Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g41070 |
| malus_domestica | MD09G1122400.v1.1 MD17G1113300.v1.1 |
| prunus_persica | Prupe.3G201100_v2.0.a1 |
| pyrus_communis | pycom09g04680 |
| rosa_chinensis | RchiOBHm_Chr2g0156631 |
| rosa_laevigata | RLG00000020926 |
| rosa_multiflora | Rmu_co8328357.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00092890 |
| rosa_rugosa | Rorug02G0454800 |
| rosa_samantha | Rh2AG520400 Rh2BG533400 Rh2CG505400 Rh2DG542200 |
| rosa_wichuraiana | Rw2G042940 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1913 |
| Acc16I | TGCGCA | 1 cut(s) | 1211 |
| Acc36I | ACCTGC | 1 cut(s) | 842 |
| AccI | GTMKAC | 1 cut(s) | 1365 |
| AccII | CGCG | 1 cut(s) | 1380 |
| AccIII | TCCGGA | 2 cut(s) | 343, 773 |
| AciI | CCGC | 3 cut(s) | 681, 1378, 1577 |
| AclI | AACGTT | 2 cut(s) | 261, 292 |
| AcoI | YGGCCR | 1 cut(s) | 1176 |
| AcsI | RAATTY | 5 cut(s) | 559, 730, 838, 860, 903 |
| AfaI | GTAC | 2 cut(s) | 360, 1048 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1077 |
| AflIII | ACRYGT | 3 cut(s) | 1524, 1566, 1774 |
| AjiI | CACGTC | 2 cut(s) | 794, 1525 |
| AjnI | CCWGG | 4 cut(s) | 254, 1182, 1476, 1645 |
| AleI | CACNNNNGTG | 1 cut(s) | 1671 |
| AloI | GAACNNNNNNTCC | 6 cut(s) | 277, 278, 309, 310, 1536, 1568 |
| AluBI | AGCT | 4 cut(s) | 1112, 1195, 1508, 1832 |
| AluI | AGCT | 4 cut(s) | 1112, 1195, 1508, 1832 |
| Alw21I | GWGCWC | 5 cut(s) | 385, 952, 1096, 1471, 1668 |
| Alw26I | GTCTC | 1 cut(s) | 1533 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1538 |
| Aor13HI | TCCGGA | 2 cut(s) | 343, 773 |
| AoxI | GGCC | 1 cut(s) | 1176 |
| ApeKI | GCWGC | 2 cut(s) | 1505, 1574 |
| ApoI | RAATTY | 5 cut(s) | 559, 730, 838, 860, 903 |
| AseI | ATTAAT | 2 cut(s) | 756, 1881 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 327, 339 |
| AspLEI | GCGC | 3 cut(s) | 1212, 1227, 1382 |
| AspS9I | GGNCC | 1 cut(s) | 1642 |
| AsuHPI | GGTGA | 3 cut(s) | 509, 1508, 1709 |
| AvaII | GGWCC | 1 cut(s) | 1642 |
| BbsI | GAAGAC | 1 cut(s) | 214 |
| Bbv12I | GWGCWC | 5 cut(s) | 385, 952, 1096, 1471, 1668 |
| BbvI | GCAGC | 2 cut(s) | 1517, 1561 |
| BccI | CCATC | 7 cut(s) | 39, 566, 688, 781, 987, 1028, 2019 |
| BceAI | ACGGC | 1 cut(s) | 944 |
| BciT130I | CCWGG | 4 cut(s) | 256, 1184, 1478, 1647 |
| BciVI | GTATCC | 1 cut(s) | 990 |
| BclI | TGATCA | 2 cut(s) | 526, 619 |
| BcoDI | GTCTC | 1 cut(s) | 1533 |
| BfaI | CTAG | 3 cut(s) | 513, 699, 927 |
| BfmI | CTRYAG | 1 cut(s) | 1113 |
| BfuAI | ACCTGC | 1 cut(s) | 842 |
| BfuI | GTATCC | 1 cut(s) | 990 |
| BisI | GCNGC | 4 cut(s) | 1378, 1506, 1575, 1578 |
| BlsI | GCNGC | 4 cut(s) | 1379, 1507, 1576, 1579 |
| Bme1390I | CCNGG | 4 cut(s) | 256, 1184, 1478, 1647 |
