Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0017385

Physical Location & Seq

Genomic Coordinates Forward (+)

9713074 .. 9714914

Gene Structure 1841 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1125900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGTCTCATGTTATGGGAAAGAGCAGAGAGGAGCTTCTTGCTTTGGCTAAGGGGTCTGATGAAATCAAGAAAGAAGTTCCCATGCTTGTGGAGATTACATTGAAAGAAGTATGTGAAGAATCAAAGAAGAATCCAACTTCCAAATCATCGTCCCACTCAACTGCTGATGTTGCCAAAGGGTTGGTCCCAGGTGCTGTAAAGAAGGCATCCAATAAAAAGCAGATTAAGGACGAGACTAAAGTCAGTAAAGTGGAAGAAACTCAGGTTGACCGAAGCGTTGGAGAAAAAAAACTAAGGAGTTTAGTGGAAGAGGGACCTTCTATGACAGAACTATGTGGCTATAATTTCAAGAGGCAAGAGTTTGAAATTGAATATGACAATGATGCTGAGCAGATTCTGGCAGATATGGAATTCAAGGATACTGACACTAATGCTGACCGTGAATTGAAACTACGAGTTTTGCATGTCTACGCAAACCGCCTTGATGAGAGGAAACGTAGGAAGAATTTCGTACTTGAAAGAAATCTGCTTTACCCCGACCCTTTTGAGAAGGGCCTTGCACCTGAAGAAAGAGAAGTATACAAGCGTTTCAAAGTTTTCATGCGGTTCCACTCAAGTGAAGAGCACAAGGAATTGCTTAAGAATATCATTGAGGAACAACATATTGTCAAAAGAATACTGAATCTTCAGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0003700 GO:0003712 GO:0003713 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006996 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0031056 GO:0031058 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0035065 GO:0035066 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0140110 GO:1901983 GO:1901985 GO:1902275 GO:1902680 GO:1903506 GO:1903508 GO:1905269 GO:2000112 GO:2000756 GO:2000758 GO:2001141 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding ZZ

Protein Analysis

232

Amino Acids

26.82

Weight (kDa)

7.04

Isoelectric Point (pI)

50.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TADA2A-like_3rd	PF22941	111 - 180	2.3e-28	Transcriptional adapter 2-alpha-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017385)

