Rw2G042940

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0016373
Physical Location & Seq
Reverse (-)
69300985 .. 69304769
3785 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G042940.1

Sequence Viewer

Length: 2067 bp
ATGCTGCAGCTCACACCCTCTCACTTCCTCCCTCCACCACCACCACCACCACCACTCTCTCCCCAAAACCTGTCCTTTTCTCTCCTCCAGAGCTGCAAAACCCTACAAGAAGCAACCCAGCTCCACGCACTGTCCCTCAAGACTGGAGCTTTCACCAACCCTTTAATCGCTTCCCGCCTCTTCTCTCTCTACGCCGACCCCAAAATCAACCACCTCACCTACGCCCGCTCCGTCTTCACCCAAATCCAAGACCCCAGCTTGGTCTCCTGGAACGTCCTCATCAAATCCCACGTCACCAACCAACGCTCCCACGACGCCGTCGTTTTGTTCCGCGACTTGGTCCGCCACCACGCGCCGGATAACTTCACGTTGCCGTGTGTGATCAAGGGCTGTGCGAGGCTGAATGCGGTGGAGGAAGGGAAGCAGATTCACGGGCTGGGCTTCAAAATTGGGCTGGGCTTGGATAAGTTTGTGCAGAGTAGCTTGGTGAGTATGTACTCCAAATGTGGAGAGATTGAGTTTGCGCGCAAGGTGTTCGATGAAATGCGTGAGAGGGATTTGGTGGCGTGGAATTCTTTGATTGATGGGTACGCTAGATGTGGGAGAGTTGATGTTGCGGTGGAGTTGTTTGATCAGATGGAGGAGAGGGATTCGTTTTCGTGGACTGTTTTGGTTGATGGGTTATCGAAATGTGGGAATGTAGAGAAGGCTAGGGAGGTGTTTGATAGGATGCCGGATAAGAATTTGGTTTCTTGGAATGCCATGATCAATGGGTACATGAAAGCTAGGGACTTTGAGACGGCGAGGGAGTTGTTTAGTCAGATGGTGACTAGAGATGTGATAACATGGAATTCGATGATTGCTGGTTATGAGTTTAATGGGAGGTTTGCGGAAGCGTTGGAGTTGTTTCGAGAGATTTTGGAAGAGGATCTTAGGCCTACTCCTGCTACATTGGTCAGTGTGCTTTCTGCTGTTTCGGGATTAGCTGCTTTAAGTAAGGGGAGATTGGTTCATTGTGTGATGGTGAAACATGGGTTTGAATTGGATGGTGTGCTTGGTACGTCATTAATAGAAATGTATTATAAGTGTGGAAGCATTGACAGTGCAATGGCTGTGTTTCGAGGTATACAGAGGAAGAAAGTGGGGCATTGGACGGCTATAATTGTTGGTTTAGGAATGCATGGTATGGCTGACCAGGTTCTTCAGCTGTTTCTGGAAATGCGCAAAAATGGGATGGAGCCTCATGCTATAACTTTTGTTGGAATCTTGACTGCATGTAGCCATGCTGGATTGGTTGATCTTGGACGTTACTATTTCAATATGATGATAAAGGATTATGGAATTGAACCCACAATTGAGCACTATGGTTGCTTTGTAGACATTTTATGTCGAGCTGGCTGTTTGGACGAGGCAAAGAATGTCATTGGGAGTATGCCAATGAAACCAAACAAAGTTATTTGGATGAGTTTACTTAGTGGTGCCCGGATCCATGGAAATGTTGAAATTGGTGATTATGCAGCTCAACATTTGATAGAGGTGTCTCCAGATACTATTGGATGCTACGTTGTGCTCTCTAACATGTATGCTGCAGCTGATCAGTGGGAGAAAGTTTCACAGGTAAGAGAAATGATGAAAAAGAGAGGTGTCAAAAAGGACCCAGGATGCAGTAGCATAGAGCACAGAGGTACGCTTCATGAGTTTATTGTTGGTGACAAATCCCATCCTCAGACAAAAGAGATATATTCCAAGTTGAGTGAGGTGAGAGAGAAACTAAAATCTGCAGGACATGTTCCTGACACAAGCCAAGTTTTATTGTGTCTTGAGGATGAAAAGGAGAAGGAAGCTGAACTGGAAAACCATAGTGAGAGATTGGCCATTGCATTTGGTCTAATTAATTTGGAACCTAGGAGTCCTATTCGCATCATAAAGAATCTTCGTGTCTGTAATGATTGCCATTCTGTCACTAAACTCCTTTCCAAGATCTATAATCGTGAGATTGTTGTCAGAGATAATAGCCGTTTCCATCACTTCGCCAATGGGTCATGTTCTTGCAAAGATTTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR

