RLG00000020926

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016373
Physical Location & Seq
Reverse (-)
70168464 .. 70172314
3851 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020926

Sequence Viewer

Length: 2058 bp
ATGCTGCAGCTCACACCCTCTCACTCCCTCCCTCCACCACCACCACTTTCTCCCCAAAACCTCTCCTTTTCTCTCCTCCAGAGCTGCAAAACCCTACAAGAAGCAACCCAGCTCCACGCCCTGTCCCTCAAGACCGGAGCTTTCACCAACCCTTTAATCGCTTCCCGCCTCTTCTCTCTCTACGCCGACCCCAAAATCAACCACCTCACCTACGCCCGCTCCGTCTTCACTCAAATCCAAGACCCCAACTTGGTCTCCTGGAACGTCCTCATCAAATCCCACGTCACCAACCAACGCTCCCACGACGCCGTCGTTTTGTTCCGCGACTTGGTCCACCACCACGCGCCGGATAACTTCACGTTGCCGTGTGTGATCAAGGGCTGTGCGAGGCTGAATGCGGTGGAGGAAGGGAAGCAGATTCACGGGCTGGGCTTGAAAATTGGGCTGGGCTTGGATAAGTTTGTGCAGAGTAGCTTGGTGAGTATGTACTCCAAATGCGGTGAGATTGAGTTTGCACGGAAGGTGTTCGATGAAATGCGTGAGAGGGATTTGGTGGCGTGGAATGCGCTGATTGATGGGTATGCTAGGTGTGGGAGAGTTGATGTTGCAGTGGAGTTGTTTGATCAGATGGAGGAGAGGGATTTGTTTTCGTGGACGGTTTTGGTTGATGGGTTGTCGAAATGTGGGAATGTAGAGAAGGCTAGGGAGGTTTTTGATAGGATGCCGGATAAGAATTTGGTTTCTTGGAATGCCATGATCAATGGGTACATGAAAGCTAGGGACTTTGAGACGGCGAGGGAGTTGTTTAGTCAGATGGTGACTAGAGATGTGATAACATGGAATTCGATGATTGCTGGTTATGAGTTTAATGGGAGGTTTACGGAAGCGTTGGAGTTGTTTCGAGAGATTTTGGAAGAAGATCTTAGGCCTACTCCTGCTACATTGGTCAGTGTGCTTTCTGCTGTTTCGGGATTAGCTGCTTTAAGTAAGGGGAGATTGGTTCATTGTGTGATGGTGAAACATGGGTTTGAATTGGATGGTGTGCTTGGTACGTCGTTGATAGAAATGTATTATAAGTGTGGAAGCATTGACAGTGCAATGGCTGTGTTTCGAGGTATACAGAGGAAGAAAGTGGGGCATTGGACGGCTATAATTGTTGGTTTAGGAATGCATGGTATGGCTGACCAGGTTCTTCAGCTGTTTCTGGAAATGCGGAAAAATGGGATGGAGCCTCATGCTATAACTTTTATTGGAATCTTGAATGCATGTAGCCATGCTGGATTGGTCGATCTTGGACGTTACTATTTCAATATGATGATAAAGGATTATGGAATTGAACCCACAATTGAGCACTATGGTTGCTTTGTAGACATTTTATGTCGAGCTGGCTGTTTGGACGAGGCAAAGAATGTCATTGGGAGTATGCCAATGAAACCAAACAAAGTTATTTGGATGAGTTTACTTAGTGGTGCCCGGATCCATGGAAATGTTGAAATTGGTGATTATGCAGCTCAACATTTGATAGAGGTGTCTCCAGATACTATTGGATGCTACGTTGTGCTCTCTAACATGTATGCTGCAGCTGATCAGTGGGAGAAAGTTACACAGGTAAGAGAAATGATGAAAAAGAGAGGTGTCAAAAAGGACCCAGGATGTAGTAGCATAGAGCACAGAGGTATGCTTCATGAGTTTATTGTCGGTGACAAATCCCATCCTCAGACAAAAGAGATATATTCCAAGTTGAGTGAGGTGAGAGAGAAACTAAAATCTGCAGGACATGTTCCTGACACAAGCCAAGTTTTATTGTGTCTTGAGGATGAAAAGGAGAAGGAAGCTGAACTGGAAAACCATAGTGAGAGATTGGCTATTGCATTTGGTCTACTTAATTTGGAACCTAGGAGTGCTATTCGCATCATAAAGAATCTTCGTGTCTGTAATGATTGCCATTCTGTCACTAAACTCCTTTCCAAGATCTATAATCGTGAGATTGTTGTCAGAGATAATAGCCGTTTCCATCACTTTGCCAATGGGTCATGTTCTTGCAAAGATTTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR

