Transcriptional adapter
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD09G1125900.v1.1 |
| pyrus_communis | pycom09g05000 |
| rosa_chinensis | RchiOBHm_Chr1g0367451 RchiOBHm_Chr1g0367461 RchiOBHm_Chr7g0232701 |
| rosa_multiflora | Rmu_sc0023109.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00005270 Rroxscaffold_1G00071670 |
| rosa_samantha | Rh3DG331300 Rh4AG082800 Rh5DG469600 Rh7AG348500 Rh7AG348600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 178 |
| AclWI | GGATC | 3 cut(s) | 70, 83, 280 |
| AcsI | RAATTY | 1 cut(s) | 229 |
| AcuI | CTGAAG | 1 cut(s) | 186 |
| AfaI | GTAC | 1 cut(s) | 115 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 16 |
| AflII | CTTAAG | 1 cut(s) | 86 |
| AgsI | TTSAA | 3 cut(s) | 41, 53, 143 |
| AluBI | AGCT | 2 cut(s) | 164, 237 |
| AluI | AGCT | 2 cut(s) | 164, 237 |
| AlwI | GGATC | 3 cut(s) | 70, 83, 280 |
| AoxI | GGCC | 1 cut(s) | 205 |
| ApoI | RAATTY | 1 cut(s) | 229 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 36 |
| AspS9I | GGNCC | 1 cut(s) | 206 |
| BamHI | GGATCC | 1 cut(s) | 75 |
| BceAI | ACGGC | 1 cut(s) | 96 |
| BfrI | CTTAAG | 1 cut(s) | 86 |
| BmgT120I | GGNCC | 1 cut(s) | 206 |
| BmiI | GGNNCC | 1 cut(s) | 77 |
| BmsI | GCATC | 1 cut(s) | 67 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 16 |
| Bse1I | ACTGG | 1 cut(s) | 243 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 16 |
| BseNI | ACTGG | 1 cut(s) | 243 |
| BshFI | GGCC | 1 cut(s) | 207 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 16 |
| BsnI | GGCC | 1 cut(s) | 207 |
| Bsp143I | GATC | 2 cut(s) | 75, 272 |
| BspACI | CCGC | 1 cut(s) | 178 |
| BspANI | GGCC | 1 cut(s) | 207 |
| BspLI | GGNNCC | 1 cut(s) | 77 |
| BspPI | GGATC | 3 cut(s) | 70, 83, 280 |
| BspQI | GCTCTTC | 2 cut(s) | 15, 48 |
| BspTI | CTTAAG | 1 cut(s) | 86 |
| BsrI | ACTGG | 1 cut(s) | 243 |
| BssMI | GATC | 2 cut(s) | 75, 272 |
| Bst4CI | ACNGT | 1 cut(s) | 285 |
| Bst6I | CTCTTC | 2 cut(s) | 15, 48 |
| BstAFI | CTTAAG | 1 cut(s) | 86 |
| BstC8I | GCNNGC | 1 cut(s) | 178 |
| BstKTI | GATC | 2 cut(s) | 78, 275 |
| BstMBI | GATC | 2 cut(s) | 75, 272 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 101, 182 |
| BstX2I | RGATCY | 1 cut(s) | 75 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 250 |
| BstYI | RGATCY | 1 cut(s) | 75 |
| BsuRI | GGCC | 1 cut(s) | 207 |
| BtsIMutI | CAGTG | 1 cut(s) | 250 |
| Cac8I | GCNNGC | 1 cut(s) | 178 |
