Rorug02G0454800

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0016373
Physical Location & Seq
Reverse (-)
58429968 .. 58431792
1825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0454800.1

Sequence Viewer

Length: 1254 bp
ATGCCTTTGTTACGTACCTGTATTCTTTTATCTTCTTTAGTGTTCTTCAATATCCAGCGGGGAAATTATTGCAGAGGTGAAACCCAGGCTACCTCTAGTAGTTTTGCTCAAACAAAAGGAAACCATTTTGTTATGAATGGGAGATCATTCTACTTGAATGGGTTCAATGCATATTGGATGATGTACATGGCATCTGACCCCTCTACAAGGGCCAAGGTCACTTCTGCATTCAAACAAGCCTCCAAGTATGGTATGAACATTGCCAGAACTTGGGCTTTCAGCGATGGCGGTAGCTACAGACCCCTTCAGTCCTCTCCTGGTTCCTATAACGAAGACATGTTCAAGGGATTAGACTTTGTGATCTCAGAAGCTAGAAATTATGGTGTGCATGTGATACTGAGCTTGGTGAACAACTTCGACGATTATGGGGGAAAAAAGCAATATGTGCAGTGGGCAAAGGAACGTGGCCAAGCCATAAACAACGAAGACGACTTCTATAACAACACTGTTGTCAAAGGCTACTATAAAGATCACGTTAAGACTGTTCTCACGAGAATCAACTCCATTACTGGGGTGGCTTACAGGGACGATTCAACCATTTTTGCTTGGGAATTAATGAACGAGCCTCGTTGTCAACTTGATCCCTCTGGAACCCTTCTCCAGCAATGGGTGAAAGAAATGGCTGCTCACGTCAAGTCCATTGATAGTAACCATTTACTGGAGATAGGGCTTGAAGGATTCTATGGTGGAACAACCCCGGAAAAGAAGCAGTTCAATCCTAGTAACCTAGAATATGGGTCTGATTTCATAGCCAACAACTTGATTCCCGAGATTGACTTTGCCTCGATTCATATATACGCTGAGCAATGGTTACGAGGGGCAAGTGAAGAGGCACAAGCTGATTTTGTGGACAAATGGGTCGGAGTACACATTGAAGACTGTAACTCAGTGGTAAGAAAACCACTAATTATGGGGGAGTTTGGCAAATCTTACAAACTACCAGGGTACACCATAGAAAAGAGGAACGCCTACTTCGAAAAACTATACGACGTCGTCTACCGCAGCGCAAGCAGTAACAGAGCATGCACAGGTGCGCTTTTCTGGCAGCTGCTTGCTCAAGGAATGGATAACTTCAAAGACGGATATGATGTCGTTCTGGAGGAGAGCCCTTCCACGGCTAGTGTGATTGCTCAACAATCTCACAAGCTAATCGAGTTAACTAGGCAAGATAGTAATGTTACAAAAAGTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR

Protein Analysis

417

Amino Acids

47.21

Weight (kDa)

6.11

Isoelectric Point (pI)