Protein Analysis

686

Amino Acids

77.01

Weight (kDa)

6.82

Isoelectric Point (pI)

32.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 82 - 130 3e-06 PPR repeat family
PPR_1 PF12854 182 - 211 3.9e-09 PPR repeat
PPR_2 PF13041 183 - 214 3.6e-08 PPR repeat family
PPR PF01535 185 - 214 6e-09 PPR repeat
PPR PF01535 216 - 245 4.1e-07 PPR repeat
PPR_2 PF13041 245 - 276 2.2e-07 PPR repeat family
PPR PF01535 247 - 276 1.1e-07 PPR repeat
PPR_2 PF13041 275 - 321 9.3e-08 PPR repeat family
PPR PF01535 278 - 307 5.8e-07 PPR repeat
PPR_2 PF13041 378 - 424 1.8e-06 PPR repeat family
E_motif PF20431 494 - 556 1.7e-19 E motif
Eplus_motif PF20430 562 - 585 4.2e-09 E+ motif
DYW_deaminase PF14432 592 - 685 4.6e-38 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016373)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g41070
malus_domestica MD09G1122400.v1.1 MD17G1113300.v1.1
prunus_persica Prupe.3G201100_v2.0.a1
pyrus_communis pycom09g04680
rosa_chinensis RchiOBHm_Chr2g0156631
rosa_laevigata RLG00000020926
rosa_multiflora Rmu_co8328357.1_g000001
rosa_roxburghii Rroxscaffold_2G00092890
rosa_rugosa Rorug02G0454800
rosa_samantha Rh2AG520400 Rh2BG533400 Rh2CG505400 Rh2DG542200
rosa_wichuraiana Rw2G042940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1074
AccB1I GGYRCC 1 cut(s) 1469
AccBSI CCGCTC 1 cut(s) 219
AccI GTMKAC 3 cut(s) 1117, 1368, 1879
AccII CGCG 2 cut(s) 324, 344
AciI CCGC 6 cut(s) 166, 217, 322, 398, 498, 1213
AclWI GGATC 2 cut(s) 1471, 1484
AcsI RAATTY 2 cut(s) 733, 841
AcuI CTGAAG 1 cut(s) 1178
AcyI GRCGYC 1 cut(s) 306
AfaI GTAC 3 cut(s) 488, 767, 1051
AfiI CCNNNNNNNGG 3 cut(s) 250, 328, 346
AflIII ACRYGT 2 cut(s) 1569, 1777
AgsI TTSAA 6 cut(s) 436, 1031, 1261, 1309, 1337, 1493
AjiI CACGTC 1 cut(s) 283
AjnI CCWGG 3 cut(s) 257, 1185, 1648
Alw21I GWGCWC 3 cut(s) 1353, 1563, 1671
Alw26I GTCTC 3 cut(s) 259, 782, 1536
AlwI GGATC 2 cut(s) 1471, 1484
AoxI GGCC 1 cut(s) 926
ApeKI GCWGC 7 cut(s) 4, 7, 84, 977, 1508, 1577, 1580
ApoI RAATTY 2 cut(s) 733, 841