Protein Analysis

688

Amino Acids

77.3

Weight (kDa)

6.94

Isoelectric Point (pI)

34.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 85 - 133 2.7e-06 PPR repeat family
PPR_1 PF12854 185 - 214 1.8e-09 PPR repeat
PPR_2 PF13041 186 - 216 6.6e-08 PPR repeat family
PPR PF01535 188 - 216 4.7e-09 PPR repeat
PPR PF01535 219 - 248 4.2e-07 PPR repeat
PPR_2 PF13041 248 - 279 2.2e-07 PPR repeat family
PPR PF01535 250 - 279 1.1e-07 PPR repeat
PPR_2 PF13041 278 - 324 9.6e-08 PPR repeat family
PPR PF01535 281 - 310 1.1e-06 PPR repeat
PPR_2 PF13041 381 - 427 3.5e-06 PPR repeat family
E_motif PF20431 497 - 559 1.6e-19 E motif
Eplus_motif PF20430 565 - 588 4.2e-09 E+ motif
DYW_deaminase PF14432 595 - 688 5.3e-38 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016373)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g41070
malus_domestica MD09G1122400.v1.1 MD17G1113300.v1.1
prunus_persica Prupe.3G201100_v2.0.a1
pyrus_communis pycom09g04680
rosa_chinensis RchiOBHm_Chr2g0156631
rosa_laevigata RLG00000020926
rosa_multiflora Rmu_co8328357.1_g000001
rosa_roxburghii Rroxscaffold_2G00092890
rosa_rugosa Rorug02G0454800
rosa_samantha Rh2AG520400 Rh2BG533400 Rh2CG505400 Rh2DG542200
rosa_wichuraiana Rw2G042940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1083
Acc16I TGCGCA 1 cut(s) 1223
AccB1I GGYRCC 1 cut(s) 1478
AccBSI CCGCTC 1 cut(s) 228
AccI GTMKAC 2 cut(s) 1126, 1377
AccII CGCG 3 cut(s) 333, 353, 526
AciI CCGC 7 cut(s) 175, 226, 331, 343, 407, 617, 890
AclWI GGATC 3 cut(s) 936, 1480, 1493
AcoI YGGCCR 1 cut(s) 1872
AcsI RAATTY 3 cut(s) 571, 742, 850
AcuI CTGAAG 1 cut(s) 1187
AcyI GRCGYC 1 cut(s) 315
AfaI GTAC 5 cut(s) 497, 590, 776, 1060, 1687
AfiI CCNNNNNNNGG 3 cut(s) 259, 337, 355
AflIII ACRYGT 2 cut(s) 1578, 1786
AgsI TTSAA 5 cut(s) 445, 1040, 1318, 1346, 1502
AjiI CACGTC 1 cut(s) 292
AjnI CCWGG 3 cut(s) 266, 1194, 1657
Alw21I GWGCWC 3 cut(s) 1362, 1572, 1680
Alw26I GTCTC 3 cut(s) 268, 791, 1545
AlwI GGATC 3 cut(s) 936, 1480, 1493
AoxI GGCC 2 cut(s) 935, 1872
ApeKI GCWGC 7 cut(s) 4, 7, 93, 986, 1517, 1586, 1589
ApoI RAATTY 3 cut(s) 571, 742, 850
