Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0010758

Physical Location & Seq

Genomic Coordinates Reverse (-)

15835452 .. 15838636

Gene Structure 3185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1183700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1656 bp

ATGAGTAATTGGTTGGGATTCTCTCTGGCTCCACACTTGAGGATCCATGAAGGATTTGGTGGGAGGGAAGAAGAACAAGAACATGTAGGAGGTGGAGGCTTCTCTTCTGAAATGACCATCATGCCCTTGCGCTCTGATGGTTCTCTCTGTGTTTCTGCTGACCCTTTCAGCCGCTCCAATGGCTCTGAAGATTGGAGATATGAGAACCAAATGGGTGCAACAAGTGAGACAGCTGCAGACCCAAACGAAGACGGTCCAAAGCTTGAAGATTTCTTGGGCAGCTGCTACTCCAGCTCTCCTCCTCCAACTGATGAAACCAAAGCCTACAACTTCCACACCCAGCAAGACCAAAACCAAGACTCACCCATCTCCCAAATCAACGTCAACGAGTCTCCCAACTTCACCACCACCACACCCAGCAACGGAGAAATCGAACCCAGCAGAGATCGCTTTATCAATAATCAACCCTACACCCATTACTGCAATACCCTGAACCCAGCACAAAGCCTTGTCCCTAGTAATGGCATGTACAAATCTTGGTTGGGCCAAACGCTGCCCTTTTGCGATGAGAAATCATTATGTGGTGGTGATCATCAGTCCGCTCTCTCACTCACCATGTGTCCAAGCTTGCAAAATGGTAATAATAATAATAATATGGGTGTAATTTCTCATCAACAAATCCAAATAGTAGATAACAAGAAAAGGGCTGTTGGGAAATCTCCTGCTAGAGAACCAGTTCCTAGAAAATCTCTCGACACTTTTGGTCAGCGTACTTCTCAGTACCGGGGTGTCACCAGGCATAGGTGGACTGGGAGATATGAGGCCCATCTGTGGGATAATAGTTGCAGAAAAGAAGGGCAAACAAGGAAAGGAAGGCAAGGCGGTTATGATAAGGAGGAGAGAGCTGCTAGGGCTTATGATTTAGCTGCACTCAAGTATTGGGGTTCAACTACTCATATAAACTTCCCACTAAGTACTTATGAAAAAGAGTTAGAAGAGATGAAGAACATGACAAGGCAAGAATTTGTAGCCAATTTGAGAAGGAAAAGCAGTGGGTTTTCAAGAGGAGCCTCTGTATACAGAGGTGTGACAAGACACCATCAGCATGGAAGGTGGCAAGCTAGGATTGGCAGAGTTGCTGGAAACAAAGACTTGTACCTTGGAACATTTAGCACACAAGAAGAAGCAGCTGAGGCTTATGACATTGCAGCAATCAAGTTTAGGGGCACAAGTGCTGTGACCAACTTTGACATGAGTAGGTATGATGTGAAGAGGATTTGCTCAAGCTCCACCCTCATTGCCAGTGACCTTGCCAAACGTTCACCGAAAGACTCAGCTCCTCCGGCCGCAGCGATCGAGGACTTCAATTCCTGCGCTTCGTCTACTTCTCCACATCCCCTTTTGGCCATCACAAGTGGTGGTGAACCTTCTGATGACTTGGCTGACATGATGTGGAACAATGCAGCAGAGGATCATTCAAACACAAACGCACCATTGGGTGCCTCAAGCCCAAAAAGTCATGAGTTTGGCATTGGAGGAGGTGATTATTCTCATGCTTATTTCTCAGCAGGAAATAATGGTGGGACTGATCACAGCAGGCTTGGAAATCTTGGTTTGGTTCAACAGGTTCCTATGTTTGCACTGTGGAATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

552

Amino Acids

60.76

Weight (kDa)

6.07

Isoelectric Point (pI)

