Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0017385

Physical Location & Seq

Genomic Coordinates Forward (+)

44290270 .. 44290846

Gene Structure 577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG348600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGATATATTGGGTGTTTATGGATCAGATTTACTGTCTGAAGCTGAGAAACGTCTCTGCAGCGAAATGGGGTTACCCCCACCCTTTTACCTTAAGATGGAAGAAGTCATCTCAATTGAAATCTTCAGCGGCAATGTCACCAAAAGATCAGATGCCTATCACCTGTTCAAGATTGAACCTAGTAAAATTGACAGGGTCTACGACATGCTTGTGAAAAGGGGATTGCACAGTCTTGATGTGATGGGCATGCCTGGCTCCTTGCTCAGTCTTGATGTGATGCCTGGCTCCTTGCTCAGGGGGTCTACGACATATTCACAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0003700 GO:0003712 GO:0003713 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0031056 GO:0031058 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0035065 GO:0035066 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0140110 GO:1901983 GO:1901985 GO:1902275 GO:1902680 GO:1903506 GO:1903508 GO:1905269 GO:2000112 GO:2000756 GO:2000758 GO:2001141 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding ZZ

Protein Analysis

107

Amino Acids

11.93

Weight (kDa)

5.27

Isoelectric Point (pI)

63.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017385)