| Bme18I | GGWCC | 1 cut(s) | 1642 |
| BmgBI | CACGTC | 2 cut(s) | 794, 1525 |
| BmgT120I | GGNCC | 1 cut(s) | 1642 |
| BmiI | GGNNCC | 3 cut(s) | 287, 1475, 1644 |
| BmrFI | CCNGG | 4 cut(s) | 256, 1184, 1478, 1647 |
| BmsI | GCATC | 6 cut(s) | 292, 708, 801, 1197, 1535, 1640 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1788 |
| BpiI | GAAGAC | 1 cut(s) | 214 |
| BpmI | CTGGAG | 1 cut(s) | 1515 |
| BpuEI | CTTGAG | 2 cut(s) | 1211, 1223 |
| BsaJI | CCNNGG | 4 cut(s) | 246, 1477, 1645, 1712 |
| BsaWI | WCCGGW | 3 cut(s) | 131, 343, 773 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1077 |
| Bse1I | ACTGG | 1 cut(s) | 1965 |
| Bse3DI | GCAATG | 2 cut(s) | 38, 612 |
| BseAI | TCCGGA | 2 cut(s) | 343, 773 |
| BseBI | CCWGG | 4 cut(s) | 256, 1184, 1478, 1647 |
| BseDI | CCNNGG | 4 cut(s) | 246, 1477, 1645, 1712 |
| BseGI | GGATG | 5 cut(s) | 723, 1455, 1550, 1655, 1708 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1077 |
| BseMI | GCAATG | 2 cut(s) | 38, 612 |
| BseMII | CTCAG | 1 cut(s) | 1734 |
| BseNI | ACTGG | 1 cut(s) | 1965 |
| BseRI | GAGGAG | 2 cut(s) | 39, 1644 |
| BseXI | GCAGC | 2 cut(s) | 1517, 1561 |
| BseYI | CCCAGC | 1 cut(s) | 148 |
| BsgI | GTGCAG | 1 cut(s) | 482 |
| Bsh1236I | CGCG | 1 cut(s) | 1380 |
| BshFI | GGCC | 1 cut(s) | 1178 |
| BsiHKAI | GWGCWC | 5 cut(s) | 385, 952, 1096, 1471, 1668 |
| BsiSI | CCGG | 3 cut(s) | 132, 344, 774 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1077 |
| BsmAI | GTCTC | 1 cut(s) | 1533 |
| BsmI | GAATGC | 4 cut(s) | 751, 1170, 1227, 1264 |
| BsnI | GGCC | 1 cut(s) | 1178 |
| Bsp1286I | GDGCHC | 5 cut(s) | 385, 952, 1096, 1471, 1668 |
| Bsp13I | TCCGGA | 2 cut(s) | 343, 773 |
| Bsp143I | GATC | 5 cut(s) | 226, 526, 619, 1285, 1975 |
| BspACI | CCGC | 3 cut(s) | 681, 1378, 1577 |
| BspANI | GGCC | 1 cut(s) | 1178 |
| BspCNI | CTCAG | 1 cut(s) | 1735 |
| BspEI | TCCGGA | 2 cut(s) | 343, 773 |
| BspFNI | CGCG | 1 cut(s) | 1380 |
| BspHI | TCATGA | 1 cut(s) | 331 |
| BspLI | GGNNCC | 3 cut(s) | 287, 1475, 1644 |
| BspMI | ACCTGC | 1 cut(s) | 842 |
| BsrDI | GCAATG | 2 cut(s) | 38, 612 |
| BsrI | ACTGG | 1 cut(s) | 1965 |
| BssECI | CCNNGG | 4 cut(s) | 246, 1477, 1645, 1712 |
| BssMI | GATC | 5 cut(s) | 226, 526, 619, 1285, 1975 |
| BssT1I | CCWWGG | 1 cut(s) | 246 |
| Bst2UI | CCWGG | 4 cut(s) | 256, 1184, 1478, 1647 |
| Bst4CI | ACNGT | 5 cut(s) | 358, 363, 655, 873, 1540 |
| Bst6I | CTCTTC | 1 cut(s) | 1806 |
| BstC8I | GCNNGC | 2 cut(s) | 214, 1510 |
| BstDEI | CTNAG | 4 cut(s) | 980, 1460, 1734, 1743 |
| BstF5I | GGATG | 5 cut(s) | 723, 1455, 1550, 1655, 1708 |
| BstFNI | CGCG | 1 cut(s) | 1380 |
| BstHHI | GCGC | 3 cut(s) | 1212, 1227, 1382 |
| BstKTI | GATC | 5 cut(s) | 229, 529, 622, 1288, 1978 |
