Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0017385

Physical Location & Seq

Genomic Coordinates Reverse (-)

36757567 .. 36758518

Gene Structure 952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG331300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTTAACGCAACTCCCTCAAGAAATTCTTGATTTCCTTGGAGGTTTAGAAGAAGCCCGAAATGCTGGTTGCCGTACATCGTTCGAGGCAGATAGATACCTTGAACAGAAAAGGAAAAGAGAAGCTGAAGAAAATGCCCGCAGAGCAAGGGAAAGTGGCGAGGTTGGCCCAAGTTGTCAGGGAAATCCAAATTTAAGCTCCGCCAGTGCAATGGATATATTGGGTGTTTATGGATCAGATTTACTGTCTGAAGCTGAGAAACGTCTCTGCAGTGAAATGGGGTTACCCCCACCCTTTTACCTTAAGATGGAAGAAGTCATCTCAATTGAAATCTTCAGCGGCAATGTCACCAAAAGATCAGATGCCCATCACCTGTTCAAGATTGAACCTAGTAAAATTGACAGGGTCTACGGTCGACATGCTTGTGAAAAGGGGATTGCACAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0003700 GO:0003712 GO:0003713 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0031056 GO:0031058 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0035065 GO:0035066 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0140110 GO:1901983 GO:1901985 GO:1902275 GO:1902680 GO:1903506 GO:1903508 GO:1905269 GO:2000112 GO:2000756 GO:2000758 GO:2001141 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding ZZ

Protein Analysis

149

Amino Acids

16.61

Weight (kDa)

5.48

Isoelectric Point (pI)

64.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017385)