41.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GH5_mannosidase PF26410 34 - 369 1.6e-51 GH family 5 beta-mannosidase-like
Cellulase PF00150 47 - 344 3.1e-13 Cellulase (glycosyl hydrolase family 5)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016373)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g41070
malus_domestica MD09G1122400.v1.1 MD17G1113300.v1.1
prunus_persica Prupe.3G201100_v2.0.a1
pyrus_communis pycom09g04680
rosa_chinensis RchiOBHm_Chr2g0156631
rosa_laevigata RLG00000020926
rosa_multiflora Rmu_co8328357.1_g000001
rosa_roxburghii Rroxscaffold_2G00092890
rosa_rugosa Rorug02G0454800
rosa_samantha Rh2AG520400 Rh2BG533400 Rh2CG505400 Rh2DG542200
rosa_wichuraiana Rw2G042940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 917
AatII GACGTC 1 cut(s) 1053
AccB7I CCANNNNNTGG 2 cut(s) 270, 718
AccI GTMKAC 1 cut(s) 1056
AciI CCGC 3 cut(s) 58, 288, 1060
AclWI GGATC 1 cut(s) 635
AcoI YGGCCR 1 cut(s) 466
AcuI CTGAAG 1 cut(s) 290
AcyI GRCGYC 1 cut(s) 1050
AfaI GTAC 5 cut(s) 16, 185, 927, 1007, 1249
AfiI CCNNNNNNNGG 6 cut(s) 207, 270, 570, 667, 718, 1174
AflIII ACRYGT 1 cut(s) 336
AjiI CACGTC 1 cut(s) 691
AjnI CCWGG 3 cut(s) 84, 316, 1000
AluBI AGCT 6 cut(s) 294, 371, 402, 899, 1108, 1207
AluI AGCT 6 cut(s) 294, 371, 402, 899, 1108, 1207
AlwI GGATC 1 cut(s) 635
Ama87I CYCGRG 1 cut(s) 827
AoxI GGCC 2 cut(s) 210, 466
ApeKI GCWGC 4 cut(s) 683, 1062, 1105, 1108
AseI ATTAAT 1 cut(s) 614
Asp700I GAANNNNTTC 3 cut(s) 161, 413, 770
AspLEI GCGC 2 cut(s) 1067, 1096
AspS9I GGNCC 1 cut(s) 210
AsuC2I CCSGG 1 cut(s) 758
AsuHPI GGTGA 3 cut(s) 89, 418, 682
AsuII TTCGAA 1 cut(s) 1035
AvaI CYCGRG 1 cut(s) 827
BalI TGGCCA 1 cut(s) 468
BanII GRGCYC 1 cut(s) 1169
BauI CACGAG 1 cut(s) 550
BbsI GAAGAC 3 cut(s) 339, 492, 942
BbvI GCAGC 4 cut(s) 670, 1074, 1095, 1117
BccI CCATC 1 cut(s) 278
BceAI ACGGC 1 cut(s) 1191
BciT130I CCWGG 3 cut(s) 86, 318, 1002
BcnI CCSGG 1 cut(s) 758
BfaI CTAG 6 cut(s) 96, 372, 780, 788, 1179, 1221
BfmI CTRYAG 1 cut(s) 295
BisI GCNGC 4 cut(s) 684, 1063, 1106, 1109
BlpI GCTNAGC 1 cut(s) 861
BlsI GCNGC 4 cut(s) 685, 1064, 1107, 1110
BmcAI AGTACT 1 cut(s) 1249
Bme1390I CCNGG 4 cut(s) 86, 318, 758, 1002
BmeT110I CYCGRG 1 cut(s) 827
BmgBI CACGTC 1 cut(s) 691
BmgT120I GGNCC 1 cut(s) 210
BmiI GGNNCC 2 cut(s) 322, 652
BmrFI CCNGG 4 cut(s) 86, 318, 758, 1002
BmrI ACTGGG 1 cut(s) 579
BmsI GCATC 1 cut(s) 200
BmuI ACTGGG 1 cut(s) 579
BpiI GAAGAC 3 cut(s) 339, 492, 942
BpmI CTGGAG 3 cut(s) 644, 740, 1178
Bpu1102I GCTNAGC 1 cut(s) 861
Bpu14I TTCGAA 1 cut(s) 1035
BpuEI CTTGAG 1 cut(s) 1101
BpuMI CCSGG 1 cut(s) 758
BsaAI YACGTR 1 cut(s) 14
BsaHI GRCGYC 1 cut(s) 1050
BsaJI CCNNGG 5 cut(s) 84, 213, 756, 1001, 1173
Bsc4I CCNNNNNNNGG 6 cut(s) 207, 270, 570, 667, 718, 1174