53.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	260 - 315	1.4e-07	AP2 domain
AP2	PF00847	358 - 409	2.8e-09	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72570
fragaria_vesca	FvH4_6g34710
malus_domestica	MD00G1092000.v1.1 MD09G1183700.v1.1
prunus_persica	Prupe.3G042000_v2.0.a1
pyrus_communis	pycom09g10110
rosa_chinensis	RchiOBHm_Chr2g0145271
rosa_laevigata	RLG00000020135
rosa_multiflora	Rmu_sc0001298.1_g000029
rosa_roxburghii	Rroxscaffold_2G00100770
rosa_rugosa	Rorug02G0391600
rosa_samantha	Rh2AG444400 Rh2AG444500 Rh2BG455400 Rh2BG455500 Rh2CG431400 Rh2CG431500 Rh2DG465400 Rh2DG465500
rosa_wichuraiana	Rw2G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1499
AccBSI	CCGCTC	2 cut(s)	174, 602
AccI	GTMKAC	2 cut(s)	1077, 1382
AciI	CCGC	4 cut(s)	172, 600, 882, 1347
AclI	AACGTT	1 cut(s)	1318
AclWI	GGATC	3 cut(s)	37, 50, 1479
AcoI	YGGCCR	2 cut(s)	1344, 1404
AcsI	RAATTY	1 cut(s)	1022
AcuI	CTGAAG	1 cut(s)	207
AdeI	CACNNNGTG	1 cut(s)	618
AfaI	GTAC	5 cut(s)	530, 772, 782, 976, 1157
AfiI	CCNNNNNNNGG	5 cut(s)	422, 521, 801, 831, 832
AflIII	ACRYGT	1 cut(s)	82
AgsI	TTSAA	6 cut(s)	266, 948, 1062, 1366, 1479, 1622
AjnI	CCWGG	1 cut(s)	794
Alw26I	GTCTC	2 cut(s)	221, 396
AlwI	GGATC	3 cut(s)	37, 50, 1479
AoxI	GGCC	4 cut(s)	544, 822, 1344, 1404
ApoI	RAATTY	1 cut(s)	1022
Asp700I	GAANNNNTTC	1 cut(s)	735
AspLEI	GCGC	2 cut(s)	132, 1376
AspS9I	GGNCC	3 cut(s)	254, 544, 823
AsuC2I	CCSGG	1 cut(s)	785
AsuHPI	GGTGA	8 cut(s)	354, 394, 599, 604, 784, 1314, 1433, 1553
AvaII	GGWCC	1 cut(s)	254
BaeGI	GKGCMC	1 cut(s)	1229
BalI	TGGCCA	1 cut(s)	1406
BamHI	GGATCC	1 cut(s)	42
BanI	GGYRCC	1 cut(s)	1499
BbsI	GAAGAC	1 cut(s)	255
BbvCI	CCTCAGC	1 cut(s)	1191
BccI	CCATC	6 cut(s)	125, 131, 374, 834, 1107, 1415
BciT130I	CCWGG	1 cut(s)	796
BclI	TGATCA	2 cut(s)	589, 1588
BcnI	CCSGG	1 cut(s)	785
BcoDI	GTCTC	2 cut(s)	221, 396
BfaI	CTAG	5 cut(s)	516, 726, 741, 909, 1122
BfmI	CTRYAG	1 cut(s)	234
BmcAI	AGTACT	1 cut(s)	976
Bme1390I	CCNGG	2 cut(s)	785, 796
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	3 cut(s)	254, 544, 823
BmiI	GGNNCC	5 cut(s)	30, 44, 1069, 1501, 1629
BmrFI	CCNGG	2 cut(s)	785, 796
BmrI	ACTGGG	1 cut(s)	819
BmuI	ACTGGG	1 cut(s)	819
BpiI	GAAGAC	1 cut(s)	255
BpmI	CTGGAG	1 cut(s)	274
Bpu10I	CCTNAGC	1 cut(s)	1191
BpuEI	CTTGAG	4 cut(s)	58, 917, 1267, 1489
BpuMI	CCSGG	1 cut(s)	785
BsaJI	CCNNGG	2 cut(s)	784, 1159
BsaXI	ACNNNNNCTCC	2 cut(s)	1059, 1089
Bsc4I	CCNNNNNNNGG	5 cut(s)	422, 521, 801, 831, 832
Bse1I	ACTGG	3 cut(s)	734, 814, 1302
Bse3DI	GCAATG	2 cut(s)	1203, 1296
BseBI	CCWGG	1 cut(s)	796