Species	Orthologous Gene IDs
malus_domestica	MD09G1125900.v1.1
pyrus_communis	pycom09g05000
rosa_chinensis	RchiOBHm_Chr1g0367451 RchiOBHm_Chr1g0367461 RchiOBHm_Chr7g0232701
rosa_multiflora	Rmu_sc0023109.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005270 Rroxscaffold_1G00071670
rosa_samantha	Rh3DG331300 Rh4AG082800 Rh5DG469600 Rh7AG348500 Rh7AG348600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	408, 415
AciI	CCGC	3 cut(s)	139, 201, 339
AclWI	GGATC	1 cut(s)	241
AcsI	RAATTY	2 cut(s)	24, 190
AcuI	CTGAAG	3 cut(s)	147, 270, 319
AfaI	GTAC	1 cut(s)	76
AfiI	CCNNNNNNNGG	1 cut(s)	307
AflII	CTTAAG	1 cut(s)	302
AgsI	TTSAA	4 cut(s)	104, 329, 379, 386
AluBI	AGCT	3 cut(s)	125, 198, 254
AluI	AGCT	3 cut(s)	125, 198, 254
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	1 cut(s)	241
AoxI	GGCC	1 cut(s)	166
ApoI	RAATTY	2 cut(s)	24, 190
AspS9I	GGNCC	1 cut(s)	167
AsuHPI	GGTGA	2 cut(s)	340, 362
BccI	CCATC	2 cut(s)	301, 375
BceAI	ACGGC	1 cut(s)	57
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	1 cut(s)	390
BfmI	CTRYAG	1 cut(s)	268
BfrI	CTTAAG	1 cut(s)	302
BisI	GCNGC	1 cut(s)	340
BlsI	GCNGC	1 cut(s)	341
BmgT120I	GGNCC	1 cut(s)	167
BmsI	GCATC	1 cut(s)	352
BsaBI	GATNNNNATC	1 cut(s)	366
BsaJI	CCNNGG	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse1I	ACTGG	1 cut(s)	204
Bse3DI	GCAATG	2 cut(s)	216, 349
Bse8I	GATNNNNATC	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	37
BseJI	GATNNNNATC	1 cut(s)	366
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMI	GCAATG	2 cut(s)	216, 349
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	1 cut(s)	204
Bsh1285I	CGRYCG	1 cut(s)	415
BshFI	GGCC	1 cut(s)	168
BsiEI	CGRYCG	1 cut(s)	415
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmAI	GTCTC	1 cut(s)	269
BsmBI	CGTCTC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	168
Bsp143I	GATC	2 cut(s)	233, 356
BspACI	CCGC	3 cut(s)	139, 201, 339
BspANI	GGCC	1 cut(s)	168
BspCNI	CTCAG	1 cut(s)	247
BspMAI	CTGCAG	1 cut(s)	272
BspPI	GGATC	1 cut(s)	241
BspTI	CTTAAG	1 cut(s)	302
BsrDI	GCAATG	2 cut(s)	216, 349
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	2 cut(s)	233, 356
BssT1I	CCWWGG	1 cut(s)	37
Bst4CI	ACNGT	3 cut(s)	246, 413, 444
BstAFI	CTTAAG	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	139
BstDEI	CTNAG	1 cut(s)	255
BstEII	GGTNACC	1 cut(s)	282
BstKTI	GATC	2 cut(s)	236, 359
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	2 cut(s)	233, 356
BstMCI	CGRYCG	1 cut(s)	415
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 143, 165
BstNSI	RCATGY	1 cut(s)	422
BstPI	GGTNACC	1 cut(s)	282
BstSFI	CTRYAG	1 cut(s)	268
BstXI	CCANNNNNNTGG	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	168
BtsI	GCAGTG	1 cut(s)	277
BtsIMutI	CAGTG	2 cut(s)	211, 277
Cac8I	GCNNGC	1 cut(s)	139
Cfr13I	GGNCC	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	75
CviAII	CATG	1 cut(s)	419
CviJI	RGCY	5 cut(s)	56, 125, 168, 198, 254
CviKI_1	RGCY	5 cut(s)	56, 125, 168, 198, 254
CviQI	GTAC	1 cut(s)	75
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	2 cut(s)	235, 358
DpnII	GATC	2 cut(s)	233, 356
EciI	GGCGGA	1 cut(s)	190
Eco130I	CCWWGG	1 cut(s)	37
Eco57I	CTGAAG	3 cut(s)	147, 270, 319
Eco91I	GGTNACC	1 cut(s)	282
EcoO65I	GGTNACC	1 cut(s)	282
EcoT14I	CCWWGG	1 cut(s)	37
ErhI	CCWWGG	1 cut(s)	37
Esp3I	CGTCTC	1 cut(s)	269
FaeI	CATG	1 cut(s)	422
FaiI	YATR	3 cut(s)	218, 231, 420
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FatI	CATG	1 cut(s)	418
FauI	CCCGC	1 cut(s)	146
FblI	GTMKAC	2 cut(s)	408, 415
Fnu4HI	GCNGC	1 cut(s)	340
Fsp4HI	GCNGC	1 cut(s)	340
FspBI	CTAG	1 cut(s)	390
GluI	GCNGC	1 cut(s)	340
HaeIII	GGCC	1 cut(s)	168
Hin1II	CATG	1 cut(s)	422
HincII	GTYRAC	2 cut(s)	6, 416
HindII	GTYRAC	2 cut(s)	6, 416
HpaI	GTTAAC	1 cut(s)	6
HphI	GGTGA	2 cut(s)	340, 362
Hpy166II	GTNNAC	3 cut(s)	6, 409, 416
Hpy188I	TCNGA	3 cut(s)	238, 250, 361
Hpy188III	TCNNGA	4 cut(s)	20, 29, 379, 447
Hpy8I	GTNNAC	3 cut(s)	6, 409, 416
HpyCH4III	ACNGT	3 cut(s)	246, 413, 444
HpyCH4IV	ACGT	1 cut(s)	262
HpyCH4V	TGCA	3 cut(s)	209, 270, 440
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 143, 165
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	1 cut(s)	262
Hsp92II	CATG	1 cut(s)	422
KspAI	GTTAAC	1 cut(s)	6
Kzo9I	GATC	2 cut(s)	233, 356
LmnI	GCTCC	1 cut(s)	203
LpnPI	CCDG	5 cut(s)	51, 164, 217, 386, 388
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	1 cut(s)	390
MaeII	ACGT	1 cut(s)	262
MaeIII	GTNAC	2 cut(s)	282, 346
MalI	GATC	2 cut(s)	235, 358
MboI	GATC	2 cut(s)	233, 356
MboII	GAAGA	4 cut(s)	62, 140, 323, 325
MfeI	CAATTG	1 cut(s)	324
MluCI	AATT	4 cut(s)	24, 190, 324, 396
MnlI	CCTC	4 cut(s)	27, 35, 79, 154
MseI	TTAA	3 cut(s)	5, 194, 303
MslI	CAYNNNNRTG	1 cut(s)	423
MspA1I	CMGCKG	1 cut(s)	339
MspCI	CTTAAG	1 cut(s)	302
MunI	CAATTG	1 cut(s)	324
MwoI	GCNNNNNNNGC	3 cut(s)	62, 143, 165
NdeII	GATC	2 cut(s)	233, 356
NlaIII	CATG	1 cut(s)	422
NmuCI	GTSAC	1 cut(s)	346
NspI	RCATGY	1 cut(s)	422
PflFI	GACNNNGTC	1 cut(s)	404
PkrI	GCNGC	1 cut(s)	341
PspEI	GGTNACC	1 cut(s)	282
PspPI	GGNCC	1 cut(s)	167
PstI	CTGCAG	1 cut(s)	272
PsyI	GACNNNGTC	1 cut(s)	404
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
RseI	CAYNNNNRTG	1 cut(s)	423
SalI	GTCGAC	1 cut(s)	414
SaqAI	TTAA	3 cut(s)	5, 194, 303
SatI	GCNGC	1 cut(s)	340
Sau3AI	GATC	2 cut(s)	233, 356
Sau96I	GGNCC	1 cut(s)	167
SfaNI	GCATC	1 cut(s)	352
SfcI	CTRYAG	1 cut(s)	268
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	2 cut(s)	18, 302
SmoI	CTYRAG	2 cut(s)	18, 302
Sse9I	AATT	4 cut(s)	24, 190, 324, 396
SsiI	CCGC	3 cut(s)	139, 201, 339
SspMI	CTAG	1 cut(s)	390
StyI	CCWWGG	1 cut(s)	37
TaaI	ACNGT	3 cut(s)	246, 413, 444
TaiI	ACGT	1 cut(s)	265
TaqI	TCGA	2 cut(s)	84, 415
TasI	AATT	4 cut(s)	24, 190, 324, 396
TauI	GCSGC	1 cut(s)	342
Tru1I	TTAA	3 cut(s)	5, 194, 303
Tru9I	TTAA	3 cut(s)	5, 194, 303
TscAI	CASTG	2 cut(s)	211, 277
TseFI	GTSAC	1 cut(s)	346
Tsp45I	GTSAC	1 cut(s)	346
TspRI	CASTG	2 cut(s)	211, 277
Tth111I	GACNNNGTC	1 cut(s)	404
Vha464I	CTTAAG	1 cut(s)	302
XapI	RAATTY	2 cut(s)	24, 190
XceI	RCATGY	1 cut(s)	422
XmiI	GTMKAC	2 cut(s)	408, 415
XspI	CTAG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.