Transcriptional adapter
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD09G1125900.v1.1 |
| pyrus_communis | pycom09g05000 |
| rosa_chinensis | RchiOBHm_Chr1g0367451 RchiOBHm_Chr1g0367461 RchiOBHm_Chr7g0232701 |
| rosa_multiflora | Rmu_sc0023109.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00005270 Rroxscaffold_1G00071670 |
| rosa_samantha | Rh3DG331300 Rh4AG082800 Rh5DG469600 Rh7AG348500 Rh7AG348600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 70 |
| AccI | GTMKAC | 2 cut(s) | 147, 258 |
| AciI | CCGC | 2 cut(s) | 70, 283 |
| AcsI | RAATTY | 2 cut(s) | 89, 184 |
| AcuI | CTGAAG | 1 cut(s) | 264 |
| AfeI | AGCGCT | 1 cut(s) | 266 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 226 |
| AflII | CTTAAG | 1 cut(s) | 317 |
| AgsI | TTSAA | 7 cut(s) | 28, 44, 50, 94, 127, 197, 271 |
| AleI | CACNNNNGTG | 1 cut(s) | 294 |
| Alw21I | GWGCWC | 1 cut(s) | 306 |
| Aor51HI | AGCGCT | 1 cut(s) | 266 |
| AoxI | GGCC | 1 cut(s) | 232 |
| ApoI | RAATTY | 2 cut(s) | 89, 184 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 185 |
| AspLEI | GCGC | 1 cut(s) | 267 |
| AspS9I | GGNCC | 1 cut(s) | 232 |
| Bbv12I | GWGCWC | 1 cut(s) | 306 |
| BceAI | ACGGC | 1 cut(s) | 173 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 44, 78 |
| BciVI | GTATCC | 1 cut(s) | 91 |
| BfoI | RGCGCY | 1 cut(s) | 268 |
| BfrI | CTTAAG | 1 cut(s) | 317 |
| BfuI | GTATCC | 1 cut(s) | 91 |
| BlpI | GCTNAGC | 1 cut(s) | 66 |
| BmgT120I | GGNCC | 1 cut(s) | 232 |
| BmiI | GGNNCC | 1 cut(s) | 287 |
| BmsI | GCATC | 1 cut(s) | 52 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 66 |
| BpuEI | CTTGAG | 1 cut(s) | 277 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 226 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 226 |
| BseMII | CTCAG | 1 cut(s) | 57 |
| BseRI | GAGGAG | 1 cut(s) | 242 |
| BshFI | GGCC | 1 cut(s) | 234 |
| BsiHKAI | GWGCWC | 1 cut(s) | 306 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 226 |
| BsnI | GGCC | 1 cut(s) | 234 |
| Bsp1286I | GDGCHC | 1 cut(s) | 306 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 66 |
| BspACI | CCGC | 2 cut(s) | 70, 283 |
| BspANI | GGCC | 1 cut(s) | 234 |
| BspCNI | CTCAG | 1 cut(s) | 58 |
| BspLI | GGNNCC | 1 cut(s) | 287 |
| BspQI | GCTCTTC | 1 cut(s) | 294 |
| BspTI | CTTAAG | 1 cut(s) | 317 |
| BsrBI | CCGCTC | 1 cut(s) | 70 |
| BssNAI | GTATAC | 1 cut(s) | 259 |
| Bst1107I | GTATAC | 1 cut(s) | 259 |
| Bst4CI | ACNGT | 1 cut(s) | 119 |
| Bst6I | CTCTTC | 1 cut(s) | 294 |
| BstAFI | CTTAAG | 1 cut(s) | 317 |
| BstDEI | CTNAG | 1 cut(s) | 66 |
| BstH2I | RGCGCY | 1 cut(s) | 268 |
| BstHHI | GCGC | 1 cut(s) | 267 |
| BstNSI | RCATGY | 1 cut(s) | 146 |
| BstZ17I | GTATAC | 1 cut(s) | 259 |
| BsuI | GTATCC | 1 cut(s) | 91 |
| BsuRI | GGCC | 1 cut(s) | 234 |
| CfoI | GCGC | 1 cut(s) | 267 |
| Cfr13I | GGNCC | 1 cut(s) | 232 |
| CviAII | CATG | 2 cut(s) | 143, 280 |
| CviJI | RGCY | 3 cut(s) | 18, 160, 234 |
