTTGGTTTAGGAATGCATGGTATGGCTGACCAAGTTCTTGAGCTATTTCTCGAGATGCGGAAGAATGGAATTCAGCCTCATGCTATAACTTTTATTGGAGTCTTGAATGCATGTAGTCATTCGGGATTGGTCGATCTTGGCCGTTACTATTTTAATCTGATGACAAATGATTATGGAATTGAACCCACATTTGAACACTATGGTTGCTTTGTAGACATTTTATGTCGGGCTGGTTGTCTAGAGGAGGCAAAGAATGTCATTGAAAATATGCCCATGAAACCAAACAAAGTAATCTGGATGAGTTTGCTTAGTGGTGCTCGGAATCATAGAAATGTTAAACTTGGTGATTTTGCAGCTCATCATCTGATTGAATTTTCTCCAGACACTATTGGATGCTATGTTGTTCTTTCTAACCTGTATGCTGCAGCTGATCAGTGGGAGAAAGTTTCACAGGTAAGAGAAATGATGAGAAAGAAAGGAGTCAAAAAGGACCCAGGATGCAGTTCGATAGAGCACAGAGGTGTGCTTCATGAGTTTATTGTGGGTGATAAATCACATCCTCGGACAGAAGAGATATATTTGAAGTTGAGTGAGATAAGAGAGAAACTGAAATCCGTAGGACATGTTCCTGACACAAGCCAAGTTCTGTTGTGTCTTGAAGAGGAAAAAGAGAAGGAAGCCGAACTGGAAAACCATAGTGAGAGATTGGCTATTGCGTTTGGTCTCATTAATTCAGAAGCTGGGAGTCCTATTCGCATTATAAAGAATCTTCGCGTCTGTAGCGATTGCCACTCTGTCACTAAACATCTATCCAGTATCTTTAATCGTGAGATTATTGTGAGAGATAATAGTCGTTTCCATCATTTCAGAAATGGCTCATGTTCTTGCAAAGATTTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR

Protein Analysis

687

Amino Acids

77.44

Weight (kDa)

6.41

Isoelectric Point (pI)

34.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 83 - 131 9.9e-07 PPR repeat family
PPR_2 PF13041 184 - 215 1.1e-07 PPR repeat family
PPR_1 PF12854 184 - 212 5.9e-09 PPR repeat
PPR PF01535 186 - 215 3.6e-09 PPR repeat
PPR PF01535 217 - 246 1.1e-06 PPR repeat
PPR_2 PF13041 246 - 276 5.4e-07 PPR repeat family
PPR PF01535 248 - 276 1.5e-07 PPR repeat
PPR_2 PF13041 276 - 317 3.5e-08 PPR repeat family
PPR PF01535 279 - 308 7.6e-07 PPR repeat
PPR_2 PF13041 382 - 425 2.5e-06 PPR repeat family
E_motif PF20431 495 - 557 2.1e-16 E motif
Eplus_motif PF20430 563 - 586 6.4e-07 E+ motif
DYW_deaminase PF14432 593 - 686 1.4e-38 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016373)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g41070
malus_domestica MD09G1122400.v1.1 MD17G1113300.v1.1
prunus_persica Prupe.3G201100_v2.0.a1
pyrus_communis pycom09g04680
rosa_chinensis RchiOBHm_Chr2g0156631
rosa_laevigata RLG00000020926
rosa_multiflora Rmu_co8328357.1_g000001
rosa_roxburghii Rroxscaffold_2G00092890
rosa_rugosa Rorug02G0454800
rosa_samantha Rh2AG520400 Rh2BG533400 Rh2CG505400 Rh2DG542200