ArsI GACNNNNNNTTYG 2 cut(s) 276, 308
AseI ATTAAT 2 cut(s) 1067, 1893
AspA2I CCTAGG 1 cut(s) 1904
AspLEI GCGC 4 cut(s) 355, 526, 528, 1224
AspS9I GGNCC 2 cut(s) 340, 1654
AsuC2I CCSGG 1 cut(s) 1483
AvaII GGWCC 2 cut(s) 340, 1654
AvrII CCTAGG 1 cut(s) 1904
BaeGI GKGCMC 1 cut(s) 1483
BalI TGGCCA 1 cut(s) 1874
BamHI GGATCC 1 cut(s) 1485
BanI GGYRCC 1 cut(s) 1478
BbsI GAAGAC 1 cut(s) 226
Bbv12I GWGCWC 3 cut(s) 1362, 1572, 1680
BbvI GCAGC 6 cut(s) 19, 80, 973, 1529, 1573, 1601
BccI CCATC 9 cut(s) 578, 631, 671, 817, 1015, 1040, 1228, 1728, 2031
BceAI ACGGC 5 cut(s) 302, 358, 816, 1170, 2001
BcgI CGANNNNNNTGC 2 cut(s) 517, 551
BciT130I CCWGG 3 cut(s) 268, 1196, 1659
BclI TGATCA 4 cut(s) 381, 631, 765, 1594
BcnI CCSGG 1 cut(s) 1483
BcoDI GTCTC 3 cut(s) 268, 791, 1545
BfaI CTAG 5 cut(s) 594, 711, 786, 831, 1905
BfmI CTRYAG 3 cut(s) 5, 1587, 1779
BglII AGATCT 1 cut(s) 1980
BisI GCNGC 7 cut(s) 5, 8, 94, 987, 1518, 1587, 1590
BlnI CCTAGG 1 cut(s) 1904
BlsI GCNGC 7 cut(s) 6, 9, 95, 988, 1519, 1588, 1591
Bme1390I CCNGG 4 cut(s) 268, 1196, 1483, 1659
Bme18I GGWCC 2 cut(s) 340, 1654
BmgBI CACGTC 1 cut(s) 292
BmgT120I GGNCC 2 cut(s) 340, 1654
BmiI GGNNCC 5 cut(s) 1239, 1480, 1487, 1656, 1902
BmrFI CCNGG 4 cut(s) 268, 1196, 1483, 1659
BmsI GCATC 4 cut(s) 720, 1547, 1652, 1929
BpiI GAAGAC 1 cut(s) 226
BpmI CTGGAG 3 cut(s) 71, 165, 1527
BpuEI CTTGAG 2 cut(s) 122, 1841
BpuMI CCSGG 1 cut(s) 1483
BsaHI GRCGYC 1 cut(s) 315
BsaI GGTCTC 1 cut(s) 268
BsaJI CCNNGG 3 cut(s) 1489, 1657, 1904
BsaXI ACNNNNNCTCC 4 cut(s) 212, 242, 290, 320
Bsc4I CCNNNNNNNGG 3 cut(s) 259, 337, 355
Bse1I ACTGG 2 cut(s) 148, 1854
Bse3DI GCAATG 2 cut(s) 1113, 1875
BseBI CCWGG 3 cut(s) 268, 1196, 1659
BseDI CCNNGG 3 cut(s) 1489, 1657, 1904
BseGI GGATG 8 cut(s) 735, 1051, 1239, 1467, 1562, 1667, 1720, 1831
BseLI CCNNNNNNNGG 3 cut(s) 259, 337, 355
BseMI GCAATG 2 cut(s) 1113, 1875
BseMII CTCAG 1 cut(s) 1739
BseNI ACTGG 2 cut(s) 148, 1854
BsePI GCGCGC 1 cut(s) 524
BseRI GAGGAG 2 cut(s) 74, 656
BseSI GKGCMC 1 cut(s) 1483
BseXI GCAGC 6 cut(s) 19, 80, 973, 1529, 1573, 1601
BseYI CCCAGC 4 cut(s) 117, 254, 436, 454
BsgI GTGCAG 1 cut(s) 494
Bsh1236I CGCG 3 cut(s) 333, 353, 526
BshFI GGCC 2 cut(s) 937, 1874
BshNI GGYRCC 1 cut(s) 1478
BsiHKAI GWGCWC 3 cut(s) 1362, 1572, 1680