| CviKI_1 | RGCY | 3 cut(s) | 18, 160, 234 |
| DdeI | CTNAG | 1 cut(s) | 66 |
| Eam1104I | CTCTTC | 1 cut(s) | 294 |
| EarI | CTCTTC | 1 cut(s) | 294 |
| Eco47III | AGCGCT | 1 cut(s) | 266 |
| Eco57I | CTGAAG | 1 cut(s) | 264 |
| EcoO109I | RGGNCCY | 1 cut(s) | 232 |
| EcoRI | GAATTC | 1 cut(s) | 89 |
| FaeI | CATG | 2 cut(s) | 146, 283 |
| FaiI | YATR | 6 cut(s) | 21, 86, 144, 191, 259, 281 |
| FatI | CATG | 2 cut(s) | 142, 279 |
| FblI | GTMKAC | 2 cut(s) | 147, 258 |
| GlaI | GCGC | 1 cut(s) | 266 |
| HaeII | RGCGCY | 1 cut(s) | 268 |
| HaeIII | GGCC | 1 cut(s) | 234 |
| HhaI | GCGC | 1 cut(s) | 267 |
| Hin1II | CATG | 2 cut(s) | 146, 283 |
| Hin6I | GCGC | 1 cut(s) | 265 |
| HinP1I | GCGC | 1 cut(s) | 265 |
| HinfI | GANTC | 1 cut(s) | 73 |
| Hpy166II | GTNNAC | 2 cut(s) | 148, 259 |
| Hpy188III | TCNNGA | 1 cut(s) | 28 |
| Hpy8I | GTNNAC | 2 cut(s) | 148, 259 |
| HpyCH4III | ACNGT | 1 cut(s) | 119 |
| HpyCH4IV | ACGT | 1 cut(s) | 175 |
| HpyCH4V | TGCA | 1 cut(s) | 142 |
| HpyF3I | CTNAG | 1 cut(s) | 66 |
| HpySE526I | ACGT | 1 cut(s) | 175 |
| Hsp92II | CATG | 2 cut(s) | 146, 283 |
| HspAI | GCGC | 1 cut(s) | 265 |
| LguI | GCTCTTC | 1 cut(s) | 294 |
| LpnPI | CCDG | 2 cut(s) | 62, 255 |
| LweI | GCATC | 1 cut(s) | 52 |
| MaeII | ACGT | 1 cut(s) | 175 |
| MbiI | CCGCTC | 1 cut(s) | 70 |
| MboII | GAAGA | 3 cut(s) | 193, 257, 311 |
| MhlI | GDGCHC | 1 cut(s) | 306 |
| MluCI | AATT | 7 cut(s) | 8, 22, 45, 89, 122, 184, 311 |
| MnlI | CCTC | 6 cut(s) | 24, 162, 220, 223, 245, 325 |
| MroXI | GAANNNNTTC | 1 cut(s) | 185 |
| MseI | TTAA | 2 cut(s) | 11, 318 |
| MslI | CAYNNNNRTG | 1 cut(s) | 294 |
| MspCI | CTTAAG | 1 cut(s) | 317 |
| NlaIII | CATG | 2 cut(s) | 146, 283 |
| NlaIV | GGNNCC | 1 cut(s) | 287 |
| NspI | RCATGY | 1 cut(s) | 146 |
| OliI | CACNNNNGTG | 1 cut(s) | 294 |
| PciSI | GCTCTTC | 1 cut(s) | 294 |
| PdmI | GAANNNNTTC | 1 cut(s) | 185 |
| PfeI | GAWTC | 1 cut(s) | 73 |
| PspN4I | GGNNCC | 1 cut(s) | 287 |
| PspPI | GGNCC | 1 cut(s) | 232 |
| RseI | CAYNNNNRTG | 1 cut(s) | 294 |
| SapI | GCTCTTC | 1 cut(s) | 294 |
| SaqAI | TTAA | 2 cut(s) | 11, 318 |
| Sau96I | GGNCC | 1 cut(s) | 232 |
| SduI | GDGCHC | 1 cut(s) | 306 |
| SetI | ASST | 2 cut(s) | 178, 244 |
| SfaNI | GCATC | 1 cut(s) | 52 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 294 |
| SmlI | CTYRAG | 2 cut(s) | 292, 317 |
| SmoI | CTYRAG | 2 cut(s) | 292, 317 |
| Sse9I | AATT | 7 cut(s) | 8, 22, 45, 89, 122, 184, 311 |
| SsiI | CCGC | 2 cut(s) | 70, 283 |
| TaaI | ACNGT | 1 cut(s) | 119 |
| TaiI | ACGT | 1 cut(s) | 178 |
| TasI | AATT | 7 cut(s) | 8, 22, 45, 89, 122, 184, 311 |
| TfiI | GAWTC | 1 cut(s) | 73 |
| Tru1I | TTAA | 2 cut(s) | 11, 318 |
| Tru9I | TTAA | 2 cut(s) | 11, 318 |
| TspDTI | ATGAA | 2 cut(s) | 178, 268 |
| Vha464I | CTTAAG | 1 cut(s) | 317 |
| XapI | RAATTY | 2 cut(s) | 89, 184 |
| XceI | RCATGY | 1 cut(s) | 146 |
| XmiI | GTMKAC | 2 cut(s) | 147, 258 |
| XmnI | GAANNNNTTC | 1 cut(s) | 185 |