Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0017385

Physical Location & Seq

Genomic Coordinates Forward (+)

44288952 .. 44290167

Gene Structure 1216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG348500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGAATTTAAGGATAATGACACTGAGGATGAACGTGAGCTGAAGTTAAGAGTGCTGCGAATCTATTCAAAGAGACTTGATGAGAGGAAGTGTAGAAAGGATTTCATACTAGAAAGAAATTTATTATATCCAAATCCTTTTGAAAAGGACTTATCTCCGGAAGAAAAGGCGATATGTCGACGTTATGATGTCTTCATGTGCTTCCACTCCAAGGAAGAGCATACAGAATTACTTCAAACTGTTATTGGAGAGCATCGAACTCTGAAAAGGATCCAAGAACTTAAGGAAGCCCGAAATGCTGGTTGCCGTACATCGTCCGAGGCAGATAGATACCTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0003700 GO:0003712 GO:0003713 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0031056 GO:0031058 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0035065 GO:0035066 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0140110 GO:1901983 GO:1901985 GO:1902275 GO:1902680 GO:1903506 GO:1903508 GO:1905269 GO:2000112 GO:2000756 GO:2000758 GO:2001141 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding ZZ

Protein Analysis

113

Amino Acids

13.75

Weight (kDa)

6.34

Isoelectric Point (pI)

45.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TADA2A-like_3rd	PF22941	1 - 48	4.4e-13	Transcriptional adapter 2-alpha-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0017385)