Bse1I ACTGG 2 cut(s) 574, 723
Bse3DI GCAATG 3 cut(s) 258, 671, 872
BseBI CCWGG 3 cut(s) 86, 318, 1002
BseDI CCNNGG 5 cut(s) 84, 213, 756, 1001, 1173
BseGI GGATG 1 cut(s) 183
BseLI CCNNNNNNNGG 6 cut(s) 207, 270, 570, 667, 718, 1174
BseMI GCAATG 3 cut(s) 258, 671, 872
BseMII CTCAG 4 cut(s) 378, 389, 852, 960
BseNI ACTGG 2 cut(s) 574, 723
BseRI GAGGAG 1 cut(s) 1175
BseXI GCAGC 4 cut(s) 670, 1074, 1095, 1117
BsgI GTGCAG 1 cut(s) 467
BshFI GGCC 2 cut(s) 212, 468
BsiHKCI CYCGRG 1 cut(s) 827
BsiSI CCGG 1 cut(s) 758
BslFI GGGAC 1 cut(s) 599
BslI CCNNNNNNNGG 6 cut(s) 207, 270, 570, 667, 718, 1174
BsmFI GGGAC 1 cut(s) 599
BsmI GAATGC 1 cut(s) 227
BsnI GGCC 2 cut(s) 212, 468
BsoBI CYCGRG 1 cut(s) 827
Bsp119I TTCGAA 1 cut(s) 1035
Bsp1286I GDGCHC 1 cut(s) 1169
Bsp1407I TGTACA 1 cut(s) 183
Bsp143I GATC 4 cut(s) 143, 360, 529, 640
Bsp1720I GCTNAGC 1 cut(s) 861
BspACI CCGC 3 cut(s) 58, 288, 1060
BspANI GGCC 2 cut(s) 212, 468
BspCNI CTCAG 4 cut(s) 377, 390, 853, 959
BspLI GGNNCC 2 cut(s) 322, 652
BspPI GGATC 1 cut(s) 635
BspT104I TTCGAA 1 cut(s) 1035
BsrDI GCAATG 3 cut(s) 258, 671, 872
BsrGI TGTACA 1 cut(s) 183
BsrI ACTGG 2 cut(s) 574, 723
BssECI CCNNGG 5 cut(s) 84, 213, 756, 1001, 1173
BssMI GATC 4 cut(s) 143, 360, 529, 640
BssNI GRCGYC 1 cut(s) 1050
BssSI CACGAG 1 cut(s) 550
BssT1I CCWWGG 1 cut(s) 213
Bst2BI CACGAG 1 cut(s) 550
Bst2UI CCWGG 3 cut(s) 86, 318, 1002
Bst4CI ACNGT 3 cut(s) 508, 544, 941
Bst6I CTCTTC 1 cut(s) 882
BstACI GRCGYC 1 cut(s) 1050
BstAPI GCANNNNNTGC 1 cut(s) 445
BstAUI TGTACA 1 cut(s) 183
BstBAI YACGTR 1 cut(s) 14
BstBI TTCGAA 1 cut(s) 1035
BstC8I GCNNGC 3 cut(s) 1069, 1084, 1113
BstDEI CTNAG 4 cut(s) 364, 398, 861, 946
BstDSI CCRYGG 1 cut(s) 1173
BstENI CCTNNNNNAGG 1 cut(s) 205
BstF5I GGATG 1 cut(s) 183
BstHHI GCGC 2 cut(s) 1067, 1096
BstKTI GATC 4 cut(s) 146, 363, 532, 643
BstMBI GATC 4 cut(s) 143, 360, 529, 640
BstMWI GCNNNNNNNGC 3 cut(s) 445, 1068, 1102
BstNI CCWGG 3 cut(s) 86, 318, 1002
BstNSI RCATGY 3 cut(s) 340, 392, 1086
BstSCI CCNGG 4 cut(s) 84, 316, 756, 1000
BstSFI CTRYAG 1 cut(s) 295
BstSNI TACGTA 1 cut(s) 14
BstV1I GCAGC 4 cut(s) 670, 1074, 1095, 1117
BstV2I GAAGAC 3 cut(s) 339, 492, 942
BsuRI GGCC 2 cut(s) 212, 468
BtgI CCRYGG 1 cut(s) 1173
BtgZI GCGATG 1 cut(s) 297
BtrI CACGTC 1 cut(s) 691
BtsCI GGATG 1 cut(s) 183
BtsI GCAGTG 1 cut(s) 455
BtsIMutI CAGTG 3 cut(s) 455, 504, 954
Cac8I GCNNGC 3 cut(s) 1069, 1084, 1113
CfoI GCGC 2 cut(s) 1067, 1096
Cfr13I GGNCC 1 cut(s) 210
Csp6I GTAC 5 cut(s) 15, 184, 926, 1006, 1248
CviAII CATG 4 cut(s) 187, 337, 389, 1083
CviQI GTAC 5 cut(s) 15, 184, 926, 1006, 1248
DdeI CTNAG 4 cut(s) 364, 398, 861, 946
DpnI GATC 4 cut(s) 145, 362, 531, 642
DpnII GATC 4 cut(s) 143, 360, 529, 640
DrdI GACNNNNNNGTC 1 cut(s) 917