BseDI	CCNNGG	2 cut(s)	784, 1159
BseGI	GGATG	1 cut(s)	1393
BseLI	CCNNNNNNNGG	5 cut(s)	422, 521, 801, 831, 832
BseMI	GCAATG	2 cut(s)	1203, 1296
BseMII	CTCAG	4 cut(s)	791, 1182, 1347, 1578
BseNI	ACTGG	3 cut(s)	734, 814, 1302
BseRI	GAGGAG	6 cut(s)	288, 291, 911, 1080, 1329, 1551
BseSI	GKGCMC	1 cut(s)	1229
BseX3I	CGGCCG	1 cut(s)	1344
BseYI	CCCAGC	4 cut(s)	339, 416, 437, 496
BsgI	GTGCAG	1 cut(s)	912
Bsh1285I	CGRYCG	2 cut(s)	1347, 1356
BshFI	GGCC	4 cut(s)	546, 824, 1346, 1406
BshNI	GGYRCC	1 cut(s)	1499
BsiEI	CGRYCG	2 cut(s)	1347, 1356
BsiSI	CCGG	2 cut(s)	784, 1343
BslFI	GGGAC	2 cut(s)	497, 1597
BslI	CCNNNNNNNGG	5 cut(s)	422, 521, 801, 831, 832
BsmAI	GTCTC	2 cut(s)	221, 396
BsmFI	GGGAC	2 cut(s)	497, 1597
BsnI	GGCC	4 cut(s)	546, 824, 1346, 1406
Bsp1286I	GDGCHC	1 cut(s)	1229
Bsp1407I	TGTACA	1 cut(s)	528
Bsp143I	GATC	6 cut(s)	42, 445, 589, 1353, 1471, 1588
BspACI	CCGC	4 cut(s)	172, 600, 882, 1347
BspANI	GGCC	4 cut(s)	546, 824, 1346, 1406
BspCNI	CTCAG	4 cut(s)	790, 1183, 1346, 1577
BspHI	TCATGA	1 cut(s)	1519
BspLI	GGNNCC	5 cut(s)	30, 44, 1069, 1501, 1629
BspMAI	CTGCAG	1 cut(s)	238
BspPI	GGATC	3 cut(s)	37, 50, 1479
BspT107I	GGYRCC	1 cut(s)	1499
BsrBI	CCGCTC	2 cut(s)	174, 602
BsrDI	GCAATG	2 cut(s)	1203, 1296
BsrGI	TGTACA	1 cut(s)	528
BsrI	ACTGG	3 cut(s)	734, 814, 1302
BssECI	CCNNGG	2 cut(s)	784, 1159
BssMI	GATC	6 cut(s)	42, 445, 589, 1353, 1471, 1588
BssNAI	GTATAC	1 cut(s)	1078
BssT1I	CCWWGG	1 cut(s)	1159
Bst1107I	GTATAC	1 cut(s)	1078
Bst2UI	CCWGG	1 cut(s)	796
Bst4CI	ACNGT	2 cut(s)	254, 1644
Bst6I	CTCTTC	3 cut(s)	109, 990, 1265
BstAUI	TGTACA	1 cut(s)	528
BstC8I	GCNNGC	3 cut(s)	629, 1119, 1598
BstDEI	CTNAG	5 cut(s)	777, 971, 1191, 1333, 1564
BstF5I	GGATG	1 cut(s)	1393
BstHHI	GCGC	2 cut(s)	132, 1376
BstKTI	GATC	6 cut(s)	45, 448, 592, 1356, 1474, 1591
BstMAI	GTCTC	2 cut(s)	221, 396
BstMBI	GATC	6 cut(s)	42, 445, 589, 1353, 1471, 1588
BstMCI	CGRYCG	2 cut(s)	1347, 1356
BstMWI	GCNNNNNNNGC	6 cut(s)	180, 291, 447, 911, 1193, 1343
BstNI	CCWGG	1 cut(s)	796
BstNSI	RCATGY	2 cut(s)	86, 529
BstSCI	CCNGG	2 cut(s)	783, 794
BstSFI	CTRYAG	1 cut(s)	234
BstSLI	GKGCMC	1 cut(s)	1229
BstV2I	GAAGAC	1 cut(s)	255
BstX2I	RGATCY	1 cut(s)	42
BstXI	CCANNNNNNTGG	1 cut(s)	1106
BstYI	RGATCY	1 cut(s)	42
BstZ17I	GTATAC	1 cut(s)	1078
BstZI	CGGCCG	1 cut(s)	1344
BsuRI	GGCC	4 cut(s)	546, 824, 1346, 1406
BtgZI	GCGATG	1 cut(s)	579
BtsCI	GGATG	1 cut(s)	1393
BtsI	GCAGTG	1 cut(s)	1057
BtsIMutI	CAGTG	3 cut(s)	1057, 1309, 1640
Cac8I	GCNNGC	3 cut(s)	629, 1119, 1598
CciI	TCATGA	1 cut(s)	1519
CfoI	GCGC	2 cut(s)	132, 1376
Cfr13I	GGNCC	3 cut(s)	254, 544, 823