ArsI GACNNNNNNTTYG 2 cut(s) 267, 299
Asp700I GAANNNNTTC 1 cut(s) 524
AspA2I CCTAGG 1 cut(s) 1895
AspLEI GCGC 2 cut(s) 346, 568
AspS9I GGNCC 2 cut(s) 331, 1645
AsuC2I CCSGG 1 cut(s) 1474
AvaII GGWCC 2 cut(s) 331, 1645
AvrII CCTAGG 1 cut(s) 1895
BaeGI GKGCMC 1 cut(s) 1474
BamHI GGATCC 1 cut(s) 1476
BanI GGYRCC 1 cut(s) 1469
BbsI GAAGAC 1 cut(s) 217
Bbv12I GWGCWC 3 cut(s) 1353, 1563, 1671
BbvI GCAGC 6 cut(s) 19, 71, 964, 1520, 1564, 1592
BccI CCATC 9 cut(s) 569, 622, 662, 808, 1006, 1031, 1219, 1719, 2022
BceAI ACGGC 5 cut(s) 293, 349, 807, 1161, 1992
BciT130I CCWGG 3 cut(s) 259, 1187, 1650
BclI TGATCA 4 cut(s) 372, 622, 756, 1585
BcnI CCSGG 1 cut(s) 1474
BcoDI GTCTC 3 cut(s) 259, 782, 1536
BfaI CTAG 5 cut(s) 585, 702, 777, 822, 1896
BfmI CTRYAG 3 cut(s) 5, 1578, 1770
BglII AGATCT 2 cut(s) 919, 1971
BisI GCNGC 7 cut(s) 5, 8, 85, 978, 1509, 1578, 1581
BlnI CCTAGG 1 cut(s) 1895
BlsI GCNGC 7 cut(s) 6, 9, 86, 979, 1510, 1579, 1582
Bme1390I CCNGG 4 cut(s) 259, 1187, 1474, 1650
Bme18I GGWCC 2 cut(s) 331, 1645
BmgBI CACGTC 1 cut(s) 283
BmgT120I GGNCC 2 cut(s) 331, 1645
BmiI GGNNCC 5 cut(s) 1230, 1471, 1478, 1647, 1893
BmrFI CCNGG 4 cut(s) 259, 1187, 1474, 1650
BmsI GCATC 3 cut(s) 711, 1538, 1920
BpiI GAAGAC 1 cut(s) 217
BpmI CTGGAG 2 cut(s) 62, 1518
BpuEI CTTGAG 2 cut(s) 113, 1832
BpuMI CCSGG 1 cut(s) 1474
BsaHI GRCGYC 1 cut(s) 306
BsaI GGTCTC 1 cut(s) 259
BsaJI CCNNGG 3 cut(s) 1480, 1648, 1895
BsaWI WCCGGW 1 cut(s) 134
BsaXI ACNNNNNCTCC 6 cut(s) 203, 233, 239, 269, 281, 311
Bsc4I CCNNNNNNNGG 3 cut(s) 250, 328, 346
Bse1I ACTGG 1 cut(s) 1845
Bse3DI GCAATG 1 cut(s) 1104
BseBI CCWGG 3 cut(s) 259, 1187, 1650
BseDI CCNNGG 3 cut(s) 1480, 1648, 1895
BseGI GGATG 8 cut(s) 726, 1042, 1230, 1458, 1553, 1658, 1711, 1822
BseLI CCNNNNNNNGG 3 cut(s) 250, 328, 346
BseMI GCAATG 1 cut(s) 1104
BseMII CTCAG 1 cut(s) 1730
BseNI ACTGG 1 cut(s) 1845
BseRI GAGGAG 2 cut(s) 65, 647
BseSI GKGCMC 1 cut(s) 1474
BseXI GCAGC 6 cut(s) 19, 71, 964, 1520, 1564, 1592
BseYI CCCAGC 3 cut(s) 108, 427, 445
BsgI GTGCAG 1 cut(s) 485
Bsh1236I CGCG 2 cut(s) 324, 344
BshFI GGCC 1 cut(s) 928
BshNI GGYRCC 1 cut(s) 1469
BsiHKAI GWGCWC 3 cut(s) 1353, 1563, 1671