rosa_wichuraiana Rw2G042940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1919
Acc36I ACCTGC 2 cut(s) 95, 848
AccI GTMKAC 1 cut(s) 1371
AccII CGCG 2 cut(s) 391, 1932
AccIII TCCGGA 1 cut(s) 349
AciI CCGC 4 cut(s) 298, 391, 687, 1216
AcoI YGGCCR 2 cut(s) 1104, 1297
AcsI RAATTY 8 cut(s) 484, 565, 736, 844, 866, 909, 1227, 1529
AfaI GTAC 2 cut(s) 770, 1054
AfiI CCNNNNNNNGG 2 cut(s) 991, 1083
AflIII ACRYGT 1 cut(s) 1780
AjiI CACGTC 2 cut(s) 800, 832
AjnI CCWGG 2 cut(s) 260, 1651
AjuI GAANNNNNNNTTGG 2 cut(s) 722, 754
AleI CACNNNNGTG 2 cut(s) 254, 1677
AluBI AGCT 8 cut(s) 10, 779, 980, 1118, 1201, 1514, 1586, 1898
AluI AGCT 8 cut(s) 10, 779, 980, 1118, 1201, 1514, 1586, 1898
Alw21I GWGCWC 3 cut(s) 958, 1477, 1674
Alw26I GTCTC 2 cut(s) 777, 1886
AlwNI CAGNNNCTG 1 cut(s) 1898
Ama87I CYCGRG 1 cut(s) 1208
Aor13HI TCCGGA 1 cut(s) 349
AoxI GGCC 3 cut(s) 516, 1104, 1297
ApeKI GCWGC 4 cut(s) 112, 1511, 1580, 1583
ApoI RAATTY 8 cut(s) 484, 565, 736, 844, 866, 909, 1227, 1529
ArsI GACNNNNNNTTYG 4 cut(s) 270, 302, 550, 582
AseI ATTAAT 2 cut(s) 762, 1887
Asp700I GAANNNNTTC 2 cut(s) 333, 345
AspLEI GCGC 1 cut(s) 391
AspS9I GGNCC 2 cut(s) 517, 1648
AsuC2I CCSGG 1 cut(s) 520
AsuHPI GGTGA 5 cut(s) 493, 515, 568, 1514, 1715
AvaI CYCGRG 1 cut(s) 1208
AvaII GGWCC 1 cut(s) 1648
BbsI GAAGAC 1 cut(s) 220
Bbv12I GWGCWC 3 cut(s) 958, 1477, 1674
BbvI GCAGC 4 cut(s) 124, 1523, 1567, 1595
BccI CCATC 9 cut(s) 25, 42, 572, 665, 694, 787, 993, 1034, 2025
BceAI ACGGC 3 cut(s) 352, 1091, 1284
BciT130I CCWGG 2 cut(s) 262, 1653
BclI TGATCA 3 cut(s) 532, 625, 1588
BcnI CCSGG 1 cut(s) 520
BcoDI GTCTC 2 cut(s) 777, 1886
BfaI CTAG 4 cut(s) 209, 705, 933, 1397
BfmI CTRYAG 2 cut(s) 1581, 1936
BfuAI ACCTGC 2 cut(s) 95, 848
BisI GCNGC 4 cut(s) 113, 1512, 1581, 1584
BlsI GCNGC 4 cut(s) 114, 1513, 1582, 1585
Bme1390I CCNGG 3 cut(s) 262, 520, 1653
Bme18I GGWCC 1 cut(s) 1648
BmeT110I CYCGRG 1 cut(s) 1208
BmgBI CACGTC 2 cut(s) 800, 832
BmgT120I GGNCC 2 cut(s) 517, 1648
BmiI GGNNCC 1 cut(s) 1650
BmrFI CCNGG 3 cut(s) 262, 520, 1653
BmsI GCATC 6 cut(s) 298, 714, 807, 1203, 1541, 1646
BpiI GAAGAC 1 cut(s) 220