| Cfr13I | GGNCC | 1 cut(s) | 206 |
| Csp6I | GTAC | 1 cut(s) | 114 |
| CviJI | RGCY | 4 cut(s) | 95, 164, 207, 237 |
| CviKI_1 | RGCY | 4 cut(s) | 95, 164, 207, 237 |
| CviQI | GTAC | 1 cut(s) | 114 |
| DpnI | GATC | 2 cut(s) | 77, 274 |
| DpnII | GATC | 2 cut(s) | 75, 272 |
| Eam1104I | CTCTTC | 2 cut(s) | 15, 48 |
| EarI | CTCTTC | 2 cut(s) | 15, 48 |
| Eco57I | CTGAAG | 1 cut(s) | 186 |
| FaiI | YATR | 6 cut(s) | 27, 257, 270, 293, 295, 313 |
| FauI | CCCGC | 1 cut(s) | 185 |
| HaeIII | GGCC | 1 cut(s) | 207 |
| Hpy188I | TCNGA | 3 cut(s) | 69, 277, 289 |
| HpyCH4III | ACNGT | 1 cut(s) | 285 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 101, 182 |
| Kzo9I | GATC | 2 cut(s) | 75, 272 |
| LguI | GCTCTTC | 2 cut(s) | 15, 48 |
| LpnPI | CCDG | 3 cut(s) | 90, 203, 256 |
| LweI | GCATC | 1 cut(s) | 67 |
| MaeIII | GTNAC | 1 cut(s) | 194 |
| MalI | GATC | 2 cut(s) | 77, 274 |
| MboI | GATC | 2 cut(s) | 75, 272 |
| MboII | GAAGA | 3 cut(s) | 32, 65, 179 |
| MflI | RGATCY | 1 cut(s) | 75 |
| MluCI | AATT | 2 cut(s) | 32, 229 |
| MnlI | CCTC | 2 cut(s) | 118, 193 |
| MroXI | GAANNNNTTC | 1 cut(s) | 36 |
| MseI | TTAA | 3 cut(s) | 87, 233, 302 |
| MspCI | CTTAAG | 1 cut(s) | 86 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 101, 182 |
| NdeII | GATC | 2 cut(s) | 75, 272 |
| NlaIV | GGNNCC | 1 cut(s) | 77 |
| NmuCI | GTSAC | 1 cut(s) | 194 |
| PciSI | GCTCTTC | 2 cut(s) | 15, 48 |
| PdmI | GAANNNNTTC | 1 cut(s) | 36 |
| PspN4I | GGNNCC | 1 cut(s) | 77 |
| PspPI | GGNCC | 1 cut(s) | 206 |
| PsuI | RGATCY | 1 cut(s) | 75 |
| RsaI | GTAC | 1 cut(s) | 115 |
| RsaNI | GTAC | 1 cut(s) | 114 |
| SapI | GCTCTTC | 2 cut(s) | 15, 48 |
| SaqAI | TTAA | 3 cut(s) | 87, 233, 302 |
| Sau3AI | GATC | 2 cut(s) | 75, 272 |
| Sau96I | GGNCC | 1 cut(s) | 206 |
| SetI | ASST | 4 cut(s) | 141, 166, 204, 239 |
| SfaNI | GCATC | 1 cut(s) | 67 |
| SmlI | CTYRAG | 1 cut(s) | 86 |
| SmoI | CTYRAG | 1 cut(s) | 86 |
| Sse9I | AATT | 2 cut(s) | 32, 229 |
| SsiI | CCGC | 1 cut(s) | 178 |
| TaaI | ACNGT | 1 cut(s) | 285 |
| TaqI | TCGA | 2 cut(s) | 61, 123 |
| TasI | AATT | 2 cut(s) | 32, 229 |
| Tru1I | TTAA | 3 cut(s) | 87, 233, 302 |
| Tru9I | TTAA | 3 cut(s) | 87, 233, 302 |
| TscAI | CASTG | 1 cut(s) | 250 |
| TseFI | GTSAC | 1 cut(s) | 194 |
| Tsp45I | GTSAC | 1 cut(s) | 194 |
| TspRI | CASTG | 1 cut(s) | 250 |
| Vha464I | CTTAAG | 1 cut(s) | 86 |
| XapI | RAATTY | 1 cut(s) | 229 |
| XmnI | GAANNNNTTC | 1 cut(s) | 36 |