| BstMAI | GTCTC | 1 cut(s) | 1533 |
| BstMBI | GATC | 5 cut(s) | 226, 526, 619, 1285, 1975 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 956 |
| BstNI | CCWGG | 4 cut(s) | 256, 1184, 1478, 1647 |
| BstNSI | RCATGY | 3 cut(s) | 1266, 1570, 1778 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1788 |
| BstSCI | CCNGG | 4 cut(s) | 254, 1182, 1476, 1645 |
| BstSFI | CTRYAG | 1 cut(s) | 1113 |
| BstUI | CGCG | 1 cut(s) | 1380 |
| BstV1I | GCAGC | 2 cut(s) | 1517, 1561 |
| BstV2I | GAAGAC | 1 cut(s) | 214 |
| BsuI | GTATCC | 1 cut(s) | 990 |
| BsuRI | GGCC | 1 cut(s) | 1178 |
| BtrI | CACGTC | 2 cut(s) | 794, 1525 |
| BtsCI | GGATG | 5 cut(s) | 723, 1455, 1550, 1655, 1708 |
| BtsIMutI | CAGTG | 2 cut(s) | 952, 1536 |
| BveI | ACCTGC | 1 cut(s) | 842 |
| Cac8I | GCNNGC | 2 cut(s) | 214, 1510 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1538 |
| CciI | TCATGA | 1 cut(s) | 331 |
| CfoI | GCGC | 3 cut(s) | 1212, 1227, 1382 |
| Cfr13I | GGNCC | 1 cut(s) | 1642 |
| CsiI | ACCWGGT | 1 cut(s) | 1182 |
| Csp6I | GTAC | 2 cut(s) | 359, 1047 |
| CviQI | GTAC | 2 cut(s) | 359, 1047 |
| DdeI | CTNAG | 4 cut(s) | 980, 1460, 1734, 1743 |
| DpnI | GATC | 5 cut(s) | 228, 528, 621, 1287, 1977 |
| DpnII | GATC | 5 cut(s) | 226, 526, 619, 1285, 1975 |
| EaeI | YGGCCR | 1 cut(s) | 1176 |
| Eam1104I | CTCTTC | 1 cut(s) | 1806 |
| EarI | CTCTTC | 1 cut(s) | 1806 |
| Eco130I | CCWWGG | 1 cut(s) | 246 |
| Eco47I | GGWCC | 1 cut(s) | 1642 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1642 |
| EcoRI | GAATTC | 2 cut(s) | 559, 838 |
| EcoRII | CCWGG | 4 cut(s) | 254, 1182, 1476, 1645 |
| EcoT14I | CCWWGG | 1 cut(s) | 246 |
| EcoT22I | ATGCAT | 2 cut(s) | 1170, 1264 |
| ErhI | CCWWGG | 1 cut(s) | 246 |
| FauI | CCCGC | 1 cut(s) | 674 |
| FauNDI | CATATG | 1 cut(s) | 1870 |
| FbaI | TGATCA | 2 cut(s) | 526, 619 |
| FblI | GTMKAC | 1 cut(s) | 1365 |
| Fnu4HI | GCNGC | 4 cut(s) | 1378, 1506, 1575, 1578 |
| FokI | GGATG | 5 cut(s) | 730, 1462, 1557, 1662, 1695 |
| Fsp4HI | GCNGC | 4 cut(s) | 1378, 1506, 1575, 1578 |
| FspBI | CTAG | 3 cut(s) | 513, 699, 927 |
| FspI | TGCGCA | 1 cut(s) | 1211 |
| GlaI | GCGC | 3 cut(s) | 1211, 1226, 1381 |
| GluI | GCNGC | 4 cut(s) | 1378, 1506, 1575, 1578 |
| GsaI | CCCAGC | 1 cut(s) | 152 |
| GsuI | CTGGAG | 1 cut(s) | 1515 |
| HaeIII | GGCC | 1 cut(s) | 1178 |
| HapII | CCGG | 3 cut(s) | 132, 344, 774 |
| HhaI | GCGC | 3 cut(s) | 1212, 1227, 1382 |
| Hin6I | GCGC | 3 cut(s) | 1210, 1225, 1380 |
| HinP1I | GCGC | 3 cut(s) | 1210, 1225, 1380 |
| HincII | GTYRAC | 2 cut(s) | 664, 1740 |
| HindII | GTYRAC | 2 cut(s) | 664, 1740 |
| HinfI | GANTC | 7 cut(s) | 206, 415, 638, 1251, 1889, 1897, 1918 |
| HpaII | CCGG | 3 cut(s) | 132, 344, 774 |
