Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0017385

Physical Location & Seq

Genomic Coordinates Forward (+)

92716173 .. 92727655

Gene Structure 11483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00071670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGTTAAGGACATGCAATTCATGTTATCAGTCACTTTCAATAACATTCGGAGCATTATAGATGCCAGAAGTAAAGGAACAAGCAGAACGAGAAACATTTACTATTCCGTCCCGAACAGCAAGTATCATAAGAAATCTGAAATGCCCACCCTTCTCGATGAGATTTGGAACCCCAACCCCAATCTCAAATGCCCACTCTTCTCTTTGAAAGGGATATCCTCCCCAGTCCTCATAACCTTGAGTTTGATCCTGAATACGATAACGATTCTCGAACAGTTATTGGCTGATATGGAATTTAAGGATAATGACACCGAGGATGAACGTGAGCTGAAGTTAAGAGTGCTGCCAATCTATTCAAAGAGGTACTTGGTCACTATAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0003700 GO:0003712 GO:0003713 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0031056 GO:0031058 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0035065 GO:0035066 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0140110 GO:1901983 GO:1901985 GO:1902275 GO:1902680 GO:1903506 GO:1903508 GO:1905269 GO:2000112 GO:2000756 GO:2000758 GO:2001141 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding ZZ

Protein Analysis

127

Amino Acids

14.73

Weight (kDa)

9.04

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TADA2A-like_3rd	PF22941	91 - 121	4.5e-06	Transcriptional adapter 2-alpha-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0017385)

Species	Orthologous Gene IDs
malus_domestica	MD09G1125900.v1.1
pyrus_communis	pycom09g05000
rosa_chinensis	RchiOBHm_Chr1g0367451 RchiOBHm_Chr1g0367461 RchiOBHm_Chr7g0232701
rosa_multiflora	Rmu_sc0023109.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005270 Rroxscaffold_1G00071670
rosa_samantha	Rh3DG331300 Rh4AG082800 Rh5DG469600 Rh7AG348500 Rh7AG348600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	241
AcsI	RAATTY	1 cut(s)	293
AcuI	CTGAAG	1 cut(s)	350
AfaI	GTAC	1 cut(s)	365
AgsI	TTSAA	3 cut(s)	40, 208, 357
AluBI	AGCT	1 cut(s)	328
AluI	AGCT	1 cut(s)	328
AlwI	GGATC	1 cut(s)	241
ApeKI	GCWGC	1 cut(s)	343
ApoI	RAATTY	1 cut(s)	293
BbvI	GCAGC	1 cut(s)	330
BisI	GCNGC	1 cut(s)	344
BlsI	GCNGC	1 cut(s)	345
BmiI	GGNNCC	1 cut(s)	170
BmrI	ACTGGG	1 cut(s)	218
BmsI	GCATC	1 cut(s)	52
BmuI	ACTGGG	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	312
Bse1I	ACTGG	1 cut(s)	224
BseDI	CCNNGG	1 cut(s)	312
BseGI	GGATG	1 cut(s)	322
BseNI	ACTGG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	330
BslFI	GGGAC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	95
Bsp143I	GATC	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	170
BspPI	GGATC	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	224
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	1 cut(s)	246
Bst4CI	ACNGT	1 cut(s)	276
Bst6I	CTCTTC	1 cut(s)	203
BstF5I	GGATG	1 cut(s)	322
BstKTI	GATC	1 cut(s)	249
BstMBI	GATC	1 cut(s)	246
BstNSI	RCATGY	1 cut(s)	16
BstV1I	GCAGC	1 cut(s)	330
BtsCI	GGATG	1 cut(s)	322
Csp6I	GTAC	1 cut(s)	364
CviAII	CATG	2 cut(s)	13, 22
CviJI	RGCY	2 cut(s)	284, 328
CviKI_1	RGCY	2 cut(s)	284, 328
CviQI	GTAC	1 cut(s)	364
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
Eco32I	GATATC	1 cut(s)	216
Eco57I	CTGAAG	1 cut(s)	350
EcoRV	GATATC	1 cut(s)	216
FaeI	CATG	2 cut(s)	16, 25
FaiI	YATR	7 cut(s)	14, 23, 59, 129, 233, 290, 377
FalI	AAGNNNNNCTT	2 cut(s)	350, 382
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	2 cut(s)	12, 21
Fnu4HI	GCNGC	1 cut(s)	344
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	1 cut(s)	344
GluI	GCNGC	1 cut(s)	344
Hin1II	CATG	2 cut(s)	16, 25
HinfI	GANTC	1 cut(s)	265
Hpy188I	TCNGA	2 cut(s)	51, 139
Hpy188III	TCNNGA	4 cut(s)	112, 155, 250, 269
HpyAV	CCTTC	1 cut(s)	161
HpyCH4III	ACNGT	1 cut(s)	276
HpyCH4IV	ACGT	1 cut(s)	322
HpyCH4V	TGCA	1 cut(s)	16
HpySE526I	ACGT	1 cut(s)	322
Hsp92II	CATG	2 cut(s)	16, 25
Kzo9I	GATC	1 cut(s)	246
LmnI	GCTCC	1 cut(s)	51
LpnPI	CCDG	3 cut(s)	79, 237, 263
Lsp1109I	GCAGC	1 cut(s)	330
LweI	GCATC	1 cut(s)	52
MaeII	ACGT	1 cut(s)	322
MaeIII	GTNAC	2 cut(s)	31, 370
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MboII	GAAGA	1 cut(s)	190
MluCI	AATT	2 cut(s)	17, 293
MnlI	CCTC	4 cut(s)	229, 239, 307, 354
MseI	TTAA	4 cut(s)	6, 297, 335, 382
NdeII	GATC	1 cut(s)	246
NlaIII	CATG	2 cut(s)	16, 25
NlaIV	GGNNCC	1 cut(s)	170
NmuCI	GTSAC	2 cut(s)	31, 370
NspI	RCATGY	1 cut(s)	16
PfeI	GAWTC	1 cut(s)	265
PkrI	GCNGC	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	170
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
SaqAI	TTAA	4 cut(s)	6, 297, 335, 382
SatI	GCNGC	1 cut(s)	344
Sau3AI	GATC	1 cut(s)	246
SetI	ASST	4 cut(s)	239, 325, 330, 365
SfaNI	GCATC	1 cut(s)	52
SmlI	CTYRAG	1 cut(s)	238
SmoI	CTYRAG	1 cut(s)	238
Sse9I	AATT	2 cut(s)	17, 293
TaaI	ACNGT	1 cut(s)	276
TaiI	ACGT	1 cut(s)	325
TaqI	TCGA	2 cut(s)	156, 270
TasI	AATT	2 cut(s)	17, 293
TfiI	GAWTC	1 cut(s)	265
Tru1I	TTAA	4 cut(s)	6, 297, 335, 382
Tru9I	TTAA	4 cut(s)	6, 297, 335, 382
TseFI	GTSAC	2 cut(s)	31, 370
TseI	GCWGC	1 cut(s)	343
Tsp45I	GTSAC	2 cut(s)	31, 370
TspDTI	ATGAA	2 cut(s)	10, 333
TspGWI	ACGGA	1 cut(s)	97
XapI	RAATTY	1 cut(s)	293
XceI	RCATGY	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.