Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010758

Physical Location & Seq

Genomic Coordinates Reverse (-)

50166523 .. 50167233

Gene Structure 711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0391600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGACGGAAATCACCAACCTGAGCTCCGACGTGACGGAGCTGATCCTCTCCTACCTCCCCATCCCGACCCTCGTCCGAGCCTCCACCGTCTGCAAGCTCTGGCAATCCATCATCTCCTCCACCACCTTCTCCGCCACGCAAACCCAAACCCAAACCCAATCCCACCCTTGGTTCTTCCTCTACGGCATCCACAACACCTCCTCCAAGAACAACCAGTCCTTCGCCTTCGACCCTCTCTCCAACCGCTGGCTCCGCCTCCCCACCACTACTCCCACTCCTGCTTCCTCGGCGTCGACGGCTTCTTCCTCATCACCGCCCCCAACTTCACCTACTCCAGAATCCTCAAGCGCTCTTGGCGCTCCACCTCGCCTCTCTACTTCTCCCGCATCAACCCTCTTCTCGGCGTTTTCGACTCCGGCTCTCACCTCCCCAACTTCATCGTCGTCGGCGGTGTCAGATTCATCGGCAACTTGGTCGACATCGAGGACCGCTTGGTCGTCGAGATCTACAACCCCGACTCCGATTCCTGGCAGCTCTGTCCTCCTCTCCCTGCTGATTTCAGATCCGGCAATTCCTCCTAGTCCTTGTCATCCGCCCTCTTCAAAGGGAGGTTCTCCGGTGGTTGCAGAGGAAGAGAAGAAGAAGAAGAAGAGAGGTCGAGGGAGAGAGAGACTGTGCGGCAGGAGAGAGGGAGGGAGAGAGAAAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

236

Amino Acids

25.0

Weight (kDa)

9.95

Isoelectric Point (pI)