BpmI CTGGAG 2 cut(s) 801, 1521
BpuEI CTTGAG 2 cut(s) 116, 1217
BpuMI CCSGG 1 cut(s) 520
BsaI GGTCTC 1 cut(s) 1886
BsaJI CCNNGG 2 cut(s) 1651, 1718
BsaWI WCCGGW 2 cut(s) 137, 349
BsaXI ACNNNNNCTCC 2 cut(s) 206, 236
Bsc4I CCNNNNNNNGG 2 cut(s) 991, 1083
Bse118I RCCGGY 1 cut(s) 820
Bse1I ACTGG 2 cut(s) 1848, 1971
Bse3DI GCAATG 1 cut(s) 618
BseAI TCCGGA 1 cut(s) 349
BseBI CCWGG 2 cut(s) 262, 1653
BseDI CCNNGG 2 cut(s) 1651, 1718
BseGI GGATG 6 cut(s) 729, 822, 1461, 1556, 1661, 1714
BseLI CCNNNNNNNGG 2 cut(s) 991, 1083
BseMI GCAATG 1 cut(s) 618
BseMII CTCAG 1 cut(s) 977
BseNI ACTGG 2 cut(s) 1848, 1971
BseRI GAGGAG 3 cut(s) 20, 42, 1415
BseXI GCAGC 4 cut(s) 124, 1523, 1567, 1595
BseYI CCCAGC 1 cut(s) 1898
BsgI GTGCAG 1 cut(s) 488
Bsh1236I CGCG 2 cut(s) 391, 1932
Bsh1285I CGRYCG 1 cut(s) 302
BshFI GGCC 3 cut(s) 518, 1106, 1299
BsiEI CGRYCG 1 cut(s) 302
BsiHKAI GWGCWC 3 cut(s) 958, 1477, 1674
BsiHKCI CYCGRG 1 cut(s) 1208
BsiSI CCGG 4 cut(s) 138, 350, 520, 821
BslI CCNNNNNNNGG 2 cut(s) 991, 1083
BsmAI GTCTC 2 cut(s) 777, 1886
BsmI GAATGC 5 cut(s) 403, 757, 1102, 1176, 1270
BsnI GGCC 3 cut(s) 518, 1106, 1299
Bso31I GGTCTC 1 cut(s) 1886
BsoBI CYCGRG 1 cut(s) 1208
Bsp1286I GDGCHC 3 cut(s) 958, 1477, 1674
Bsp13I TCCGGA 1 cut(s) 349
Bsp143I GATC 4 cut(s) 532, 625, 1291, 1588
BspACI CCGC 4 cut(s) 298, 391, 687, 1216
BspANI GGCC 3 cut(s) 518, 1106, 1299
BspCNI CTCAG 1 cut(s) 978
BspEI TCCGGA 1 cut(s) 349
BspFNI CGCG 2 cut(s) 391, 1932
BspHI TCATGA 2 cut(s) 337, 1687
BspLI GGNNCC 1 cut(s) 1650
BspMAI CTGCAG 1 cut(s) 1585
BspMI ACCTGC 2 cut(s) 95, 848
BspTNI GGTCTC 1 cut(s) 1886
BsrDI GCAATG 1 cut(s) 618
BsrFI RCCGGY 1 cut(s) 820
BsrI ACTGG 2 cut(s) 1848, 1971
BssAI RCCGGY 1 cut(s) 820
BssECI CCNNGG 2 cut(s) 1651, 1718
BssMI GATC 4 cut(s) 532, 625, 1291, 1588
Bst2UI CCWGG 2 cut(s) 262, 1653
Bst4CI ACNGT 2 cut(s) 364, 661
Bst6I CTCTTC 2 cut(s) 1722, 1812
BstC8I GCNNGC 2 cut(s) 220, 822
BstDEI CTNAG 2 cut(s) 986, 1466
BstENI CCTNNNNNAGG 1 cut(s) 989
BstF5I GGATG 6 cut(s) 729, 822, 1461, 1556, 1661, 1714
BstFNI CGCG 2 cut(s) 391, 1932
BstHHI GCGC 1 cut(s) 391
BstKTI GATC 4 cut(s) 535, 628, 1294, 1591
BstMAI GTCTC 2 cut(s) 777, 1886