BsiSI CCGG 3 cut(s) 356, 734, 1483
BslFI GGGAC 2 cut(s) 118, 803
BslI CCNNNNNNNGG 3 cut(s) 259, 337, 355
BsmAI GTCTC 3 cut(s) 268, 791, 1545
BsmBI CGTCTC 1 cut(s) 791
BsmFI GGGAC 2 cut(s) 118, 803
BsmI GAATGC 3 cut(s) 409, 763, 1182
BsnI GGCC 2 cut(s) 937, 1874
Bso31I GGTCTC 1 cut(s) 268
Bsp1286I GDGCHC 4 cut(s) 1362, 1483, 1572, 1680
Bsp143I GATC 8 cut(s) 381, 631, 765, 928, 1297, 1485, 1594, 1980
Bsp19I CCATGG 1 cut(s) 1489
BspACI CCGC 7 cut(s) 175, 226, 331, 343, 407, 617, 890
BspANI GGCC 2 cut(s) 937, 1874
BspCNI CTCAG 1 cut(s) 1738
BspFNI CGCG 3 cut(s) 333, 353, 526
BspHI TCATGA 1 cut(s) 1693
BspLI GGNNCC 5 cut(s) 1239, 1480, 1487, 1656, 1902
BspMAI CTGCAG 3 cut(s) 9, 1591, 1783
BspPI GGATC 3 cut(s) 936, 1480, 1493
BspT107I GGYRCC 1 cut(s) 1478
BspTNI GGTCTC 1 cut(s) 268
BsrBI CCGCTC 1 cut(s) 228
BsrDI GCAATG 2 cut(s) 1113, 1875
BsrI ACTGG 2 cut(s) 148, 1854
BssECI CCNNGG 3 cut(s) 1489, 1657, 1904
BssHII GCGCGC 1 cut(s) 524
BssMI GATC 8 cut(s) 381, 631, 765, 928, 1297, 1485, 1594, 1980
BssNAI GTATAC 1 cut(s) 1127
BssNI GRCGYC 1 cut(s) 315
BssT1I CCWWGG 2 cut(s) 1489, 1904
Bst1107I GTATAC 1 cut(s) 1127
Bst2UI CCWGG 3 cut(s) 268, 1196, 1659
Bst4CI ACNGT 3 cut(s) 132, 667, 1103
Bst6I CTCTTC 2 cut(s) 185, 918
BstACI GRCGYC 1 cut(s) 315
BstC8I GCNNGC 3 cut(s) 226, 526, 1396
BstDEI CTNAG 3 cut(s) 932, 1472, 1725
BstDSI CCRYGG 1 cut(s) 1489
BstF5I GGATG 8 cut(s) 735, 1051, 1239, 1467, 1562, 1667, 1720, 1831
BstFNI CGCG 3 cut(s) 333, 353, 526
BstHHI GCGC 4 cut(s) 355, 526, 528, 1224
BstKTI GATC 8 cut(s) 384, 634, 768, 931, 1300, 1488, 1597, 1983
BstMAI GTCTC 3 cut(s) 268, 791, 1545
BstMBI GATC 8 cut(s) 381, 631, 765, 928, 1297, 1485, 1594, 1980
BstNI CCWGG 3 cut(s) 268, 1196, 1659
BstNSI RCATGY 3 cut(s) 1278, 1582, 1790
BstSCI CCNGG 4 cut(s) 266, 1194, 1481, 1657
BstSFI CTRYAG 3 cut(s) 5, 1587, 1779
BstSLI GKGCMC 1 cut(s) 1483
BstUI CGCG 3 cut(s) 333, 353, 526
BstV1I GCAGC 6 cut(s) 19, 80, 973, 1529, 1573, 1601
BstV2I GAAGAC 1 cut(s) 226
BstX2I RGATCY 3 cut(s) 928, 1485, 1980
BstYI RGATCY 3 cut(s) 928, 1485, 1980
BstZ17I GTATAC 1 cut(s) 1127
BsuRI GGCC 2 cut(s) 937, 1874
BtgI CCRYGG 1 cut(s) 1489
BtrI CACGTC 1 cut(s) 292
BtsCI GGATG 8 cut(s) 735, 1051, 1239, 1467, 1562, 1667, 1720, 1831