BsiSI CCGG 4 cut(s) 135, 347, 725, 1474
BslFI GGGAC 2 cut(s) 109, 794
BslI CCNNNNNNNGG 3 cut(s) 250, 328, 346
BsmAI GTCTC 3 cut(s) 259, 782, 1536
BsmBI CGTCTC 1 cut(s) 782
BsmFI GGGAC 2 cut(s) 109, 794
BsmI GAATGC 5 cut(s) 400, 568, 754, 1173, 1267
BsnI GGCC 1 cut(s) 928
Bso31I GGTCTC 1 cut(s) 259
Bsp1286I GDGCHC 4 cut(s) 1353, 1474, 1563, 1671
Bsp143I GATC 8 cut(s) 372, 622, 756, 919, 1288, 1476, 1585, 1971
Bsp19I CCATGG 1 cut(s) 1480
BspACI CCGC 6 cut(s) 166, 217, 322, 398, 498, 1213
BspANI GGCC 1 cut(s) 928
BspCNI CTCAG 1 cut(s) 1729
BspFNI CGCG 2 cut(s) 324, 344
BspHI TCATGA 1 cut(s) 1684
BspLI GGNNCC 5 cut(s) 1230, 1471, 1478, 1647, 1893
BspMAI CTGCAG 3 cut(s) 9, 1582, 1774
BspPI GGATC 2 cut(s) 1471, 1484
BspT107I GGYRCC 1 cut(s) 1469
BspTNI GGTCTC 1 cut(s) 259
BsrBI CCGCTC 1 cut(s) 219
BsrDI GCAATG 1 cut(s) 1104
BsrI ACTGG 1 cut(s) 1845
BssECI CCNNGG 3 cut(s) 1480, 1648, 1895
BssMI GATC 8 cut(s) 372, 622, 756, 919, 1288, 1476, 1585, 1971
BssNAI GTATAC 1 cut(s) 1118
BssNI GRCGYC 1 cut(s) 306
BssT1I CCWWGG 2 cut(s) 1480, 1895
Bst1107I GTATAC 1 cut(s) 1118
Bst2UI CCWGG 3 cut(s) 259, 1187, 1650
Bst4CI ACNGT 2 cut(s) 658, 1094
Bst6I CTCTTC 1 cut(s) 176
BstACI GRCGYC 1 cut(s) 306
BstC8I GCNNGC 2 cut(s) 217, 1387
BstDEI CTNAG 3 cut(s) 923, 1463, 1716
BstDSI CCRYGG 1 cut(s) 1480
BstF5I GGATG 8 cut(s) 726, 1042, 1230, 1458, 1553, 1658, 1711, 1822
BstFNI CGCG 2 cut(s) 324, 344
BstHHI GCGC 2 cut(s) 346, 568
BstKTI GATC 8 cut(s) 375, 625, 759, 922, 1291, 1479, 1588, 1974
BstMAI GTCTC 3 cut(s) 259, 782, 1536
BstMBI GATC 8 cut(s) 372, 622, 756, 919, 1288, 1476, 1585, 1971
BstMWI GCNNNNNNNGC 1 cut(s) 563
BstNI CCWGG 3 cut(s) 259, 1187, 1650
BstNSI RCATGY 3 cut(s) 1269, 1573, 1781
BstSCI CCNGG 4 cut(s) 257, 1185, 1472, 1648
BstSFI CTRYAG 3 cut(s) 5, 1578, 1770
BstSLI GKGCMC 1 cut(s) 1474
BstUI CGCG 2 cut(s) 324, 344
BstV1I GCAGC 6 cut(s) 19, 71, 964, 1520, 1564, 1592
BstV2I GAAGAC 1 cut(s) 217
BstX2I RGATCY 3 cut(s) 919, 1476, 1971
BstYI RGATCY 3 cut(s) 919, 1476, 1971
BstZ17I GTATAC 1 cut(s) 1118
BsuRI GGCC 1 cut(s) 928
BtgI CCRYGG 1 cut(s) 1480
BtrI CACGTC 1 cut(s) 283
BtsCI GGATG 8 cut(s) 726, 1042, 1230, 1458, 1553, 1658, 1711, 1822