| HphI | GGTGA | 3 cut(s) | 509, 1508, 1709 |
| Hpy166II | GTNNAC | 4 cut(s) | 651, 664, 1366, 1740 |
| Hpy188I | TCNGA | 7 cut(s) | 810, 1250, 1311, 1473, 1716, 1768, 2021 |
| Hpy8I | GTNNAC | 4 cut(s) | 651, 664, 1366, 1740 |
| HpyAV | CCTTC | 6 cut(s) | 27, 398, 679, 1409, 1763, 1819 |
| HpyCH4III | ACNGT | 5 cut(s) | 358, 363, 655, 873, 1540 |
| HpyCH4IV | ACGT | 4 cut(s) | 261, 292, 793, 1524 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 956 |
| HpyF3I | CTNAG | 4 cut(s) | 980, 1460, 1734, 1743 |
| HpySE526I | ACGT | 4 cut(s) | 261, 292, 793, 1524 |
| HspAI | GCGC | 3 cut(s) | 1210, 1225, 1380 |
| Kpn2I | TCCGGA | 2 cut(s) | 343, 773 |
| Ksp22I | TGATCA | 2 cut(s) | 526, 619 |
| Kzo9I | GATC | 5 cut(s) | 226, 526, 619, 1285, 1975 |
| LmnI | GCTCC | 2 cut(s) | 221, 1080 |
| Lsp1109I | GCAGC | 2 cut(s) | 1517, 1561 |
| LweI | GCATC | 6 cut(s) | 292, 708, 801, 1197, 1535, 1640 |
| MabI | ACCWGGT | 1 cut(s) | 1182 |
| MaeI | CTAG | 3 cut(s) | 513, 699, 927 |
| MaeII | ACGT | 4 cut(s) | 261, 292, 793, 1524 |
| MaeIII | GTNAC | 6 cut(s) | 550, 761, 1295, 1697, 1931, 1948 |
| MalI | GATC | 5 cut(s) | 228, 528, 621, 1287, 1977 |
| MboI | GATC | 5 cut(s) | 226, 526, 619, 1285, 1975 |
| MboII | GAAGA | 8 cut(s) | 214, 248, 923, 926, 1135, 1547, 1823, 1913 |
| MfeI | CAATTG | 3 cut(s) | 153, 797, 1341 |
| MhlI | GDGCHC | 5 cut(s) | 385, 952, 1096, 1471, 1668 |
| MlyI | GAGTC | 3 cut(s) | 200, 1260, 1906 |
| MmeI | TCCRAC | 1 cut(s) | 1522 |
| MnlI | CCTC | 9 cut(s) | 60, 68, 134, 1239, 1390, 1622, 1664, 1722, 1807 |
| Mph1103I | ATGCAT | 2 cut(s) | 1170, 1264 |
| MroI | TCCGGA | 2 cut(s) | 343, 773 |
| MroXI | GAANNNNTTC | 2 cut(s) | 327, 339 |
| MseI | TTAA | 4 cut(s) | 389, 756, 864, 1881 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1671 |
| MspI | CCGG | 3 cut(s) | 132, 344, 774 |
| MspR9I | CCNGG | 4 cut(s) | 256, 1184, 1478, 1647 |
| MunI | CAATTG | 3 cut(s) | 153, 797, 1341 |
| Mva1269I | GAATGC | 4 cut(s) | 751, 1170, 1227, 1264 |
| MvaI | CCWGG | 4 cut(s) | 256, 1184, 1478, 1647 |
| MvnI | CGCG | 1 cut(s) | 1380 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 956 |
| NdeI | CATATG | 1 cut(s) | 1870 |
| NdeII | GATC | 5 cut(s) | 226, 526, 619, 1285, 1975 |
| NlaIV | GGNNCC | 3 cut(s) | 287, 1475, 1644 |
| NmuCI | GTSAC | 2 cut(s) | 1697, 1948 |
| NsbI | TGCGCA | 1 cut(s) | 1211 |
| NsiI | ATGCAT | 2 cut(s) | 1170, 1264 |
| NspI | RCATGY | 3 cut(s) | 1266, 1570, 1778 |
| OliI | CACNNNNGTG | 1 cut(s) | 1671 |
| PagI | TCATGA | 1 cut(s) | 331 |
| PciI | ACATGT | 2 cut(s) | 1566, 1774 |
| PctI | GAATGC | 4 cut(s) | 751, 1170, 1227, 1264 |
| PdmI | GAANNNNTTC | 2 cut(s) | 327, 339 |
| PfeI | GAWTC | 4 cut(s) | 415, 638, 1889, 1918 |