BtsIMutI CAGTG 4 cut(s) 128, 964, 1108, 1604
Cac8I GCNNGC 3 cut(s) 226, 526, 1396
CciI TCATGA 1 cut(s) 1693
CfoI GCGC 4 cut(s) 355, 526, 528, 1224
Cfr13I GGNCC 2 cut(s) 340, 1654
CseI GACGC 1 cut(s) 323
CsiI ACCWGGT 1 cut(s) 1194
Csp6I GTAC 5 cut(s) 496, 589, 775, 1059, 1686
CviQI GTAC 5 cut(s) 496, 589, 775, 1059, 1686
DdeI CTNAG 3 cut(s) 932, 1472, 1725
DpnI GATC 8 cut(s) 383, 633, 767, 930, 1299, 1487, 1596, 1982
DpnII GATC 8 cut(s) 381, 631, 765, 928, 1297, 1485, 1594, 1980
EaeI YGGCCR 1 cut(s) 1872
Eam1104I CTCTTC 2 cut(s) 185, 918
EarI CTCTTC 2 cut(s) 185, 918
EciI GGCGGA 1 cut(s) 332
Eco130I CCWWGG 2 cut(s) 1489, 1904
Eco147I AGGCCT 1 cut(s) 937
Eco31I GGTCTC 1 cut(s) 268
Eco47I GGWCC 2 cut(s) 340, 1654
Eco57I CTGAAG 1 cut(s) 1187
EcoO109I RGGNCCY 1 cut(s) 1654
EcoRI GAATTC 2 cut(s) 571, 850
EcoRII CCWGG 3 cut(s) 266, 1194, 1657
EcoT14I CCWWGG 2 cut(s) 1489, 1904
EcoT22I ATGCAT 1 cut(s) 1182
ErhI CCWWGG 2 cut(s) 1489, 1904
Esp3I CGTCTC 1 cut(s) 791
FalI AAGNNNNNCTT 2 cut(s) 915, 947
FaqI GGGAC 2 cut(s) 118, 803
FauI CCCGC 2 cut(s) 182, 233
FbaI TGATCA 4 cut(s) 381, 631, 765, 1594
FblI GTMKAC 2 cut(s) 1126, 1377
Fnu4HI GCNGC 7 cut(s) 5, 8, 94, 987, 1518, 1587, 1590
FokI GGATG 8 cut(s) 742, 1058, 1246, 1474, 1569, 1674, 1707, 1838
Fsp4HI GCNGC 7 cut(s) 5, 8, 94, 987, 1518, 1587, 1590
FspBI CTAG 5 cut(s) 594, 711, 786, 831, 1905
FspI TGCGCA 1 cut(s) 1223
GlaI GCGC 4 cut(s) 354, 525, 527, 1223
GluI GCNGC 7 cut(s) 5, 8, 94, 987, 1518, 1587, 1590
GsaI CCCAGC 4 cut(s) 121, 258, 440, 458
GsuI CTGGAG 3 cut(s) 71, 165, 1527
HaeIII GGCC 2 cut(s) 937, 1874
HapII CCGG 3 cut(s) 356, 734, 1483
HgaI GACGC 1 cut(s) 323
HhaI GCGC 4 cut(s) 355, 526, 528, 1224
Hin1I GRCGYC 1 cut(s) 315
Hin6I GCGC 4 cut(s) 353, 524, 526, 1222
HinP1I GCGC 4 cut(s) 353, 524, 526, 1222
HinfI GANTC 5 cut(s) 427, 650, 1263, 1909, 1930
HpaII CCGG 3 cut(s) 356, 734, 1483
Hpy166II GTNNAC 4 cut(s) 663, 1127, 1378, 1469
Hpy188I TCNGA 4 cut(s) 636, 822, 1728, 2006
Hpy8I GTNNAC 4 cut(s) 663, 1127, 1378, 1469
Hpy99I CGWCG 2 cut(s) 317, 323
HpyAV CCTTC 3 cut(s) 410, 700, 1831
HpyCH4III ACNGT 3 cut(s) 132, 667, 1103
HpyCH4IV ACGT 6 cut(s) 273, 291, 368, 1061, 1306, 1563
HpyF3I CTNAG 3 cut(s) 932, 1472, 1725