BtsI GCAGTG 1 cut(s) 615
BtsIMutI CAGTG 4 cut(s) 615, 955, 1099, 1595
Cac8I GCNNGC 2 cut(s) 217, 1387
CciI TCATGA 1 cut(s) 1684
CfoI GCGC 2 cut(s) 346, 568
Cfr13I GGNCC 2 cut(s) 331, 1645
CseI GACGC 1 cut(s) 314
CsiI ACCWGGT 1 cut(s) 1185
Csp6I GTAC 3 cut(s) 487, 766, 1050
CviQI GTAC 3 cut(s) 487, 766, 1050
DdeI CTNAG 3 cut(s) 923, 1463, 1716
DpnI GATC 8 cut(s) 374, 624, 758, 921, 1290, 1478, 1587, 1973
DpnII GATC 8 cut(s) 372, 622, 756, 919, 1288, 1476, 1585, 1971
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
Eco130I CCWWGG 2 cut(s) 1480, 1895
Eco147I AGGCCT 1 cut(s) 928
Eco31I GGTCTC 1 cut(s) 259
Eco47I GGWCC 2 cut(s) 331, 1645
Eco57I CTGAAG 1 cut(s) 1178
EcoO109I RGGNCCY 1 cut(s) 1645
EcoRI GAATTC 1 cut(s) 841
EcoRII CCWGG 3 cut(s) 257, 1185, 1648
EcoT14I CCWWGG 2 cut(s) 1480, 1895
EcoT22I ATGCAT 2 cut(s) 1173, 1267
ErhI CCWWGG 2 cut(s) 1480, 1895
Esp3I CGTCTC 1 cut(s) 782
FalI AAGNNNNNCTT 2 cut(s) 906, 938
FaqI GGGAC 2 cut(s) 109, 794
FauI CCCGC 2 cut(s) 173, 224
FbaI TGATCA 4 cut(s) 372, 622, 756, 1585
FblI GTMKAC 3 cut(s) 1117, 1368, 1879
Fnu4HI GCNGC 7 cut(s) 5, 8, 85, 978, 1509, 1578, 1581
FokI GGATG 8 cut(s) 733, 1049, 1237, 1465, 1560, 1665, 1698, 1829
Fsp4HI GCNGC 7 cut(s) 5, 8, 85, 978, 1509, 1578, 1581
FspBI CTAG 5 cut(s) 585, 702, 777, 822, 1896
GlaI GCGC 2 cut(s) 345, 567
GluI GCNGC 7 cut(s) 5, 8, 85, 978, 1509, 1578, 1581
GsaI CCCAGC 3 cut(s) 112, 431, 449
GsuI CTGGAG 2 cut(s) 62, 1518
HaeIII GGCC 1 cut(s) 928
HapII CCGG 4 cut(s) 135, 347, 725, 1474
HgaI GACGC 1 cut(s) 314
HhaI GCGC 2 cut(s) 346, 568
Hin1I GRCGYC 1 cut(s) 306
Hin6I GCGC 2 cut(s) 344, 566
HinP1I GCGC 2 cut(s) 344, 566
HinfI GANTC 3 cut(s) 418, 1254, 1921
HpaII CCGG 4 cut(s) 135, 347, 725, 1474
Hpy166II GTNNAC 7 cut(s) 334, 654, 879, 1118, 1369, 1460, 1880
Hpy188I TCNGA 4 cut(s) 627, 813, 1719, 1997
Hpy8I GTNNAC 7 cut(s) 334, 654, 879, 1118, 1369, 1460, 1880
Hpy99I CGWCG 3 cut(s) 308, 314, 1057
HpyAV CCTTC 4 cut(s) 401, 514, 691, 1822
HpyCH4III ACNGT 2 cut(s) 658, 1094
HpyCH4IV ACGT 6 cut(s) 264, 282, 359, 1052, 1297, 1554
HpyF10VI GCNNNNNNNGC 1 cut(s) 563
HpyF3I CTNAG 3 cut(s) 923, 1463, 1716
HpySE526I ACGT 6 cut(s) 264, 282, 359, 1052, 1297, 1554