| PfoI | TCCNGGA | 1 cut(s) | 254 |
| PkrI | GCNGC | 4 cut(s) | 1379, 1507, 1576, 1579 |
| PleI | GAGTC | 3 cut(s) | 200, 1259, 1905 |
| PpsI | GAGTC | 3 cut(s) | 200, 1259, 1905 |
| PpuMI | RGGWCCY | 1 cut(s) | 1642 |
| PscI | ACATGT | 2 cut(s) | 1566, 1774 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1788 |
| PshBI | ATTAAT | 2 cut(s) | 756, 1881 |
| PsiI | TTATAA | 1 cut(s) | 1913 |
| Psp1406I | AACGTT | 2 cut(s) | 261, 292 |
| Psp5II | RGGWCCY | 1 cut(s) | 1642 |
| Psp6I | CCWGG | 4 cut(s) | 254, 1182, 1476, 1645 |
| PspFI | CCCAGC | 1 cut(s) | 148 |
| PspGI | CCWGG | 4 cut(s) | 254, 1182, 1476, 1645 |
| PspN4I | GGNNCC | 3 cut(s) | 287, 1475, 1644 |
| PspPI | GGNCC | 1 cut(s) | 1642 |
| PspPPI | RGGWCCY | 1 cut(s) | 1642 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1538 |
| RsaI | GTAC | 2 cut(s) | 360, 1048 |
| RsaNI | GTAC | 2 cut(s) | 359, 1047 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1671 |
| SaqAI | TTAA | 4 cut(s) | 389, 756, 864, 1881 |
| SatI | GCNGC | 4 cut(s) | 1378, 1506, 1575, 1578 |
| Sau3AI | GATC | 5 cut(s) | 226, 526, 619, 1285, 1975 |
| Sau96I | GGNCC | 1 cut(s) | 1642 |
| SchI | GAGTC | 3 cut(s) | 200, 1260, 1906 |
| ScrFI | CCNGG | 4 cut(s) | 256, 1184, 1478, 1647 |
| SduI | GDGCHC | 5 cut(s) | 385, 952, 1096, 1471, 1668 |
| SexAI | ACCWGGT | 1 cut(s) | 1182 |
| SfaNI | GCATC | 6 cut(s) | 292, 708, 801, 1197, 1535, 1640 |
| SfcI | CTRYAG | 1 cut(s) | 1113 |
| SinI | GGWCC | 1 cut(s) | 1642 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1671 |
| SmlI | CTYRAG | 2 cut(s) | 1190, 1202 |
| SmoI | CTYRAG | 2 cut(s) | 1190, 1202 |
| SsiI | CCGC | 3 cut(s) | 681, 1378, 1577 |
| SspMI | CTAG | 3 cut(s) | 513, 699, 927 |
| StyD4I | CCNGG | 4 cut(s) | 254, 1182, 1476, 1645 |
| StyI | CCWWGG | 1 cut(s) | 246 |
| TaaI | ACNGT | 5 cut(s) | 358, 363, 655, 873, 1540 |
| TaiI | ACGT | 4 cut(s) | 264, 295, 796, 1527 |
| TaqI | TCGA | 3 cut(s) | 225, 842, 1108 |
| TauI | GCSGC | 2 cut(s) | 1380, 1580 |
| TfiI | GAWTC | 4 cut(s) | 415, 638, 1889, 1918 |
| Tru1I | TTAA | 4 cut(s) | 389, 756, 864, 1881 |
| Tru9I | TTAA | 4 cut(s) | 389, 756, 864, 1881 |
| TscAI | CASTG | 2 cut(s) | 952, 1543 |
| TseFI | GTSAC | 2 cut(s) | 1697, 1948 |
| TseI | GCWGC | 2 cut(s) | 1505, 1574 |
| Tsp45I | GTSAC | 2 cut(s) | 1697, 1948 |
| TspGWI | ACGGA | 1 cut(s) | 208 |
| TspRI | CASTG | 2 cut(s) | 952, 1543 |
| VpaK11BI | GGWCC | 1 cut(s) | 1642 |
| VspI | ATTAAT | 2 cut(s) | 756, 1881 |
| XapI | RAATTY | 5 cut(s) | 559, 730, 838, 860, 903 |
| XceI | RCATGY | 3 cut(s) | 1266, 1570, 1778 |
| XmiI | GTMKAC | 1 cut(s) | 1365 |
| XmnI | GAANNNNTTC | 2 cut(s) | 327, 339 |
| XspI | CTAG | 3 cut(s) | 513, 699, 927 |
| Zsp2I | ATGCAT | 2 cut(s) | 1170, 1264 |