Csp6I	GTAC	5 cut(s)	529, 771, 781, 975, 1156
CspCI	CAANNNNNGTGG	2 cut(s)	1279, 1314
CviQI	GTAC	5 cut(s)	529, 771, 781, 975, 1156
DdeI	CTNAG	5 cut(s)	777, 971, 1191, 1333, 1564
DpnI	GATC	6 cut(s)	44, 447, 591, 1355, 1473, 1590
DpnII	GATC	6 cut(s)	42, 445, 589, 1353, 1471, 1588
DraIII	CACNNNGTG	1 cut(s)	618
EaeI	YGGCCR	2 cut(s)	1344, 1404
EagI	CGGCCG	1 cut(s)	1344
Eam1104I	CTCTTC	3 cut(s)	109, 990, 1265
EarI	CTCTTC	3 cut(s)	109, 990, 1265
EclXI	CGGCCG	1 cut(s)	1344
Eco130I	CCWWGG	1 cut(s)	1159
Eco47I	GGWCC	1 cut(s)	254
Eco52I	CGGCCG	1 cut(s)	1344
Eco57I	CTGAAG	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	794
EcoT14I	CCWWGG	1 cut(s)	1159
ErhI	CCWWGG	1 cut(s)	1159
FaqI	GGGAC	2 cut(s)	497, 1597
FbaI	TGATCA	2 cut(s)	589, 1588
FblI	GTMKAC	2 cut(s)	1077, 1382
FokI	GGATG	1 cut(s)	1380
FspBI	CTAG	5 cut(s)	516, 726, 741, 909, 1122
GlaI	GCGC	2 cut(s)	131, 1375
GsaI	CCCAGC	4 cut(s)	343, 420, 441, 500
GsuI	CTGGAG	1 cut(s)	274
HaeIII	GGCC	4 cut(s)	546, 824, 1346, 1406
HapII	CCGG	2 cut(s)	784, 1343
HhaI	GCGC	2 cut(s)	132, 1376
Hin6I	GCGC	2 cut(s)	130, 1374
HinP1I	GCGC	2 cut(s)	130, 1374
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HindIII	AAGCTT	2 cut(s)	260, 625
HinfI	GANTC	4 cut(s)	18, 359, 389, 1331
HpaII	CCGG	2 cut(s)	784, 1343
HphI	GGTGA	8 cut(s)	354, 394, 599, 604, 784, 1314, 1433, 1553
Hpy166II	GTNNAC	6 cut(s)	385, 807, 1078, 1322, 1383, 1424
Hpy188I	TCNGA	4 cut(s)	109, 136, 187, 1432
Hpy188III	TCNNGA	3 cut(s)	752, 1062, 1520
Hpy8I	GTNNAC	6 cut(s)	385, 807, 1078, 1322, 1383, 1424
HpyAV	CCTTC	6 cut(s)	44, 848, 867, 1035, 1104, 1437
HpyCH4III	ACNGT	2 cut(s)	254, 1644
HpyCH4IV	ACGT	2 cut(s)	381, 1318
HpyCH4V	TGCA	9 cut(s)	218, 236, 483, 631, 846, 929, 1208, 1463, 1640
HpyF10VI	GCNNNNNNNGC	6 cut(s)	180, 291, 447, 911, 1193, 1343
HpyF3I	CTNAG	5 cut(s)	777, 971, 1191, 1333, 1564
HpySE526I	ACGT	2 cut(s)	381, 1318
HspAI	GCGC	2 cut(s)	130, 1374
Ksp22I	TGATCA	2 cut(s)	589, 1588
Kzo9I	GATC	6 cut(s)	42, 445, 589, 1353, 1471, 1588
LmnI	GCTCC	5 cut(s)	34, 179, 1067, 1292, 1342
MaeI	CTAG	5 cut(s)	516, 726, 741, 909, 1122
MaeII	ACGT	2 cut(s)	381, 1318
MaeIII	GTNAC	4 cut(s)	790, 1087, 1237, 1304
MalI	GATC	6 cut(s)	44, 447, 591, 1355, 1473, 1590
MbiI	CCGCTC	2 cut(s)	174, 602
MboI	GATC	6 cut(s)	42, 445, 589, 1353, 1471, 1588
MflI	RGATCY	1 cut(s)	42
MhlI	GDGCHC	1 cut(s)	1229
MlsI	TGGCCA	1 cut(s)	1406
MluCI	AATT	5 cut(s)	7, 663, 1022, 1033, 1366
MluNI	TGGCCA	1 cut(s)	1406
MlyI	GAGTC	3 cut(s)	353, 398, 1325
MmeI	TCCRAC	1 cut(s)	329
Mox20I	TGGCCA	1 cut(s)	1406
MroXI	GAANNNNTTC	1 cut(s)	735
