Transcriptional adapter
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD09G1125900.v1.1 |
| pyrus_communis | pycom09g05000 |
| rosa_chinensis | RchiOBHm_Chr1g0367451 RchiOBHm_Chr1g0367461 RchiOBHm_Chr7g0232701 |
| rosa_multiflora | Rmu_sc0023109.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00005270 Rroxscaffold_1G00071670 |
| rosa_samantha | Rh3DG331300 Rh4AG082800 Rh5DG469600 Rh7AG348500 Rh7AG348600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 187 |
| AclWI | GGATC | 3 cut(s) | 54, 67, 158 |
| AcsI | RAATTY | 1 cut(s) | 311 |
| AcuI | CTGAAG | 1 cut(s) | 368 |
| AfaI | GTAC | 1 cut(s) | 383 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 41, 80 |
| AgsI | TTSAA | 2 cut(s) | 108, 375 |
| AleI | CACNNNNGTG | 1 cut(s) | 146 |
| AluBI | AGCT | 2 cut(s) | 200, 346 |
| AluI | AGCT | 2 cut(s) | 200, 346 |
| AlwI | GGATC | 3 cut(s) | 54, 67, 158 |
| ApeKI | GCWGC | 1 cut(s) | 361 |
| ApoI | RAATTY | 1 cut(s) | 311 |
| AspLEI | GCGC | 1 cut(s) | 140 |
| AsuHPI | GGTGA | 3 cut(s) | 163, 173, 207 |
| AsuNHI | GCTAGC | 1 cut(s) | 200 |
| BamHI | GGATCC | 1 cut(s) | 59 |
| BbvI | GCAGC | 1 cut(s) | 348 |
| BccI | CCATC | 3 cut(s) | 12, 74, 176 |
| BfaI | CTAG | 1 cut(s) | 201 |
| BfoI | RGCGCY | 1 cut(s) | 141 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 184 |
| BisI | GCNGC | 1 cut(s) | 362 |
| BlsI | GCNGC | 1 cut(s) | 363 |
| BmiI | GGNNCC | 2 cut(s) | 33, 61 |
| BmtI | GCTAGC | 1 cut(s) | 204 |
| BpuEI | CTTGAG | 1 cut(s) | 406 |
| BsaJI | CCNNGG | 1 cut(s) | 330 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 41, 80 |
| Bse3DI | GCAATG | 1 cut(s) | 211 |
| BseDI | CCNNGG | 1 cut(s) | 330 |
| BseGI | GGATG | 2 cut(s) | 23, 340 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 41, 80 |
| BseMI | GCAATG | 1 cut(s) | 211 |
| BseXI | GCAGC | 1 cut(s) | 348 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 41, 80 |
| Bsp143I | GATC | 4 cut(s) | 59, 163, 192, 427 |
| BspACI | CCGC | 1 cut(s) | 187 |
| BspLI | GGNNCC | 2 cut(s) | 33, 61 |
| BspOI | GCTAGC | 1 cut(s) | 204 |
| BspPI | GGATC | 3 cut(s) | 54, 67, 158 |
| BsrDI | GCAATG | 1 cut(s) | 211 |
| BssECI | CCNNGG | 1 cut(s) | 330 |
| BssMI | GATC | 4 cut(s) | 59, 163, 192, 427 |
| BstC8I | GCNNGC | 1 cut(s) | 202 |
| BstF5I | GGATG | 2 cut(s) | 23, 340 |
| BstH2I | RGCGCY | 1 cut(s) | 141 |
| BstHHI | GCGC | 1 cut(s) | 140 |
| BstKTI | GATC | 4 cut(s) | 62, 166, 195, 430 |
| BstMBI | GATC | 4 cut(s) | 59, 163, 192, 427 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 184 |
| BstV1I | GCAGC | 1 cut(s) | 348 |
| BstX2I | RGATCY | 1 cut(s) | 59 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 148 |
| BstYI | RGATCY | 1 cut(s) | 59 |
| BtsCI | GGATG | 2 cut(s) | 23, 340 |
| Cac8I | GCNNGC | 1 cut(s) | 202 |
| CfoI | GCGC | 1 cut(s) | 140 |
| Csp6I | GTAC | 1 cut(s) | 382 |
| CviJI | RGCY | 6 cut(s) | 14, 156, 200, 302, 346, 395 |
| CviKI_1 | RGCY | 6 cut(s) | 14, 156, 200, 302, 346, 395 |
| CviQI | GTAC | 1 cut(s) | 382 |