DseDI GACNNNNNNGTC 1 cut(s) 917
EaeI YGGCCR 1 cut(s) 466
Eam1104I CTCTTC 1 cut(s) 882
EarI CTCTTC 1 cut(s) 882
Eco105I TACGTA 1 cut(s) 14
Eco130I CCWWGG 1 cut(s) 213
Eco24I GRGCYC 1 cut(s) 1169
Eco57I CTGAAG 1 cut(s) 290
Eco88I CYCGRG 1 cut(s) 827
EcoNI CCTNNNNNAGG 1 cut(s) 205
EcoRII CCWGG 3 cut(s) 84, 316, 1000
EcoT14I CCWWGG 1 cut(s) 213
EcoT22I ATGCAT 1 cut(s) 172
EcoT38I GRGCYC 1 cut(s) 1169
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 4 cut(s) 190, 340, 392, 1086
FaqI GGGAC 1 cut(s) 599
FatI CATG 4 cut(s) 186, 336, 388, 1082
FauI CCCGC 1 cut(s) 51
FblI GTMKAC 1 cut(s) 1056
Fnu4HI GCNGC 4 cut(s) 684, 1063, 1106, 1109
FokI GGATG 1 cut(s) 190
FriOI GRGCYC 1 cut(s) 1169
Fsp4HI GCNGC 4 cut(s) 684, 1063, 1106, 1109
FspBI CTAG 6 cut(s) 96, 372, 780, 788, 1179, 1221
GlaI GCGC 2 cut(s) 1066, 1095
GluI GCNGC 4 cut(s) 684, 1063, 1106, 1109
GsuI CTGGAG 3 cut(s) 644, 740, 1178
HaeIII GGCC 2 cut(s) 212, 468
HapII CCGG 1 cut(s) 758
HhaI GCGC 2 cut(s) 1067, 1096
Hin1I GRCGYC 1 cut(s) 1050
Hin1II CATG 4 cut(s) 190, 340, 392, 1086
Hin6I GCGC 2 cut(s) 1065, 1094
HinP1I GCGC 2 cut(s) 1065, 1094
HincII GTYRAC 2 cut(s) 635, 1218
HindII GTYRAC 2 cut(s) 635, 1218
HinfI GANTC 5 cut(s) 555, 590, 738, 823, 847
HpaI GTTAAC 1 cut(s) 1218
HpaII CCGG 1 cut(s) 758
HphI GGTGA 3 cut(s) 89, 418, 682
Hpy166II GTNNAC 7 cut(s) 409, 635, 910, 928, 1008, 1057, 1218
Hpy188I TCNGA 4 cut(s) 196, 367, 802, 923
Hpy188III TCNNGA 4 cut(s) 550, 648, 827, 1157
Hpy8I GTNNAC 7 cut(s) 409, 635, 910, 928, 1008, 1057, 1218
Hpy99I CGWCG 3 cut(s) 422, 1052, 1055
HpyAV CCTTC 4 cut(s) 314, 665, 728, 1179
HpyCH4III ACNGT 3 cut(s) 508, 544, 941
HpyCH4IV ACGT 5 cut(s) 13, 463, 534, 690, 1050
HpyCH4V TGCA 6 cut(s) 72, 170, 227, 388, 448, 1086
HpyF10VI GCNNNNNNNGC 3 cut(s) 445, 1068, 1102
HpyF3I CTNAG 4 cut(s) 364, 398, 861, 946
HpySE526I ACGT 5 cut(s) 13, 463, 534, 690, 1050
Hsp92I GRCGYC 1 cut(s) 1050
Hsp92II CATG 4 cut(s) 190, 340, 392, 1086
HspAI GCGC 2 cut(s) 1065, 1094
KspAI GTTAAC 1 cut(s) 1218
Kzo9I GATC 4 cut(s) 143, 360, 529, 640
Lsp1109I GCAGC 4 cut(s) 670, 1074, 1095, 1117
LweI GCATC 1 cut(s) 200
MaeI CTAG 6 cut(s) 96, 372, 780, 788, 1179, 1221
MaeII ACGT 5 cut(s) 13, 463, 534, 690, 1050
MaeIII GTNAC 8 cut(s) 9, 217, 707, 782, 870, 941, 1073, 1237
MalI GATC 4 cut(s) 145, 362, 531, 642
MboI GATC 4 cut(s) 143, 360, 529, 640
MboII GAAGA 6 cut(s) 24, 37, 344, 497, 899, 947
MhlI GDGCHC 1 cut(s) 1169
MlsI TGGCCA 1 cut(s) 468
MluCI AATT 4 cut(s) 64, 376, 611, 966
MluNI TGGCCA 1 cut(s) 468
MmeI TCCRAC 1 cut(s) 901
Mox20I TGGCCA 1 cut(s) 468
Mph1103I ATGCAT 1 cut(s) 172
MroXI GAANNNNTTC 3 cut(s) 161, 413, 770
MscI TGGCCA 1 cut(s) 468
MseI TTAA 3 cut(s) 537, 614, 1217
Msp20I TGGCCA 1 cut(s) 468