BstMBI GATC 4 cut(s) 532, 625, 1291, 1588
BstMCI CGRYCG 1 cut(s) 302
BstMWI GCNNNNNNNGC 2 cut(s) 962, 1938
BstNI CCWGG 2 cut(s) 262, 1653
BstNSI RCATGY 2 cut(s) 1272, 1784
BstSCI CCNGG 3 cut(s) 260, 518, 1651
BstSFI CTRYAG 2 cut(s) 1581, 1936
BstUI CGCG 2 cut(s) 391, 1932
BstV1I GCAGC 4 cut(s) 124, 1523, 1567, 1595
BstV2I GAAGAC 1 cut(s) 220
BsuRI GGCC 3 cut(s) 518, 1106, 1299
BtrI CACGTC 2 cut(s) 800, 832
BtsCI GGATG 6 cut(s) 729, 822, 1461, 1556, 1661, 1714
BtsIMutI CAGTG 4 cut(s) 360, 817, 958, 1598
BveI ACCTGC 2 cut(s) 95, 848
Cac8I GCNNGC 2 cut(s) 220, 822
CaiI CAGNNNCTG 1 cut(s) 1898
CciI TCATGA 2 cut(s) 337, 1687
CfoI GCGC 1 cut(s) 391
Cfr10I RCCGGY 1 cut(s) 820
Cfr13I GGNCC 2 cut(s) 517, 1648
CseI GACGC 1 cut(s) 1921
Csp6I GTAC 2 cut(s) 769, 1053
CviQI GTAC 2 cut(s) 769, 1053
DdeI CTNAG 2 cut(s) 986, 1466
DpnI GATC 4 cut(s) 534, 627, 1293, 1590
DpnII GATC 4 cut(s) 532, 625, 1291, 1588
EaeI YGGCCR 2 cut(s) 1104, 1297
Eam1104I CTCTTC 2 cut(s) 1722, 1812
EarI CTCTTC 2 cut(s) 1722, 1812
Eco31I GGTCTC 1 cut(s) 1886
Eco47I GGWCC 1 cut(s) 1648
Eco88I CYCGRG 1 cut(s) 1208
EcoNI CCTNNNNNAGG 1 cut(s) 989
EcoO109I RGGNCCY 1 cut(s) 1648
EcoRI GAATTC 3 cut(s) 565, 844, 1227
EcoRII CCWGG 2 cut(s) 260, 1651
EcoT22I ATGCAT 2 cut(s) 1176, 1270
FauI CCCGC 1 cut(s) 680
FbaI TGATCA 3 cut(s) 532, 625, 1588
FblI GTMKAC 1 cut(s) 1371
Fnu4HI GCNGC 4 cut(s) 113, 1512, 1581, 1584
FokI GGATG 6 cut(s) 736, 829, 1468, 1563, 1668, 1701
Fsp4HI GCNGC 4 cut(s) 113, 1512, 1581, 1584
FspBI CTAG 4 cut(s) 209, 705, 933, 1397
GlaI GCGC 1 cut(s) 390
GluI GCNGC 4 cut(s) 113, 1512, 1581, 1584
GsaI CCCAGC 1 cut(s) 1902
GsuI CTGGAG 2 cut(s) 801, 1521
HaeIII GGCC 3 cut(s) 518, 1106, 1299
HapII CCGG 4 cut(s) 138, 350, 520, 821
HgaI GACGC 1 cut(s) 1921
HhaI GCGC 1 cut(s) 391
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HinfI GANTC 7 cut(s) 421, 1003, 1257, 1480, 1638, 1903, 1924
HpaII CCGG 4 cut(s) 138, 350, 520, 821
HphI GGTGA 5 cut(s) 493, 515, 568, 1514, 1715
Hpy166II GTNNAC 2 cut(s) 657, 1372
Hpy188I TCNGA 7 cut(s) 290, 1317, 1479, 1524, 1722, 1894, 2027
Hpy8I GTNNAC 2 cut(s) 657, 1372
Hpy99I CGWCG 1 cut(s) 290