Species	Orthologous Gene IDs
malus_domestica	MD09G1125900.v1.1
pyrus_communis	pycom09g05000
rosa_chinensis	RchiOBHm_Chr1g0367451 RchiOBHm_Chr1g0367461 RchiOBHm_Chr7g0232701
rosa_multiflora	Rmu_sc0023109.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005270 Rroxscaffold_1G00071670
rosa_samantha	Rh3DG331300 Rh4AG082800 Rh5DG469600 Rh7AG348500 Rh7AG348600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	198, 302
AciI	CCGC	1 cut(s)	129
AclWI	GGATC	1 cut(s)	31
AcuI	CTGAAG	2 cut(s)	60, 109
AfiI	CCNNNNNNNGG	2 cut(s)	97, 294
AflII	CTTAAG	1 cut(s)	92
AgsI	TTSAA	3 cut(s)	119, 169, 176
AjnI	CCWGG	2 cut(s)	250, 280
AluBI	AGCT	1 cut(s)	44
AluI	AGCT	1 cut(s)	44
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	31
ApeKI	GCWGC	1 cut(s)	60
AsuHPI	GGTGA	2 cut(s)	130, 152
BbvI	GCAGC	1 cut(s)	72
BccI	CCATC	2 cut(s)	91, 235
BciT130I	CCWGG	2 cut(s)	252, 282
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	1 cut(s)	180
BfmI	CTRYAG	1 cut(s)	58
BfrI	CTTAAG	1 cut(s)	92
BisI	GCNGC	2 cut(s)	61, 130
BlsI	GCNGC	2 cut(s)	62, 131
Bme1390I	CCNGG	2 cut(s)	252, 282
BmiI	GGNNCC	2 cut(s)	256, 286
BmrFI	CCNGG	2 cut(s)	252, 282
BmsI	GCATC	2 cut(s)	142, 267
Bpu10I	CCTNAGC	1 cut(s)	293
BsaBI	GATNNNNATC	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 294
Bse3DI	GCAATG	1 cut(s)	139
Bse8I	GATNNNNATC	1 cut(s)	156
BseBI	CCWGG	2 cut(s)	252, 282
BseJI	GATNNNNATC	1 cut(s)	156
BseLI	CCNNNNNNNGG	2 cut(s)	97, 294
BseMI	GCAATG	1 cut(s)	139
BseMII	CTCAG	3 cut(s)	36, 277, 307
BseXI	GCAGC	1 cut(s)	72
BslI	CCNNNNNNNGG	2 cut(s)	97, 294
BsmAI	GTCTC	1 cut(s)	59
BsmBI	CGTCTC	1 cut(s)	59
Bsp143I	GATC	2 cut(s)	23, 146
BspACI	CCGC	1 cut(s)	129
BspCNI	CTCAG	3 cut(s)	37, 276, 306
BspLI	GGNNCC	2 cut(s)	256, 286
BspMAI	CTGCAG	1 cut(s)	62
BspPI	GGATC	1 cut(s)	31
BspTI	CTTAAG	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	139
BssMI	GATC	2 cut(s)	23, 146
Bst2UI	CCWGG	2 cut(s)	252, 282
Bst4CI	ACNGT	2 cut(s)	36, 230
BstAFI	CTTAAG	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	248
BstDEI	CTNAG	3 cut(s)	45, 263, 293
BstEII	GGTNACC	1 cut(s)	72
BstENI	CCTNNNNNAGG	1 cut(s)	292
BstKTI	GATC	2 cut(s)	26, 149
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	2 cut(s)	23, 146
BstMWI	GCNNNNNNNGC	1 cut(s)	252
BstNI	CCWGG	2 cut(s)	252, 282
BstNSI	RCATGY	2 cut(s)	208, 250
BstPI	GGTNACC	1 cut(s)	72
BstSCI	CCNGG	2 cut(s)	250, 280
BstSFI	CTRYAG	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	72
Cac8I	GCNNGC	1 cut(s)	248
CviAII	CATG	2 cut(s)	205, 247
CviJI	RGCY	3 cut(s)	44, 255, 285
CviKI_1	RGCY	3 cut(s)	44, 255, 285
DdeI	CTNAG	3 cut(s)	45, 263, 293
DpnI	GATC	2 cut(s)	25, 148
DpnII	GATC	2 cut(s)	23, 146
Eco57I	CTGAAG	2 cut(s)	60, 109
Eco91I	GGTNACC	1 cut(s)	72
EcoNI	CCTNNNNNAGG	1 cut(s)	292
EcoO65I	GGTNACC	1 cut(s)	72
EcoRII	CCWGG	2 cut(s)	250, 280
Esp3I	CGTCTC	1 cut(s)	59
FaeI	CATG	2 cut(s)	208, 250
FaiI	YATR	5 cut(s)	8, 21, 206, 248, 310
FatI	CATG	2 cut(s)	204, 246
FblI	GTMKAC	2 cut(s)	198, 302
Fnu4HI	GCNGC	2 cut(s)	61, 130
Fsp4HI	GCNGC	2 cut(s)	61, 130
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	2 cut(s)	61, 130
Hin1II	CATG	2 cut(s)	208, 250
HphI	GGTGA	2 cut(s)	130, 152
Hpy166II	GTNNAC	2 cut(s)	199, 303
Hpy188I	TCNGA	3 cut(s)	28, 40, 151
Hpy188III	TCNNGA	3 cut(s)	169, 233, 269
Hpy8I	GTNNAC	2 cut(s)	199, 303
HpyCH4III	ACNGT	2 cut(s)	36, 230
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	2 cut(s)	60, 226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	252
HpyF3I	CTNAG	3 cut(s)	45, 263, 293
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	2 cut(s)	208, 250
Kzo9I	GATC	2 cut(s)	23, 146
LmnI	GCTCC	2 cut(s)	260, 290
LpnPI	CCDG	7 cut(s)	176, 178, 237, 264, 267, 280, 294
Lsp1109I	GCAGC	1 cut(s)	72
LweI	GCATC	2 cut(s)	142, 267
MaeI	CTAG	1 cut(s)	180
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	2 cut(s)	72, 136
MalI	GATC	2 cut(s)	25, 148
MboI	GATC	2 cut(s)	23, 146
MboII	GAAGA	2 cut(s)	113, 115
MfeI	CAATTG	1 cut(s)	114
MluCI	AATT	2 cut(s)	114, 186
MseI	TTAA	1 cut(s)	93
MslI	CAYNNNNRTG	1 cut(s)	209
MspA1I	CMGCKG	1 cut(s)	129
MspCI	CTTAAG	1 cut(s)	92
MspR9I	CCNGG	2 cut(s)	252, 282
MunI	CAATTG	1 cut(s)	114
MvaI	CCWGG	2 cut(s)	252, 282
MwoI	GCNNNNNNNGC	1 cut(s)	252
NdeII	GATC	2 cut(s)	23, 146
NlaIII	CATG	2 cut(s)	208, 250
NlaIV	GGNNCC	2 cut(s)	256, 286
NmuCI	GTSAC	1 cut(s)	136
NspI	RCATGY	2 cut(s)	208, 250
PaeI	GCATGC	1 cut(s)	250
PflFI	GACNNNGTC	1 cut(s)	194
PkrI	GCNGC	2 cut(s)	62, 131
Psp6I	CCWGG	2 cut(s)	250, 280
PspEI	GGTNACC	1 cut(s)	72
PspGI	CCWGG	2 cut(s)	250, 280
PspN4I	GGNNCC	2 cut(s)	256, 286
PstI	CTGCAG	1 cut(s)	62
PsyI	GACNNNGTC	1 cut(s)	194
RseI	CAYNNNNRTG	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	2 cut(s)	61, 130
Sau3AI	GATC	2 cut(s)	23, 146
ScrFI	CCNGG	2 cut(s)	252, 282
SetI	ASST	5 cut(s)	46, 55, 93, 165, 181
SfaNI	GCATC	2 cut(s)	142, 267
SfcI	CTRYAG	1 cut(s)	58
SmiMI	CAYNNNNRTG	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
SphI	GCATGC	1 cut(s)	250
Sse9I	AATT	2 cut(s)	114, 186
SsiI	CCGC	1 cut(s)	129
SspMI	CTAG	1 cut(s)	180
StyD4I	CCNGG	2 cut(s)	250, 280
TaaI	ACNGT	2 cut(s)	36, 230
TaiI	ACGT	1 cut(s)	55
TasI	AATT	2 cut(s)	114, 186
TauI	GCSGC	1 cut(s)	132
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	1 cut(s)	60
Tsp45I	GTSAC	1 cut(s)	136
Tth111I	GACNNNGTC	1 cut(s)	194
Vha464I	CTTAAG	1 cut(s)	92
XagI	CCTNNNNNAGG	1 cut(s)	292
XceI	RCATGY	2 cut(s)	208, 250
XmiI	GTMKAC	2 cut(s)	198, 302
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.