| DpnI | GATC | 4 cut(s) | 61, 165, 194, 429 |
| DpnII | GATC | 4 cut(s) | 59, 163, 192, 427 |
| EciI | GGCGGA | 1 cut(s) | 202 |
| Eco57I | CTGAAG | 1 cut(s) | 368 |
| FaiI | YATR | 8 cut(s) | 42, 89, 91, 93, 95, 282, 308, 399 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 368, 400 |
| Fnu4HI | GCNGC | 1 cut(s) | 362 |
| FokI | GGATG | 2 cut(s) | 30, 347 |
| Fsp4HI | GCNGC | 1 cut(s) | 362 |
| FspBI | CTAG | 1 cut(s) | 201 |
| GlaI | GCGC | 1 cut(s) | 139 |
| GluI | GCNGC | 1 cut(s) | 362 |
| HaeII | RGCGCY | 1 cut(s) | 141 |
| HhaI | GCGC | 1 cut(s) | 140 |
| Hin6I | GCGC | 1 cut(s) | 138 |
| HinP1I | GCGC | 1 cut(s) | 138 |
| HinfI | GANTC | 1 cut(s) | 416 |
| HphI | GGTGA | 3 cut(s) | 163, 173, 207 |
| Hpy188I | TCNGA | 3 cut(s) | 36, 64, 292 |
| Hpy188III | TCNNGA | 1 cut(s) | 265 |
| HpyCH4IV | ACGT | 2 cut(s) | 129, 340 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 184 |
| HpySE526I | ACGT | 2 cut(s) | 129, 340 |
| HspAI | GCGC | 1 cut(s) | 138 |
| Kzo9I | GATC | 4 cut(s) | 59, 163, 192, 427 |
| LpnPI | CCDG | 3 cut(s) | 87, 148, 278 |
| Lsp1109I | GCAGC | 1 cut(s) | 348 |
| MaeI | CTAG | 1 cut(s) | 201 |
| MaeII | ACGT | 2 cut(s) | 129, 340 |
| MaeIII | GTNAC | 2 cut(s) | 130, 213 |
| MalI | GATC | 4 cut(s) | 61, 165, 194, 429 |
| MboI | GATC | 4 cut(s) | 59, 163, 192, 427 |
| MboII | GAAGA | 1 cut(s) | 202 |
| MflI | RGATCY | 1 cut(s) | 59 |
| MluCI | AATT | 2 cut(s) | 293, 311 |
| MlyI | GAGTC | 1 cut(s) | 425 |
| MnlI | CCTC | 6 cut(s) | 145, 184, 325, 372, 381, 385 |
| MseI | TTAA | 2 cut(s) | 315, 353 |
| MslI | CAYNNNNRTG | 1 cut(s) | 146 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 184 |
| NdeII | GATC | 4 cut(s) | 59, 163, 192, 427 |
| NheI | GCTAGC | 1 cut(s) | 200 |
| NlaIV | GGNNCC | 2 cut(s) | 33, 61 |
| NmuCI | GTSAC | 1 cut(s) | 213 |
| OliI | CACNNNNGTG | 1 cut(s) | 146 |
| PkrI | GCNGC | 1 cut(s) | 363 |
| PleI | GAGTC | 1 cut(s) | 424 |
| PpsI | GAGTC | 1 cut(s) | 424 |
| PspN4I | GGNNCC | 2 cut(s) | 33, 61 |
| PsuI | RGATCY | 1 cut(s) | 59 |
| RsaI | GTAC | 1 cut(s) | 383 |
| RsaNI | GTAC | 1 cut(s) | 382 |
| RseI | CAYNNNNRTG | 1 cut(s) | 146 |
| SaqAI | TTAA | 2 cut(s) | 315, 353 |
| SatI | GCNGC | 1 cut(s) | 362 |
| Sau3AI | GATC | 4 cut(s) | 59, 163, 192, 427 |
| SchI | GAGTC | 1 cut(s) | 425 |
| SetI | ASST | 8 cut(s) | 10, 132, 150, 176, 202, 343, 348, 383 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 146 |
| SmlI | CTYRAG | 1 cut(s) | 385 |
| SmoI | CTYRAG | 1 cut(s) | 385 |
| Sse9I | AATT | 2 cut(s) | 293, 311 |
| SsiI | CCGC | 1 cut(s) | 187 |
| SspMI | CTAG | 1 cut(s) | 201 |
| TaiI | ACGT | 2 cut(s) | 132, 343 |
| TasI | AATT | 2 cut(s) | 293, 311 |
| Tru1I | TTAA | 2 cut(s) | 315, 353 |
| Tru9I | TTAA | 2 cut(s) | 315, 353 |
| TseFI | GTSAC | 1 cut(s) | 213 |
| TseI | GCWGC | 1 cut(s) | 361 |
| Tsp45I | GTSAC | 1 cut(s) | 213 |
| TspDTI | ATGAA | 1 cut(s) | 351 |
| TspGWI | ACGGA | 1 cut(s) | 250 |
| XapI | RAATTY | 1 cut(s) | 311 |
| XspI | CTAG | 1 cut(s) | 201 |