Hsp92I GRCGYC 1 cut(s) 306
HspAI GCGC 2 cut(s) 344, 566
Ksp22I TGATCA 4 cut(s) 372, 622, 756, 1585
Kzo9I GATC 8 cut(s) 372, 622, 756, 919, 1288, 1476, 1585, 1971
LmnI GCTCC 5 cut(s) 117, 137, 224, 302, 1228
Lsp1109I GCAGC 6 cut(s) 19, 71, 964, 1520, 1564, 1592
LweI GCATC 3 cut(s) 711, 1538, 1920
MabI ACCWGGT 1 cut(s) 1185
MaeI CTAG 5 cut(s) 585, 702, 777, 822, 1896
MaeII ACGT 6 cut(s) 264, 282, 359, 1052, 1297, 1554
MaeIII GTNAC 6 cut(s) 283, 817, 1298, 1600, 1700, 1951
MalI GATC 8 cut(s) 374, 624, 758, 921, 1290, 1478, 1587, 1973
MbiI CCGCTC 1 cut(s) 219
MboI GATC 8 cut(s) 372, 622, 756, 919, 1288, 1476, 1585, 1971
MboII GAAGA 7 cut(s) 163, 217, 926, 929, 1138, 1184, 1916
MfeI CAATTG 1 cut(s) 1344
MflI RGATCY 3 cut(s) 919, 1476, 1971
MhlI GDGCHC 4 cut(s) 1353, 1474, 1563, 1671
MluCI AATT 9 cut(s) 438, 733, 841, 1031, 1152, 1332, 1344, 1494, 1885
MmeI TCCRAC 1 cut(s) 870
Mph1103I ATGCAT 2 cut(s) 1173, 1267
MroXI GAANNNNTTC 1 cut(s) 524
MseI TTAA 4 cut(s) 155, 867, 983, 1884
MslI CAYNNNNRTG 1 cut(s) 1485
MspA1I CMGCKG 2 cut(s) 1198, 1583
MspI CCGG 4 cut(s) 135, 347, 725, 1474
MspR9I CCNGG 4 cut(s) 259, 1187, 1474, 1650
MunI CAATTG 1 cut(s) 1344
Mva1269I GAATGC 5 cut(s) 400, 568, 754, 1173, 1267
MvaI CCWGG 3 cut(s) 259, 1187, 1650
MvnI CGCG 2 cut(s) 324, 344
MwoI GCNNNNNNNGC 1 cut(s) 563
NciI CCSGG 1 cut(s) 1474
NcoI CCATGG 1 cut(s) 1480
NdeII GATC 8 cut(s) 372, 622, 756, 919, 1288, 1476, 1585, 1971
NlaIV GGNNCC 5 cut(s) 1230, 1471, 1478, 1647, 1893
NmuCI GTSAC 4 cut(s) 283, 817, 1700, 1951
NsiI ATGCAT 2 cut(s) 1173, 1267
NspI RCATGY 3 cut(s) 1269, 1573, 1781
PagI TCATGA 1 cut(s) 1684
PceI AGGCCT 1 cut(s) 928
PciI ACATGT 2 cut(s) 1569, 1777
PcsI WCGNNNNNNNCGW 2 cut(s) 219, 309
PctI GAATGC 5 cut(s) 400, 568, 754, 1173, 1267
PdmI GAANNNNTTC 1 cut(s) 524
PfeI GAWTC 3 cut(s) 418, 1254, 1921
PflFI GACNNNGTC 2 cut(s) 308, 329
PfoI TCCNGGA 1 cut(s) 257
PkrI GCNGC 7 cut(s) 6, 9, 86, 979, 1510, 1579, 1582
PpuMI RGGWCCY 1 cut(s) 1645
PscI ACATGT 2 cut(s) 1569, 1777
PsiI TTATAA 1 cut(s) 1074
Psp5II RGGWCCY 1 cut(s) 1645
Psp6I CCWGG 3 cut(s) 257, 1185, 1648
PspFI CCCAGC 3 cut(s) 108, 427, 445
PspGI CCWGG 3 cut(s) 257, 1185, 1648