69.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	4 - 41	1.2e-08	F-box domain
F-box-like	PF12937	10 - 41	3.1e-07	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72570
fragaria_vesca	FvH4_6g34710
malus_domestica	MD00G1092000.v1.1 MD09G1183700.v1.1
prunus_persica	Prupe.3G042000_v2.0.a1
pyrus_communis	pycom09g10110
rosa_chinensis	RchiOBHm_Chr2g0145271
rosa_laevigata	RLG00000020135
rosa_multiflora	Rmu_sc0001298.1_g000029
rosa_roxburghii	Rroxscaffold_2G00100770
rosa_rugosa	Rorug02G0391600
rosa_samantha	Rh2AG444400 Rh2AG444500 Rh2BG455400 Rh2BG455500 Rh2CG431400 Rh2CG431500 Rh2DG465400 Rh2DG465500
rosa_wichuraiana	Rw2G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	493
AccB7I	CCANNNNNTGG	1 cut(s)	246
AccI	GTMKAC	2 cut(s)	293, 476
AciI	CCGC	9 cut(s)	132, 244, 253, 314, 384, 449, 489, 593, 678
AclWI	GGATC	2 cut(s)	37, 557
AcyI	GRCGYC	1 cut(s)	290
AfeI	AGCGCT	1 cut(s)	349
AfiI	CCNNNNNNNGG	4 cut(s)	168, 246, 400, 527
AgsI	TTSAA	1 cut(s)	603
AjiI	CACGTC	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	526
AloI	GAACNNNNNNTCC	2 cut(s)	200, 232
AluBI	AGCT	4 cut(s)	24, 40, 97, 534
AluI	AGCT	4 cut(s)	24, 40, 97, 534
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	1 cut(s)	664
AlwI	GGATC	2 cut(s)	37, 557
Aor51HI	AGCGCT	1 cut(s)	349
ApeKI	GCWGC	1 cut(s)	531
AspLEI	GCGC	2 cut(s)	350, 359
AspS9I	GGNCC	1 cut(s)	486
AsuHPI	GGTGA	4 cut(s)	4, 303, 318, 415
AvaII	GGWCC	1 cut(s)	486
BanII	GRGCYC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	543
BccI	CCATC	2 cut(s)	68, 116
BceAI	ACGGC	2 cut(s)	199, 312
BcgI	CGANNNNNNTGC	2 cut(s)	456, 490
BciT130I	CCWGG	1 cut(s)	528
BcoDI	GTCTC	1 cut(s)	664
BfaI	CTAG	1 cut(s)	579
BfoI	RGCGCY	2 cut(s)	351, 360
BglII	AGATCT	1 cut(s)	503
BisI	GCNGC	2 cut(s)	532, 679
BlsI	GCNGC	2 cut(s)	533, 680
Bme1390I	CCNGG	1 cut(s)	528
Bme18I	GGWCC	1 cut(s)	486
BmgBI	CACGTC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	486
BmiI	GGNNCC	1 cut(s)	251
BmrFI	CCNGG	1 cut(s)	528
BmsI	GCATC	2 cut(s)	195, 395
BoxI	GACNNNNGTC	1 cut(s)	71
BpmI	CTGGAG	1 cut(s)	318
Bpu10I	CCTNAGC	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	328
BsaHI	GRCGYC	1 cut(s)	290
BsaJI	CCNNGG	2 cut(s)	167, 285
BsaWI	WCCGGW	1 cut(s)	616
Bsc4I	CCNNNNNNNGG	4 cut(s)	168, 246, 400, 527
Bse1I	ACTGG	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	2 cut(s)	167, 285
BseGI	GGATG	3 cut(s)	60, 186, 589
BseLI	CCNNNNNNNGG	4 cut(s)	168, 246, 400, 527
BseMII	CTCAG	1 cut(s)	11
BseNI	ACTGG	1 cut(s)	214
BseRI	GAGGAG	3 cut(s)	106, 190, 533
BseXI	GCAGC	1 cut(s)	543
BsiHKAI	GWGCWC	1 cut(s)	26
BsiSI	CCGG	3 cut(s)	416, 566, 617
BslI	CCNNNNNNNGG	4 cut(s)	168, 246, 400, 527
BsmAI	GTCTC	1 cut(s)	664
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp143I	GATC	3 cut(s)	42, 503, 562
BspACI	CCGC	9 cut(s)	132, 244, 253, 314, 384, 449, 489, 593, 678
BspCNI	CTCAG	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	251
BspPI	GGATC	2 cut(s)	37, 557
BsrI	ACTGG	1 cut(s)	214
BssECI	CCNNGG	2 cut(s)	167, 285
BssMI	GATC	3 cut(s)	42, 503, 562
BssNI	GRCGYC	1 cut(s)	290
BssT1I	CCWWGG	1 cut(s)	167
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	2 cut(s)	88, 675
Bst6I	CTCTTC	4 cut(s)	401, 604, 627, 644
BstACI	GRCGYC	1 cut(s)	290
BstC8I	GCNNGC	2 cut(s)	95, 248
BstDEI	CTNAG	1 cut(s)	20
BstF5I	GGATG	3 cut(s)	60, 186, 589
BstH2I	RGCGCY	2 cut(s)	351, 360
BstHHI	GCGC	2 cut(s)	350, 359
BstKTI	GATC	3 cut(s)	45, 506, 565
BstMAI	GTCTC	1 cut(s)	664
BstMBI	GATC	3 cut(s)	42, 503, 562
BstMWI	GCNNNNNNNGC	5 cut(s)	252, 287, 296, 354, 356
BstNI	CCWGG	1 cut(s)	528
BstPAI	GACNNNNGTC	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	526
BstV1I	GCAGC	1 cut(s)	543
BstX2I	RGATCY	2 cut(s)	503, 562
BstYI	RGATCY	2 cut(s)	503, 562
BtrI	CACGTC	1 cut(s)	31
BtsCI	GGATG	3 cut(s)	60, 186, 589
Cac8I	GCNNGC	2 cut(s)	95, 248
CfoI	GCGC	2 cut(s)	350, 359