HpyAV CCTTC 5 cut(s) 165, 404, 517, 685, 1825
HpyCH4III ACNGT 2 cut(s) 364, 661
HpyCH4IV ACGT 4 cut(s) 251, 285, 799, 831
HpyF10VI GCNNNNNNNGC 2 cut(s) 962, 1938
HpyF3I CTNAG 2 cut(s) 986, 1466
HpySE526I ACGT 4 cut(s) 251, 285, 799, 831
HspAI GCGC 1 cut(s) 389
Kpn2I TCCGGA 1 cut(s) 349
KroI GCCGGC 1 cut(s) 820
KroNI GCCGGC 1 cut(s) 822
Ksp22I TGATCA 3 cut(s) 532, 625, 1588
Kzo9I GATC 4 cut(s) 532, 625, 1291, 1588
LmnI GCTCC 2 cut(s) 227, 1086
Lsp1109I GCAGC 4 cut(s) 124, 1523, 1567, 1595
LweI GCATC 6 cut(s) 298, 714, 807, 1203, 1541, 1646
MaeI CTAG 4 cut(s) 209, 705, 933, 1397
MaeII ACGT 4 cut(s) 251, 285, 799, 831
MaeIII GTNAC 4 cut(s) 542, 556, 1301, 1954
MalI GATC 4 cut(s) 534, 627, 1293, 1590
MboI GATC 4 cut(s) 532, 625, 1291, 1588
MboII GAAGA 7 cut(s) 220, 932, 1141, 1231, 1739, 1829, 1919
MhlI GDGCHC 3 cut(s) 958, 1477, 1674
MlyI GAGTC 3 cut(s) 1266, 1647, 1912
MmeI TCCRAC 1 cut(s) 268
Mph1103I ATGCAT 2 cut(s) 1176, 1270
MroI TCCGGA 1 cut(s) 349
MroNI GCCGGC 1 cut(s) 820
MroXI GAANNNNTTC 2 cut(s) 333, 345
MseI TTAA 7 cut(s) 378, 762, 870, 1311, 1494, 1887, 1980
MslI CAYNNNNRTG 3 cut(s) 254, 1488, 1677
MspA1I CMGCKG 2 cut(s) 298, 1586
MspI CCGG 4 cut(s) 138, 350, 520, 821
MspR9I CCNGG 3 cut(s) 262, 520, 1653
Mva1269I GAATGC 5 cut(s) 403, 757, 1102, 1176, 1270
MvaI CCWGG 2 cut(s) 262, 1653
MvnI CGCG 2 cut(s) 391, 1932
MwoI GCNNNNNNNGC 2 cut(s) 962, 1938
NaeI GCCGGC 1 cut(s) 822
NciI CCSGG 1 cut(s) 520
NdeII GATC 4 cut(s) 532, 625, 1291, 1588
NgoMIV GCCGGC 1 cut(s) 820
NlaIV GGNNCC 1 cut(s) 1650
NmuCI GTSAC 3 cut(s) 542, 556, 1954
NsiI ATGCAT 2 cut(s) 1176, 1270
NspI RCATGY 2 cut(s) 1272, 1784
OliI CACNNNNGTG 2 cut(s) 254, 1677
PaeR7I CTCGAG 1 cut(s) 1208
PagI TCATGA 2 cut(s) 337, 1687
PciI ACATGT 1 cut(s) 1780
PcsI WCGNNNNNNNCGW 2 cut(s) 222, 237
PctI GAATGC 5 cut(s) 403, 757, 1102, 1176, 1270
PdiI GCCGGC 1 cut(s) 822
PdmI GAANNNNTTC 2 cut(s) 333, 345
PfeI GAWTC 4 cut(s) 421, 1003, 1480, 1924
PfoI TCCNGGA 1 cut(s) 260
PkrI GCNGC 4 cut(s) 114, 1513, 1582, 1585
PleI GAGTC 3 cut(s) 1265, 1646, 1911
PpsI GAGTC 3 cut(s) 1265, 1646, 1911
PpuMI RGGWCCY 1 cut(s) 1648
PscI ACATGT 1 cut(s) 1780