PspN4I GGNNCC 5 cut(s) 1230, 1471, 1478, 1647, 1893
PspPI GGNCC 2 cut(s) 331, 1645
PspPPI RGGWCCY 1 cut(s) 1645
PstI CTGCAG 3 cut(s) 9, 1582, 1774
PsuI RGATCY 3 cut(s) 919, 1476, 1971
PsyI GACNNNGTC 2 cut(s) 308, 329
PvuII CAGCTG 2 cut(s) 1198, 1583
RsaI GTAC 3 cut(s) 488, 767, 1051
RsaNI GTAC 3 cut(s) 487, 766, 1050
RseI CAYNNNNRTG 1 cut(s) 1485
SaqAI TTAA 4 cut(s) 155, 867, 983, 1884
SatI GCNGC 7 cut(s) 5, 8, 85, 978, 1509, 1578, 1581
Sau3AI GATC 8 cut(s) 372, 622, 756, 919, 1288, 1476, 1585, 1971
Sau96I GGNCC 2 cut(s) 331, 1645
ScrFI CCNGG 4 cut(s) 259, 1187, 1474, 1650
SduI GDGCHC 4 cut(s) 1353, 1474, 1563, 1671
SexAI ACCWGGT 1 cut(s) 1185
SfaNI GCATC 3 cut(s) 711, 1538, 1920
SfcI CTRYAG 3 cut(s) 5, 1578, 1770
SinI GGWCC 2 cut(s) 331, 1645
SmiMI CAYNNNNRTG 1 cut(s) 1485
SmlI CTYRAG 2 cut(s) 128, 1811
SmoI CTYRAG 2 cut(s) 128, 1811
Sse9I AATT 9 cut(s) 438, 733, 841, 1031, 1152, 1332, 1344, 1494, 1885
SseBI AGGCCT 1 cut(s) 928
SsiI CCGC 6 cut(s) 166, 217, 322, 398, 498, 1213
SspMI CTAG 5 cut(s) 585, 702, 777, 822, 1896
StuI AGGCCT 1 cut(s) 928
StyD4I CCNGG 4 cut(s) 257, 1185, 1472, 1648
StyI CCWWGG 2 cut(s) 1480, 1895
TaaI ACNGT 2 cut(s) 658, 1094
TaiI ACGT 6 cut(s) 267, 285, 362, 1055, 1300, 1557
TaqI TCGA 7 cut(s) 528, 677, 845, 901, 1111, 1287, 1381
TasI AATT 9 cut(s) 438, 733, 841, 1031, 1152, 1332, 1344, 1494, 1885
TatI WGTACW 1 cut(s) 486
TfiI GAWTC 3 cut(s) 418, 1254, 1921
Tru1I TTAA 4 cut(s) 155, 867, 983, 1884
Tru9I TTAA 4 cut(s) 155, 867, 983, 1884
TscAI CASTG 4 cut(s) 615, 955, 1099, 1595
TseFI GTSAC 4 cut(s) 283, 817, 1700, 1951
TseI GCWGC 7 cut(s) 4, 7, 84, 977, 1508, 1577, 1580
Tsp45I GTSAC 4 cut(s) 283, 817, 1700, 1951
TspDTI ATGAA 7 cut(s) 546, 785, 992, 1445, 1637, 1673, 1833
TspGWI ACGGA 3 cut(s) 211, 532, 896
TspRI CASTG 4 cut(s) 615, 955, 1099, 1595
Tth111I GACNNNGTC 2 cut(s) 308, 329
VpaK11BI GGWCC 2 cut(s) 331, 1645
XapI RAATTY 2 cut(s) 733, 841
XceI RCATGY 3 cut(s) 1269, 1573, 1781
XmaJI CCTAGG 1 cut(s) 1895
XmiI GTMKAC 3 cut(s) 1117, 1368, 1879
XmnI GAANNNNTTC 1 cut(s) 524
XspI CTAG 5 cut(s) 585, 702, 777, 822, 1896
Zsp2I ATGCAT 2 cut(s) 1173, 1267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.