Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023109.1

Orthogroup ID

OG0017385

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1994

Gene Structure 1994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023109.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgtggtggataggatttgtattccgaaatgaatgccgtagggatatcctccccagtcctcataaccttgagtttgatcttgaatacgataacgattctgaacagttattggatgatatggaatttaaggataatgacactgaggatgaacgtgagctgaagttaagagtgctgccaatctattcaaagagacttgatgagaggaagtgtagaaaggatttcatactagaaagaaatttattatatccaaatccttttgaaaaggacttatctccggaagaaaaggcgatatgtcgacgttatgatgtcttcatgtgcttccactacaaggaagagcatacagaattacttcaaactattattggagagcatcgaactctgaaaaggatccaagaacttaaggaagcccgaaatgctggttgccgtacatcgttcgaggcagatagataccttgaacagaaaaggaaaagagaagctgaagaaaatgcccgcagagcaagggaaagtggcgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0003700 GO:0003712 GO:0003713 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0031056 GO:0031058 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0035065 GO:0035066 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0140110 GO:1901983 GO:1901985 GO:1902275 GO:1902680 GO:1903506 GO:1903508 GO:1905269 GO:2000112 GO:2000756 GO:2000758 GO:2001141 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding ZZ

Protein Analysis

171

Amino Acids

20.94

Weight (kDa)

5.35

Isoelectric Point (pI)

63.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017385)