PshBI ATTAAT 2 cut(s) 762, 1887
PsiI TTATAA 1 cut(s) 1919
Psp5II RGGWCCY 1 cut(s) 1648
Psp6I CCWGG 2 cut(s) 260, 1651
PspFI CCCAGC 1 cut(s) 1898
PspGI CCWGG 2 cut(s) 260, 1651
PspN4I GGNNCC 1 cut(s) 1650
PspPI GGNCC 2 cut(s) 517, 1648
PspPPI RGGWCCY 1 cut(s) 1648
PsrI GAACNNNNNNTAC 2 cut(s) 1767, 1799
PstI CTGCAG 1 cut(s) 1585
PstNI CAGNNNCTG 1 cut(s) 1898
PvuII CAGCTG 1 cut(s) 1586
RsaI GTAC 2 cut(s) 770, 1054
RsaNI GTAC 2 cut(s) 769, 1053
RseI CAYNNNNRTG 3 cut(s) 254, 1488, 1677
SaqAI TTAA 7 cut(s) 378, 762, 870, 1311, 1494, 1887, 1980
SatI GCNGC 4 cut(s) 113, 1512, 1581, 1584
Sau3AI GATC 4 cut(s) 532, 625, 1291, 1588
Sau96I GGNCC 2 cut(s) 517, 1648
SchI GAGTC 3 cut(s) 1266, 1647, 1912
ScrFI CCNGG 3 cut(s) 262, 520, 1653
SduI GDGCHC 3 cut(s) 958, 1477, 1674
SfaNI GCATC 6 cut(s) 298, 714, 807, 1203, 1541, 1646
SfcI CTRYAG 2 cut(s) 1581, 1936
Sfr274I CTCGAG 1 cut(s) 1208
SinI GGWCC 1 cut(s) 1648
SlaI CTCGAG 1 cut(s) 1208
SmiMI CAYNNNNRTG 3 cut(s) 254, 1488, 1677
SmlI CTYRAG 3 cut(s) 131, 1196, 1208
SmoI CTYRAG 3 cut(s) 131, 1196, 1208
SsiI CCGC 4 cut(s) 298, 391, 687, 1216
SspMI CTAG 4 cut(s) 209, 705, 933, 1397
StyD4I CCNGG 3 cut(s) 260, 518, 1651
TaaI ACNGT 2 cut(s) 364, 661
TaiI ACGT 4 cut(s) 254, 288, 802, 834
TaqI TCGA 9 cut(s) 231, 240, 494, 680, 848, 1114, 1209, 1290, 1664
TfiI GAWTC 4 cut(s) 421, 1003, 1480, 1924
Tru1I TTAA 7 cut(s) 378, 762, 870, 1311, 1494, 1887, 1980
Tru9I TTAA 7 cut(s) 378, 762, 870, 1311, 1494, 1887, 1980
TscAI CASTG 4 cut(s) 367, 817, 958, 1598
TseFI GTSAC 3 cut(s) 542, 556, 1954
TseI GCWGC 4 cut(s) 112, 1511, 1580, 1583
Tsp45I GTSAC 3 cut(s) 542, 556, 1954
TspGWI ACGGA 3 cut(s) 148, 214, 1762
TspRI CASTG 4 cut(s) 367, 817, 958, 1598
VpaK11BI GGWCC 1 cut(s) 1648
VspI ATTAAT 2 cut(s) 762, 1887
XagI CCTNNNNNAGG 1 cut(s) 989
XapI RAATTY 8 cut(s) 484, 565, 736, 844, 866, 909, 1227, 1529
XbaI TCTAGA 1 cut(s) 1396
XceI RCATGY 2 cut(s) 1272, 1784
XhoI CTCGAG 1 cut(s) 1208
XmiI GTMKAC 1 cut(s) 1371
XmnI GAANNNNTTC 2 cut(s) 333, 345
XspI CTAG 4 cut(s) 209, 705, 933, 1397
Zsp2I ATGCAT 2 cut(s) 1176, 1270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.