Species	Orthologous Gene IDs
malus_domestica	MD09G1125900.v1.1
pyrus_communis	pycom09g05000
rosa_chinensis	RchiOBHm_Chr1g0367451 RchiOBHm_Chr1g0367461 RchiOBHm_Chr7g0232701
rosa_multiflora	Rmu_sc0023109.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005270 Rroxscaffold_1G00071670
rosa_samantha	Rh3DG331300 Rh4AG082800 Rh5DG469600 Rh7AG348500 Rh7AG348600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	468, 579
AciI	CCGC	2 cut(s)	478, 604
AcsI	RAATTY	2 cut(s)	410, 505
AcuI	CTGAAG	2 cut(s)	585, 671
AfaI	GTAC	1 cut(s)	513
AflII	CTTAAG	1 cut(s)	638
AgsI	TTSAA	8 cut(s)	103, 349, 365, 371, 415, 448, 518, 592
AjnI	CCWGG	1 cut(s)	187
AleI	CACNNNNGTG	1 cut(s)	615
AluBI	AGCT	1 cut(s)	34
AluI	AGCT	1 cut(s)	34
Alw21I	GWGCWC	1 cut(s)	627
Alw26I	GTCTC	2 cut(s)	9, 227
AlwNI	CAGNNNCTG	2 cut(s)	194, 397
AoxI	GGCC	1 cut(s)	553
ApoI	RAATTY	2 cut(s)	410, 505
ArsI	GACNNNNNNTTYG	2 cut(s)	168, 200
Asp700I	GAANNNNTTC	1 cut(s)	506
AspS9I	GGNCC	3 cut(s)	184, 314, 553
AvaII	GGWCC	2 cut(s)	184, 314
Bbv12I	GWGCWC	1 cut(s)	627
BciT130I	CCWGG	1 cut(s)	189
BciVI	GTATCC	1 cut(s)	412
BcoDI	GTCTC	2 cut(s)	9, 227
BfrI	CTTAAG	1 cut(s)	638
BfuI	GTATCC	1 cut(s)	412
BlpI	GCTNAGC	1 cut(s)	387
Bme1390I	CCNGG	1 cut(s)	189
Bme18I	GGWCC	2 cut(s)	184, 314
BmgT120I	GGNCC	3 cut(s)	184, 314, 553
BmiI	GGNNCC	3 cut(s)	186, 315, 608
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	2 cut(s)	215, 373
BoxI	GACNNNNGTC	1 cut(s)	239
Bpu10I	CCTNAGC	1 cut(s)	48
Bpu1102I	GCTNAGC	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	598
BsaJI	CCNNGG	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	1 cut(s)	206
BseMII	CTCAG	2 cut(s)	275, 378
BseRI	GAGGAG	1 cut(s)	44
BshFI	GGCC	1 cut(s)	555
BsiHKAI	GWGCWC	1 cut(s)	627
BslFI	GGGAC	3 cut(s)	136, 170, 327
BsmAI	GTCTC	2 cut(s)	9, 227
BsmFI	GGGAC	3 cut(s)	136, 170, 327
BsnI	GGCC	1 cut(s)	555
Bsp1286I	GDGCHC	1 cut(s)	627
Bsp1720I	GCTNAGC	1 cut(s)	387
BspACI	CCGC	2 cut(s)	478, 604
BspANI	GGCC	1 cut(s)	555
BspCNI	CTCAG	2 cut(s)	274, 379
BspLI	GGNNCC	3 cut(s)	186, 315, 608
BspQI	GCTCTTC	1 cut(s)	615
BspTI	CTTAAG	1 cut(s)	638
BssECI	CCNNGG	1 cut(s)	187
BssNAI	GTATAC	1 cut(s)	580
Bst1107I	GTATAC	1 cut(s)	580
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	1 cut(s)	440
Bst6I	CTCTTC	2 cut(s)	303, 615
BstAFI	CTTAAG	1 cut(s)	638
BstDEI	CTNAG	4 cut(s)	48, 261, 293, 387
BstF5I	GGATG	1 cut(s)	206
BstMAI	GTCTC	2 cut(s)	9, 227
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	189
BstNSI	RCATGY	1 cut(s)	467
BstPAI	GACNNNNGTC	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	187
BstXI	CCANNNNNNTGG	2 cut(s)	88, 181
BstZ17I	GTATAC	1 cut(s)	580
BsuI	GTATCC	1 cut(s)	412
BsuRI	GGCC	1 cut(s)	555
BtsCI	GGATG	1 cut(s)	206
CaiI	CAGNNNCTG	2 cut(s)	194, 397
Cfr13I	GGNCC	3 cut(s)	184, 314, 553
Csp6I	GTAC	1 cut(s)	512
CviAII	CATG	4 cut(s)	8, 82, 464, 601
CviJI	RGCY	4 cut(s)	34, 47, 339, 555
CviKI_1	RGCY	4 cut(s)	34, 47, 339, 555
CviQI	GTAC	1 cut(s)	512
DdeI	CTNAG	4 cut(s)	48, 261, 293, 387