MspA1I CMGCKG 2 cut(s) 58, 1108
MspI CCGG 1 cut(s) 758
MspR9I CCNGG 4 cut(s) 86, 318, 758, 1002
Mva1269I GAATGC 1 cut(s) 227
MvaI CCWGG 3 cut(s) 86, 318, 1002
MwoI GCNNNNNNNGC 3 cut(s) 445, 1068, 1102
NciI CCSGG 1 cut(s) 758
NdeII GATC 4 cut(s) 143, 360, 529, 640
NlaIII CATG 4 cut(s) 190, 340, 392, 1086
NlaIV GGNNCC 2 cut(s) 322, 652
NmuCI GTSAC 1 cut(s) 217
NsiI ATGCAT 1 cut(s) 172
NspI RCATGY 3 cut(s) 340, 392, 1086
NspV TTCGAA 1 cut(s) 1035
PaeI GCATGC 1 cut(s) 1086
PciI ACATGT 1 cut(s) 336
PcsI WCGNNNNNNNCGW 1 cut(s) 1032
PctI GAATGC 1 cut(s) 227
PdmI GAANNNNTTC 3 cut(s) 161, 413, 770
PfeI GAWTC 5 cut(s) 555, 590, 738, 823, 847
PflFI GACNNNGTC 1 cut(s) 1052
PflMI CCANNNNNTGG 2 cut(s) 270, 718
PkrI GCNGC 4 cut(s) 685, 1064, 1107, 1110
Ppu21I YACGTR 1 cut(s) 14
PscI ACATGT 1 cut(s) 336
PshBI ATTAAT 1 cut(s) 614
Psp6I CCWGG 3 cut(s) 84, 316, 1000
PspGI CCWGG 3 cut(s) 84, 316, 1000
PspN4I GGNNCC 2 cut(s) 322, 652
PspPI GGNCC 1 cut(s) 210
PsyI GACNNNGTC 1 cut(s) 1052
PvuII CAGCTG 1 cut(s) 1108
RsaI GTAC 5 cut(s) 16, 185, 927, 1007, 1249
RsaNI GTAC 5 cut(s) 15, 184, 926, 1006, 1248
SaqAI TTAA 3 cut(s) 537, 614, 1217
SatI GCNGC 4 cut(s) 684, 1063, 1106, 1109
Sau3AI GATC 4 cut(s) 143, 360, 529, 640
Sau96I GGNCC 1 cut(s) 210
ScaI AGTACT 1 cut(s) 1249
ScrFI CCNGG 4 cut(s) 86, 318, 758, 1002
SduI GDGCHC 1 cut(s) 1169
SfaNI GCATC 1 cut(s) 200
SfcI CTRYAG 1 cut(s) 295
SfuI TTCGAA 1 cut(s) 1035
SmlI CTYRAG 1 cut(s) 1116
SmoI CTYRAG 1 cut(s) 1116
SnaBI TACGTA 1 cut(s) 14
SphI GCATGC 1 cut(s) 1086
Sse9I AATT 4 cut(s) 64, 376, 611, 966
SsiI CCGC 3 cut(s) 58, 288, 1060
SspMI CTAG 6 cut(s) 96, 372, 780, 788, 1179, 1221
StyD4I CCNGG 4 cut(s) 84, 316, 756, 1000
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 3 cut(s) 508, 544, 941
TaiI ACGT 5 cut(s) 16, 466, 537, 693, 1053
TaqI TCGA 4 cut(s) 417, 845, 1035, 1212
TasI AATT 4 cut(s) 64, 376, 611, 966
TatI WGTACW 3 cut(s) 183, 925, 1247
TfiI GAWTC 5 cut(s) 555, 590, 738, 823, 847
Tru1I TTAA 3 cut(s) 537, 614, 1217
Tru9I TTAA 3 cut(s) 537, 614, 1217
TscAI CASTG 3 cut(s) 455, 511, 954
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 4 cut(s) 683, 1062, 1105, 1108
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 5 cut(s) 149, 269, 632, 796, 839
TspGWI ACGGA 1 cut(s) 1155
TspRI CASTG 3 cut(s) 455, 511, 954
Tth111I GACNNNGTC 1 cut(s) 1052
Van91I CCANNNNNTGG 2 cut(s) 270, 718
VspI ATTAAT 1 cut(s) 614
XagI CCTNNNNNAGG 1 cut(s) 205
XceI RCATGY 3 cut(s) 340, 392, 1086
XcmI CCANNNNNNNNNTGG 1 cut(s) 571
XmiI GTMKAC 1 cut(s) 1056
XmnI GAANNNNTTC 3 cut(s) 161, 413, 770
XspI CTAG 6 cut(s) 96, 372, 780, 788, 1179, 1221
ZraI GACGTC 1 cut(s) 1051
ZrmI AGTACT 1 cut(s) 1249
Zsp2I ATGCAT 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.