HpySE526I ACGT 6 cut(s) 273, 291, 368, 1061, 1306, 1563
Hsp92I GRCGYC 1 cut(s) 315
HspAI GCGC 4 cut(s) 353, 524, 526, 1222
Ksp22I TGATCA 4 cut(s) 381, 631, 765, 1594
Kzo9I GATC 8 cut(s) 381, 631, 765, 928, 1297, 1485, 1594, 1980
LmnI GCTCC 5 cut(s) 126, 146, 233, 311, 1237
Lsp1109I GCAGC 6 cut(s) 19, 80, 973, 1529, 1573, 1601
LweI GCATC 4 cut(s) 720, 1547, 1652, 1929
MabI ACCWGGT 1 cut(s) 1194
MaeI CTAG 5 cut(s) 594, 711, 786, 831, 1905
MaeII ACGT 6 cut(s) 273, 291, 368, 1061, 1306, 1563
MaeIII GTNAC 5 cut(s) 292, 826, 1307, 1709, 1960
MalI GATC 8 cut(s) 383, 633, 767, 930, 1299, 1487, 1596, 1982
MbiI CCGCTC 1 cut(s) 228
MboI GATC 8 cut(s) 381, 631, 765, 928, 1297, 1485, 1594, 1980
MboII GAAGA 6 cut(s) 172, 226, 935, 1147, 1193, 1925
MfeI CAATTG 1 cut(s) 1353
MflI RGATCY 3 cut(s) 928, 1485, 1980
MhlI GDGCHC 4 cut(s) 1362, 1483, 1572, 1680
MlsI TGGCCA 1 cut(s) 1874
MluNI TGGCCA 1 cut(s) 1874
MlyI GAGTC 1 cut(s) 1918
MmeI TCCRAC 2 cut(s) 879, 1240
Mox20I TGGCCA 1 cut(s) 1874
Mph1103I ATGCAT 1 cut(s) 1182
MscI TGGCCA 1 cut(s) 1874
MseI TTAA 5 cut(s) 164, 876, 992, 1067, 1893
MslI CAYNNNNRTG 1 cut(s) 1494
Msp20I TGGCCA 1 cut(s) 1874
MspA1I CMGCKG 2 cut(s) 1207, 1592
MspI CCGG 3 cut(s) 356, 734, 1483
MspR9I CCNGG 4 cut(s) 268, 1196, 1483, 1659
MunI CAATTG 1 cut(s) 1353
Mva1269I GAATGC 3 cut(s) 409, 763, 1182
MvaI CCWGG 3 cut(s) 268, 1196, 1659
MvnI CGCG 3 cut(s) 333, 353, 526
NciI CCSGG 1 cut(s) 1483
NcoI CCATGG 1 cut(s) 1489
NdeII GATC 8 cut(s) 381, 631, 765, 928, 1297, 1485, 1594, 1980
NlaIV GGNNCC 5 cut(s) 1239, 1480, 1487, 1656, 1902
NmuCI GTSAC 4 cut(s) 292, 826, 1709, 1960
NsbI TGCGCA 1 cut(s) 1223
NsiI ATGCAT 1 cut(s) 1182
NspI RCATGY 3 cut(s) 1278, 1582, 1790
PagI TCATGA 1 cut(s) 1693
PauI GCGCGC 1 cut(s) 524
PceI AGGCCT 1 cut(s) 937
PciI ACATGT 2 cut(s) 1578, 1786
PcsI WCGNNNNNNNCGW 2 cut(s) 228, 318
PctI GAATGC 3 cut(s) 409, 763, 1182
PfeI GAWTC 4 cut(s) 427, 650, 1263, 1930
PflFI GACNNNGTC 2 cut(s) 317, 338
PfoI TCCNGGA 1 cut(s) 266
PkrI GCNGC 7 cut(s) 6, 9, 95, 988, 1519, 1588, 1591
PleI GAGTC 1 cut(s) 1917
PpsI GAGTC 1 cut(s) 1917
PpuMI RGGWCCY 1 cut(s) 1654
PscI ACATGT 2 cut(s) 1578, 1786
PshBI ATTAAT 2 cut(s) 1067, 1893
PsiI TTATAA 1 cut(s) 1083
Psp5II RGGWCCY 1 cut(s) 1654