Eam1104I	CTCTTC	2 cut(s)	303, 615
EarI	CTCTTC	2 cut(s)	303, 615
Eco47I	GGWCC	2 cut(s)	184, 314
Eco57I	CTGAAG	2 cut(s)	585, 671
EcoO109I	RGGNCCY	2 cut(s)	314, 553
EcoRI	GAATTC	1 cut(s)	410
EcoRII	CCWGG	1 cut(s)	187
FaeI	CATG	4 cut(s)	11, 85, 467, 604
FaqI	GGGAC	3 cut(s)	136, 170, 327
FatI	CATG	4 cut(s)	7, 81, 463, 600
FblI	GTMKAC	2 cut(s)	468, 579
FokI	GGATG	1 cut(s)	193
HaeIII	GGCC	1 cut(s)	555
Hin1II	CATG	4 cut(s)	11, 85, 467, 604
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	4 cut(s)	119, 130, 394, 682
Hpy166II	GTNNAC	3 cut(s)	268, 469, 580
Hpy188I	TCNGA	2 cut(s)	58, 695
Hpy188III	TCNNGA	2 cut(s)	67, 349
Hpy8I	GTNNAC	3 cut(s)	268, 469, 580
HpyAV	CCTTC	3 cut(s)	196, 327, 544
HpyCH4III	ACNGT	1 cut(s)	440
HpyCH4IV	ACGT	1 cut(s)	496
HpyCH4V	TGCA	2 cut(s)	463, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	4 cut(s)	48, 261, 293, 387
HpySE526I	ACGT	1 cut(s)	496
Hsp92II	CATG	4 cut(s)	11, 85, 467, 604
LguI	GCTCTTC	1 cut(s)	615
LmnI	GCTCC	1 cut(s)	31
LpnPI	CCDG	6 cut(s)	174, 201, 248, 383, 576, 674
LweI	GCATC	2 cut(s)	215, 373
MaeII	ACGT	1 cut(s)	496
MboII	GAAGA	8 cut(s)	128, 139, 266, 320, 514, 578, 632, 677
MhlI	GDGCHC	1 cut(s)	627
MluCI	AATT	6 cut(s)	343, 366, 410, 443, 505, 632
MmeI	TCCRAC	2 cut(s)	158, 259
MnlI	CCTC	5 cut(s)	22, 304, 345, 483, 646
MroXI	GAANNNNTTC	1 cut(s)	506
MseI	TTAA	2 cut(s)	225, 639
MslI	CAYNNNNRTG	2 cut(s)	86, 615
MspCI	CTTAAG	1 cut(s)	638
MspR9I	CCNGG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	170
NlaIII	CATG	4 cut(s)	11, 85, 467, 604
NlaIV	GGNNCC	3 cut(s)	186, 315, 608
NspI	RCATGY	1 cut(s)	467
OliI	CACNNNNGTG	1 cut(s)	615
PciSI	GCTCTTC	1 cut(s)	615
PdmI	GAANNNNTTC	1 cut(s)	506
PfeI	GAWTC	4 cut(s)	119, 130, 394, 682
PpuMI	RGGWCCY	1 cut(s)	314
PshAI	GACNNNNGTC	1 cut(s)	239
Psp5II	RGGWCCY	1 cut(s)	314
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	3 cut(s)	186, 315, 608
PspPI	GGNCC	3 cut(s)	184, 314, 553
PspPPI	RGGWCCY	1 cut(s)	314
PstNI	CAGNNNCTG	2 cut(s)	194, 397
RsaI	GTAC	1 cut(s)	513
RsaNI	GTAC	1 cut(s)	512
RseI	CAYNNNNRTG	2 cut(s)	86, 615
SapI	GCTCTTC	1 cut(s)	615
SaqAI	TTAA	2 cut(s)	225, 639
Sau96I	GGNCC	3 cut(s)	184, 314, 553
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	1 cut(s)	627
SetI	ASST	7 cut(s)	36, 193, 267, 319, 499, 565, 693
SfaNI	GCATC	2 cut(s)	215, 373
SinI	GGWCC	2 cut(s)	184, 314
SmiMI	CAYNNNNRTG	2 cut(s)	86, 615
SmlI	CTYRAG	2 cut(s)	613, 638
SmoI	CTYRAG	2 cut(s)	613, 638
Sse9I	AATT	6 cut(s)	343, 366, 410, 443, 505, 632
SsiI	CCGC	2 cut(s)	478, 604
StyD4I	CCNGG	1 cut(s)	187
TaaI	ACNGT	1 cut(s)	440
TaiI	ACGT	1 cut(s)	499
TaqII	GACCGA	1 cut(s)	285
TasI	AATT	6 cut(s)	343, 366, 410, 443, 505, 632
TfiI	GAWTC	4 cut(s)	119, 130, 394, 682
Tru1I	TTAA	2 cut(s)	225, 639
Tru9I	TTAA	2 cut(s)	225, 639
TspDTI	ATGAA	2 cut(s)	75, 589
Vha464I	CTTAAG	1 cut(s)	638
VpaK11BI	GGWCC	2 cut(s)	184, 314
XapI	RAATTY	2 cut(s)	410, 505
XceI	RCATGY	1 cut(s)	467
XmiI	GTMKAC	2 cut(s)	468, 579
XmnI	GAANNNNTTC	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.