MscI	TGGCCA	1 cut(s)	1406
MslI	CAYNNNNRTG	1 cut(s)	1104
Msp20I	TGGCCA	1 cut(s)	1406
MspA1I	CMGCKG	3 cut(s)	233, 282, 1190
MspI	CCGG	2 cut(s)	784, 1343
MspR9I	CCNGG	2 cut(s)	785, 796
MvaI	CCWGG	1 cut(s)	796
MwoI	GCNNNNNNNGC	6 cut(s)	180, 291, 447, 911, 1193, 1343
NciI	CCSGG	1 cut(s)	785
NdeII	GATC	6 cut(s)	42, 445, 589, 1353, 1471, 1588
NlaIV	GGNNCC	5 cut(s)	30, 44, 1069, 1501, 1629
NmuCI	GTSAC	4 cut(s)	790, 1087, 1237, 1304
NspI	RCATGY	2 cut(s)	86, 529
PagI	TCATGA	1 cut(s)	1519
PciI	ACATGT	1 cut(s)	82
PcsI	WCGNNNNNNNCGW	1 cut(s)	429
PdmI	GAANNNNTTC	1 cut(s)	735
PfeI	GAWTC	1 cut(s)	18
Ple19I	CGATCG	1 cut(s)	1356
PleI	GAGTC	3 cut(s)	353, 397, 1325
PpsI	GAGTC	3 cut(s)	353, 397, 1325
PscI	ACATGT	1 cut(s)	82
Psp1406I	AACGTT	1 cut(s)	1318
Psp6I	CCWGG	1 cut(s)	794
PspFI	CCCAGC	4 cut(s)	339, 416, 437, 496
PspGI	CCWGG	1 cut(s)	794
PspN4I	GGNNCC	5 cut(s)	30, 44, 1069, 1501, 1629
PspPI	GGNCC	3 cut(s)	254, 544, 823
PstI	CTGCAG	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	42
PvuI	CGATCG	1 cut(s)	1356
PvuII	CAGCTG	3 cut(s)	233, 282, 1190
RsaI	GTAC	5 cut(s)	530, 772, 782, 976, 1157
RsaNI	GTAC	5 cut(s)	529, 771, 781, 975, 1156
RseI	CAYNNNNRTG	1 cut(s)	1104
Sau3AI	GATC	6 cut(s)	42, 445, 589, 1353, 1471, 1588
Sau96I	GGNCC	3 cut(s)	254, 544, 823
ScaI	AGTACT	1 cut(s)	976
SchI	GAGTC	3 cut(s)	353, 398, 1325
ScrFI	CCNGG	2 cut(s)	785, 796
SduI	GDGCHC	1 cut(s)	1229
SfcI	CTRYAG	1 cut(s)	234
SinI	GGWCC	1 cut(s)	254
SmiMI	CAYNNNNRTG	1 cut(s)	1104
SmlI	CTYRAG	4 cut(s)	37, 932, 1282, 1504
SmoI	CTYRAG	4 cut(s)	37, 932, 1282, 1504
Sse9I	AATT	5 cut(s)	7, 663, 1022, 1033, 1366
SsiI	CCGC	4 cut(s)	172, 600, 882, 1347
SspMI	CTAG	5 cut(s)	516, 726, 741, 909, 1122
StyD4I	CCNGG	2 cut(s)	783, 794
StyI	CCWWGG	1 cut(s)	1159
TaaI	ACNGT	2 cut(s)	254, 1644
TaiI	ACGT	2 cut(s)	384, 1321
TaqI	TCGA	3 cut(s)	432, 753, 1356
TasI	AATT	5 cut(s)	7, 663, 1022, 1033, 1366
TatI	WGTACW	2 cut(s)	528, 974
TauI	GCSGC	2 cut(s)	174, 1349
TfiI	GAWTC	1 cut(s)	18
TscAI	CASTG	3 cut(s)	1057, 1309, 1647
TseFI	GTSAC	4 cut(s)	790, 1087, 1237, 1304
Tsp45I	GTSAC	4 cut(s)	790, 1087, 1237, 1304
TspDTI	ATGAA	4 cut(s)	63, 327, 996, 1016
TspGWI	ACGGA	1 cut(s)	438
TspRI	CASTG	3 cut(s)	1057, 1309, 1647
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	1 cut(s)	1022
XceI	RCATGY	2 cut(s)	86, 529
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53
XmiI	GTMKAC	2 cut(s)	1077, 1382
XmnI	GAANNNNTTC	1 cut(s)	735
XspI	CTAG	5 cut(s)	516, 726, 741, 909, 1122
ZrmI	AGTACT	1 cut(s)	976

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.