Species	Orthologous Gene IDs
malus_domestica	MD09G1125900.v1.1
pyrus_communis	pycom09g05000
rosa_chinensis	RchiOBHm_Chr1g0367451 RchiOBHm_Chr1g0367461 RchiOBHm_Chr7g0232701
rosa_multiflora	Rmu_sc0023109.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005270 Rroxscaffold_1G00071670
rosa_samantha	Rh3DG331300 Rh4AG082800 Rh5DG469600 Rh7AG348500 Rh7AG348600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	178
AccIII	TCCGGA	1 cut(s)	157
AclWI	GGATC	2 cut(s)	265, 278
AcsI	RAATTY	2 cut(s)	5, 118
AcuI	CTGAAG	1 cut(s)	62
AfaI	GTAC	1 cut(s)	310
AfiI	CCNNNNNNNGG	1 cut(s)	211
AflII	CTTAAG	1 cut(s)	281
AgsI	TTSAA	4 cut(s)	69, 143, 236, 338
AluBI	AGCT	1 cut(s)	40
AluI	AGCT	1 cut(s)	40
Alw26I	GTCTC	1 cut(s)	67
AlwI	GGATC	2 cut(s)	265, 278
Aor13HI	TCCGGA	1 cut(s)	157
ApeKI	GCWGC	1 cut(s)	55
ApoI	RAATTY	2 cut(s)	5, 118
Asp700I	GAANNNNTTC	2 cut(s)	64, 231
BamHI	GGATCC	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	184
BbvI	GCAGC	1 cut(s)	42
BceAI	ACGGC	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	67
BfaI	CTAG	1 cut(s)	110
BfrI	CTTAAG	1 cut(s)	281
BisI	GCNGC	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	57
BmiI	GGNNCC	1 cut(s)	272
BmsI	GCATC	1 cut(s)	262
BpiI	GAAGAC	1 cut(s)	184
BsaJI	CCNNGG	2 cut(s)	210, 318
BsaWI	WCCGGW	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
BseAI	TCCGGA	1 cut(s)	157
BseDI	CCNNGG	2 cut(s)	210, 318
BseGI	GGATG	1 cut(s)	34
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	15
BseXI	GCAGC	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	1 cut(s)	67
Bsp13I	TCCGGA	1 cut(s)	157
Bsp143I	GATC	1 cut(s)	270
BspCNI	CTCAG	1 cut(s)	16
BspEI	TCCGGA	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	272
BspPI	GGATC	2 cut(s)	265, 278
BspQI	GCTCTTC	1 cut(s)	210
BspTI	CTTAAG	1 cut(s)	281
BssECI	CCNNGG	2 cut(s)	210, 318
BssMI	GATC	1 cut(s)	270
BssT1I	CCWWGG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	241
Bst6I	CTCTTC	1 cut(s)	210
BstAFI	CTTAAG	1 cut(s)	281
BstDEI	CTNAG	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	34
BstKTI	GATC	1 cut(s)	273
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	270
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstV1I	GCAGC	1 cut(s)	42
BstV2I	GAAGAC	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	21
Csp6I	GTAC	1 cut(s)	309
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	2 cut(s)	40, 290
CviKI_1	RGCY	2 cut(s)	40, 290
CviQI	GTAC	1 cut(s)	309
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	1 cut(s)	272
DpnII	GATC	1 cut(s)	270
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	210
Eco57I	CTGAAG	1 cut(s)	62
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	1 cut(s)	199
FaiI	YATR	6 cut(s)	107, 127, 175, 186, 197, 222
FatI	CATG	1 cut(s)	195
FblI	GTMKAC	1 cut(s)	178
Fnu4HI	GCNGC	1 cut(s)	56
FokI	GGATG	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	56
FspBI	CTAG	1 cut(s)	110
GluI	GCNGC	1 cut(s)	56
HapII	CCGG	1 cut(s)	158
Hin1II	CATG	1 cut(s)	199
HincII	GTYRAC	1 cut(s)	179
HindII	GTYRAC	1 cut(s)	179
HinfI	GANTC	1 cut(s)	60
HpaII	CCGG	1 cut(s)	158
Hpy166II	GTNNAC	1 cut(s)	179
Hpy188I	TCNGA	2 cut(s)	264, 319
Hpy188III	TCNNGA	1 cut(s)	158
Hpy8I	GTNNAC	1 cut(s)	179
Hpy99I	CGWCG	1 cut(s)	183
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4IV	ACGT	2 cut(s)	34, 181
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpyF3I	CTNAG	1 cut(s)	24
HpySE526I	ACGT	2 cut(s)	34, 181
Hsp92II	CATG	1 cut(s)	199
Kpn2I	TCCGGA	1 cut(s)	157
Kzo9I	GATC	1 cut(s)	270
LguI	GCTCTTC	1 cut(s)	210
LpnPI	CCDG	2 cut(s)	171, 285
Lsp1109I	GCAGC	1 cut(s)	42
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	2 cut(s)	34, 181
MalI	GATC	1 cut(s)	272
MboI	GATC	1 cut(s)	270
MboII	GAAGA	3 cut(s)	173, 184, 227
MflI	RGATCY	1 cut(s)	270
MluCI	AATT	3 cut(s)	5, 118, 227
MnlI	CCTC	3 cut(s)	19, 78, 313
MroI	TCCGGA	1 cut(s)	157
MroXI	GAANNNNTTC	2 cut(s)	64, 231
MseI	TTAA	3 cut(s)	9, 47, 282
MspCI	CTTAAG	1 cut(s)	281
MspI	CCGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	296
NdeII	GATC	1 cut(s)	270
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	1 cut(s)	272
PciSI	GCTCTTC	1 cut(s)	210
PdmI	GAANNNNTTC	2 cut(s)	64, 231
PfeI	GAWTC	1 cut(s)	60
PkrI	GCNGC	1 cut(s)	57
PspN4I	GGNNCC	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	270
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
SalI	GTCGAC	1 cut(s)	177
SapI	GCTCTTC	1 cut(s)	210
SaqAI	TTAA	3 cut(s)	9, 47, 282
SatI	GCNGC	1 cut(s)	56
Sau3AI	GATC	1 cut(s)	270
SetI	ASST	4 cut(s)	37, 42, 184, 336
SfaNI	GCATC	1 cut(s)	262
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	3 cut(s)	5, 118, 227
SspMI	CTAG	1 cut(s)	110
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	241
TaiI	ACGT	2 cut(s)	37, 184
TaqI	TCGA	2 cut(s)	178, 256
TasI	AATT	3 cut(s)	5, 118, 227
TfiI	GAWTC	1 cut(s)	60
Tru1I	TTAA	3 cut(s)	9, 47, 282
Tru9I	TTAA	3 cut(s)	9, 47, 282
TscAI	CASTG	1 cut(s)	28
TseI	GCWGC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	45, 94, 184
TspRI	CASTG	1 cut(s)	28
Vha464I	CTTAAG	1 cut(s)	281
XapI	RAATTY	2 cut(s)	5, 118
XmiI	GTMKAC	1 cut(s)	178
XmnI	GAANNNNTTC	2 cut(s)	64, 231
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.