Species	Orthologous Gene IDs
malus_domestica	MD09G1125900.v1.1
pyrus_communis	pycom09g05000
rosa_chinensis	RchiOBHm_Chr1g0367451 RchiOBHm_Chr1g0367461 RchiOBHm_Chr7g0232701
rosa_multiflora	Rmu_sc0023109.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005270 Rroxscaffold_1G00071670
rosa_samantha	Rh3DG331300 Rh4AG082800 Rh5DG469600 Rh7AG348500 Rh7AG348600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	295
AccIII	TCCGGA	1 cut(s)	274
AciI	CCGC	1 cut(s)	490
AclWI	GGATC	2 cut(s)	382, 395
AcsI	RAATTY	2 cut(s)	122, 235
AcuI	CTGAAG	2 cut(s)	179, 498
AfaI	GTAC	1 cut(s)	427
AfiI	CCNNNNNNNGG	1 cut(s)	328
AflII	CTTAAG	1 cut(s)	398
AgsI	TTSAA	5 cut(s)	83, 186, 260, 353, 455
AluBI	AGCT	2 cut(s)	157, 476
AluI	AGCT	2 cut(s)	157, 476
Alw26I	GTCTC	1 cut(s)	184
AlwI	GGATC	2 cut(s)	382, 395
Aor13HI	TCCGGA	1 cut(s)	274
ApeKI	GCWGC	1 cut(s)	172
ApoI	RAATTY	2 cut(s)	122, 235
Asp700I	GAANNNNTTC	1 cut(s)	348
BamHI	GGATCC	1 cut(s)	387
BbsI	GAAGAC	1 cut(s)	301
BbvI	GCAGC	1 cut(s)	159
BceAI	ACGGC	2 cut(s)	21, 408
BcgI	CGANNNNNNTGC	2 cut(s)	15, 49
BcoDI	GTCTC	1 cut(s)	184
BfaI	CTAG	1 cut(s)	227
BfrI	CTTAAG	1 cut(s)	398
BisI	GCNGC	1 cut(s)	173
BlsI	GCNGC	1 cut(s)	174
BmiI	GGNNCC	1 cut(s)	389
BmrI	ACTGGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	379
BmuI	ACTGGG	1 cut(s)	48
BpiI	GAAGAC	1 cut(s)	301
BpuEI	CTTGAG	1 cut(s)	89
BsaWI	WCCGGW	1 cut(s)	274
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse1I	ACTGG	1 cut(s)	54
BseAI	TCCGGA	1 cut(s)	274
BseGI	GGATG	2 cut(s)	118, 151
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	54
BseXI	GCAGC	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	275
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmAI	GTCTC	1 cut(s)	184
BsmI	GAATGC	1 cut(s)	38
Bsp13I	TCCGGA	1 cut(s)	274
Bsp143I	GATC	2 cut(s)	76, 387
BspACI	CCGC	1 cut(s)	490
BspCNI	CTCAG	1 cut(s)	133
BspEI	TCCGGA	1 cut(s)	274
BspLI	GGNNCC	1 cut(s)	389
BspPI	GGATC	2 cut(s)	382, 395
BspQI	GCTCTTC	1 cut(s)	327
BspTI	CTTAAG	1 cut(s)	398
BsrI	ACTGG	1 cut(s)	54
BssMI	GATC	2 cut(s)	76, 387
Bst4CI	ACNGT	1 cut(s)	105
Bst6I	CTCTTC	1 cut(s)	327
BstAFI	CTTAAG	1 cut(s)	398
BstC8I	GCNNGC	1 cut(s)	490
BstDEI	CTNAG	1 cut(s)	141
BstF5I	GGATG	2 cut(s)	118, 151
BstKTI	GATC	2 cut(s)	79, 390
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	2 cut(s)	76, 387
BstMWI	GCNNNNNNNGC	2 cut(s)	413, 494
BstV1I	GCAGC	1 cut(s)	159
BstV2I	GAAGAC	1 cut(s)	301
BstX2I	RGATCY	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	387
BtsCI	GGATG	2 cut(s)	118, 151
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	1 cut(s)	490
Csp6I	GTAC	1 cut(s)	426
CviAII	CATG	1 cut(s)	313
CviJI	RGCY	3 cut(s)	157, 407, 476
CviKI_1	RGCY	3 cut(s)	157, 407, 476
CviQI	GTAC	1 cut(s)	426
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	2 cut(s)	78, 389
DpnII	GATC	2 cut(s)	76, 387
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco32I	GATATC	1 cut(s)	46
Eco57I	CTGAAG	2 cut(s)	179, 498
EcoRV	GATATC	1 cut(s)	46
FaeI	CATG	1 cut(s)	316
FaiI	YATR	8 cut(s)	63, 119, 224, 244, 292, 303, 314, 339
FatI	CATG	1 cut(s)	312
FauI	CCCGC	1 cut(s)	497
FblI	GTMKAC	1 cut(s)	295
Fnu4HI	GCNGC	1 cut(s)	173
FokI	GGATG	2 cut(s)	125, 158
Fsp4HI	GCNGC	1 cut(s)	173
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	1 cut(s)	173
HapII	CCGG	1 cut(s)	275
Hin1II	CATG	1 cut(s)	316
HincII	GTYRAC	1 cut(s)	296
HindII	GTYRAC	1 cut(s)	296
HinfI	GANTC	1 cut(s)	95
HpaII	CCGG	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	3 cut(s)	26, 100, 381
Hpy188III	TCNNGA	2 cut(s)	80, 275
Hpy8I	GTNNAC	1 cut(s)	296
Hpy99I	CGWCG	1 cut(s)	300
HpyCH4III	ACNGT	1 cut(s)	105
HpyCH4IV	ACGT	2 cut(s)	151, 298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	413, 494
HpyF3I	CTNAG	1 cut(s)	141
HpySE526I	ACGT	2 cut(s)	151, 298
Hsp92II	CATG	1 cut(s)	316
Kpn2I	TCCGGA	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	76, 387
LguI	GCTCTTC	1 cut(s)	327
LpnPI	CCDG	3 cut(s)	67, 288, 402
Lsp1109I	GCAGC	1 cut(s)	159
LweI	GCATC	1 cut(s)	379
MaeI	CTAG	1 cut(s)	227
MaeII	ACGT	2 cut(s)	151, 298
MalI	GATC	2 cut(s)	78, 389
MboI	GATC	2 cut(s)	76, 387
MboII	GAAGA	4 cut(s)	290, 301, 344, 491
MflI	RGATCY	1 cut(s)	387
MluCI	AATT	3 cut(s)	122, 235, 344
MnlI	CCTC	5 cut(s)	59, 69, 136, 195, 430
MroI	TCCGGA	1 cut(s)	274
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	3 cut(s)	126, 164, 399
MspCI	CTTAAG	1 cut(s)	398
MspI	CCGG	1 cut(s)	275
Mva1269I	GAATGC	1 cut(s)	38
MwoI	GCNNNNNNNGC	2 cut(s)	413, 494
NdeII	GATC	2 cut(s)	76, 387
NlaIII	CATG	1 cut(s)	316
NlaIV	GGNNCC	1 cut(s)	389
PciSI	GCTCTTC	1 cut(s)	327
PctI	GAATGC	1 cut(s)	38
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	95
PkrI	GCNGC	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	389
PsuI	RGATCY	1 cut(s)	387
RsaI	GTAC	1 cut(s)	427
RsaNI	GTAC	1 cut(s)	426
SalI	GTCGAC	1 cut(s)	294
SapI	GCTCTTC	1 cut(s)	327
SaqAI	TTAA	3 cut(s)	126, 164, 399
SatI	GCNGC	1 cut(s)	173
Sau3AI	GATC	2 cut(s)	76, 387
SetI	ASST	6 cut(s)	69, 154, 159, 301, 453, 478
SfaNI	GCATC	1 cut(s)	379
SmlI	CTYRAG	2 cut(s)	68, 398
SmoI	CTYRAG	2 cut(s)	68, 398
Sse9I	AATT	3 cut(s)	122, 235, 344
SsiI	CCGC	1 cut(s)	490
SspMI	CTAG	1 cut(s)	227
TaaI	ACNGT	1 cut(s)	105
TaiI	ACGT	2 cut(s)	154, 301
TaqI	TCGA	3 cut(s)	295, 373, 435
TasI	AATT	3 cut(s)	122, 235, 344
TfiI	GAWTC	1 cut(s)	95
Tru1I	TTAA	3 cut(s)	126, 164, 399
Tru9I	TTAA	3 cut(s)	126, 164, 399
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	1 cut(s)	172
TspDTI	ATGAA	4 cut(s)	45, 162, 211, 301
TspRI	CASTG	1 cut(s)	145
Vha464I	CTTAAG	1 cut(s)	398
XapI	RAATTY	2 cut(s)	122, 235
XmiI	GTMKAC	1 cut(s)	295
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.