Psp6I CCWGG 3 cut(s) 266, 1194, 1657
PspFI CCCAGC 4 cut(s) 117, 254, 436, 454
PspGI CCWGG 3 cut(s) 266, 1194, 1657
PspN4I GGNNCC 5 cut(s) 1239, 1480, 1487, 1656, 1902
PspPI GGNCC 2 cut(s) 340, 1654
PspPPI RGGWCCY 1 cut(s) 1654
PstI CTGCAG 3 cut(s) 9, 1591, 1783
PsuI RGATCY 3 cut(s) 928, 1485, 1980
PsyI GACNNNGTC 2 cut(s) 317, 338
PteI GCGCGC 1 cut(s) 524
PvuII CAGCTG 2 cut(s) 1207, 1592
RsaI GTAC 5 cut(s) 497, 590, 776, 1060, 1687
RsaNI GTAC 5 cut(s) 496, 589, 775, 1059, 1686
RseI CAYNNNNRTG 1 cut(s) 1494
SaqAI TTAA 5 cut(s) 164, 876, 992, 1067, 1893
SatI GCNGC 7 cut(s) 5, 8, 94, 987, 1518, 1587, 1590
Sau3AI GATC 8 cut(s) 381, 631, 765, 928, 1297, 1485, 1594, 1980
Sau96I GGNCC 2 cut(s) 340, 1654
SchI GAGTC 1 cut(s) 1918
ScrFI CCNGG 4 cut(s) 268, 1196, 1483, 1659
SduI GDGCHC 4 cut(s) 1362, 1483, 1572, 1680
SexAI ACCWGGT 1 cut(s) 1194
SfaNI GCATC 4 cut(s) 720, 1547, 1652, 1929
SfcI CTRYAG 3 cut(s) 5, 1587, 1779
SinI GGWCC 2 cut(s) 340, 1654
SmiMI CAYNNNNRTG 1 cut(s) 1494
SmlI CTYRAG 2 cut(s) 137, 1820
SmoI CTYRAG 2 cut(s) 137, 1820
SseBI AGGCCT 1 cut(s) 937
SsiI CCGC 7 cut(s) 175, 226, 331, 343, 407, 617, 890
SspMI CTAG 5 cut(s) 594, 711, 786, 831, 1905
StuI AGGCCT 1 cut(s) 937
StyD4I CCNGG 4 cut(s) 266, 1194, 1481, 1657
StyI CCWWGG 2 cut(s) 1489, 1904
TaaI ACNGT 3 cut(s) 132, 667, 1103
TaiI ACGT 6 cut(s) 276, 294, 371, 1064, 1309, 1566
TaqI TCGA 6 cut(s) 537, 686, 854, 910, 1120, 1390
TatI WGTACW 1 cut(s) 495
TfiI GAWTC 4 cut(s) 427, 650, 1263, 1930
Tru1I TTAA 5 cut(s) 164, 876, 992, 1067, 1893
Tru9I TTAA 5 cut(s) 164, 876, 992, 1067, 1893
TscAI CASTG 4 cut(s) 135, 964, 1108, 1604
TseFI GTSAC 4 cut(s) 292, 826, 1709, 1960
TseI GCWGC 7 cut(s) 4, 7, 93, 986, 1517, 1586, 1589
Tsp45I GTSAC 4 cut(s) 292, 826, 1709, 1960
TspDTI ATGAA 7 cut(s) 555, 794, 1001, 1454, 1646, 1682, 1842
TspGWI ACGGA 1 cut(s) 220
TspRI CASTG 4 cut(s) 135, 964, 1108, 1604
Tth111I GACNNNGTC 2 cut(s) 317, 338
VpaK11BI GGWCC 2 cut(s) 340, 1654
VspI ATTAAT 2 cut(s) 1067, 1893
XapI RAATTY 3 cut(s) 571, 742, 850
XceI RCATGY 3 cut(s) 1278, 1582, 1790
XmaJI CCTAGG 1 cut(s) 1904
XmiI GTMKAC 2 cut(s) 1126, 1377
XspI CTAG 5 cut(s) 594, 711, 786, 831, 1905
Zsp2I ATGCAT 1 cut(s) 1182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.