Cfr13I	GGNCC	1 cut(s)	486
CseI	GACGC	1 cut(s)	279
CviJI	RGCY	8 cut(s)	24, 40, 80, 97, 250, 299, 419, 534
CviKI_1	RGCY	8 cut(s)	24, 40, 80, 97, 250, 299, 419, 534
DdeI	CTNAG	1 cut(s)	20
DpnI	GATC	3 cut(s)	44, 505, 564
DpnII	GATC	3 cut(s)	42, 503, 562
DrdI	GACNNNNNNGTC	1 cut(s)	493
DseDI	GACNNNNNNGTC	1 cut(s)	493
Eam1104I	CTCTTC	4 cut(s)	401, 604, 627, 644
EarI	CTCTTC	4 cut(s)	401, 604, 627, 644
EciI	GGCGGA	3 cut(s)	121, 242, 582
Ecl136II	GAGCTC	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	167
Eco24I	GRGCYC	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	486
Eco47III	AGCGCT	1 cut(s)	349
Eco53kI	GAGCTC	1 cut(s)	24
EcoICRI	GAGCTC	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	526
EcoT14I	CCWWGG	1 cut(s)	167
EcoT38I	GRGCYC	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	167
FaiI	YATR	1 cut(s)	709
FauI	CCCGC	1 cut(s)	391
FblI	GTMKAC	2 cut(s)	293, 476
Fnu4HI	GCNGC	2 cut(s)	532, 679
FokI	GGATG	3 cut(s)	47, 173, 576
FriOI	GRGCYC	1 cut(s)	26
Fsp4HI	GCNGC	2 cut(s)	532, 679
FspBI	CTAG	1 cut(s)	579
GlaI	GCGC	2 cut(s)	349, 358
GluI	GCNGC	2 cut(s)	532, 679
GsuI	CTGGAG	1 cut(s)	318
HaeII	RGCGCY	2 cut(s)	351, 360
HapII	CCGG	3 cut(s)	416, 566, 617
HgaI	GACGC	1 cut(s)	279
HhaI	GCGC	2 cut(s)	350, 359
Hin1I	GRCGYC	1 cut(s)	290
Hin6I	GCGC	2 cut(s)	348, 357
HinP1I	GCGC	2 cut(s)	348, 357
HincII	GTYRAC	2 cut(s)	294, 477
HindII	GTYRAC	2 cut(s)	294, 477
HinfI	GANTC	5 cut(s)	338, 412, 458, 517, 523
HpaII	CCGG	3 cut(s)	416, 566, 617
HphI	GGTGA	4 cut(s)	4, 303, 318, 415
Hpy166II	GTNNAC	2 cut(s)	294, 477
Hpy188I	TCNGA	5 cut(s)	28, 77, 457, 522, 562
Hpy188III	TCNNGA	3 cut(s)	64, 335, 501
Hpy8I	GTNNAC	2 cut(s)	294, 477
Hpy99I	CGWCG	6 cut(s)	32, 295, 298, 445, 448, 502
HpyAV	CCTTC	3 cut(s)	136, 229, 235
HpyCH4III	ACNGT	2 cut(s)	88, 675
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	2 cut(s)	93, 626
HpyF10VI	GCNNNNNNNGC	5 cut(s)	252, 287, 296, 354, 356
HpyF3I	CTNAG	1 cut(s)	20
HpySE526I	ACGT	1 cut(s)	30
Hsp92I	GRCGYC	1 cut(s)	290
HspAI	GCGC	2 cut(s)	348, 357
Kzo9I	GATC	3 cut(s)	42, 503, 562
LmnI	GCTCC	4 cut(s)	29, 37, 255, 364
Lsp1109I	GCAGC	1 cut(s)	543
LweI	GCATC	2 cut(s)	195, 395
MaeI	CTAG	1 cut(s)	579
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	3 cut(s)	44, 505, 564
MboI	GATC	3 cut(s)	42, 503, 562
MflI	RGATCY	2 cut(s)	503, 562
MhlI	GDGCHC	1 cut(s)	26
MluCI	AATT	1 cut(s)	570
MlyI	GAGTC	2 cut(s)	406, 511
MmeI	TCCRAC	2 cut(s)	51, 264
MspA1I	CMGCKG	1 cut(s)	246
MspI	CCGG	3 cut(s)	416, 566, 617
MspR9I	CCNGG	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	5 cut(s)	252, 287, 296, 354, 356
NdeII	GATC	3 cut(s)	42, 503, 562
NlaIV	GGNNCC	1 cut(s)	251
NmeAIII	GCCGAG	2 cut(s)	266, 380
NmuCI	GTSAC	1 cut(s)	31
PcsI	WCGNNNNNNNCGW	1 cut(s)	407
PfeI	GAWTC	3 cut(s)	338, 458, 523
PflMI	CCANNNNNTGG	1 cut(s)	246
PkrI	GCNGC	2 cut(s)	533, 680
PleI	GAGTC	2 cut(s)	406, 511
PpsI	GAGTC	2 cut(s)	406, 511
PshAI	GACNNNNGTC	1 cut(s)	71
Psp124BI	GAGCTC	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	1 cut(s)	251
PspPI	GGNCC	1 cut(s)	486
PsuI	RGATCY	2 cut(s)	503, 562
SacI	GAGCTC	1 cut(s)	26
SalI	GTCGAC	2 cut(s)	292, 475
SatI	GCNGC	2 cut(s)	532, 679
Sau3AI	GATC	3 cut(s)	42, 503, 562
Sau96I	GGNCC	1 cut(s)	486
SchI	GAGTC	2 cut(s)	406, 511
ScrFI	CCNGG	1 cut(s)	528
SduI	GDGCHC	1 cut(s)	26
SfaNI	GCATC	2 cut(s)	195, 395
SgrDI	CGTCGACG	1 cut(s)	292
SinI	GGWCC	1 cut(s)	486
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
Sse9I	AATT	1 cut(s)	570
SsiI	CCGC	9 cut(s)	132, 244, 253, 314, 384, 449, 489, 593, 678
SspMI	CTAG	1 cut(s)	579
SstI	GAGCTC	1 cut(s)	26
StyD4I	CCNGG	1 cut(s)	526
StyI	CCWWGG	1 cut(s)	167
TaaI	ACNGT	2 cut(s)	88, 675
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	7 cut(s)	228, 293, 410, 476, 482, 500, 658
TasI	AATT	1 cut(s)	570
TauI	GCSGC	1 cut(s)	681
TfiI	GAWTC	3 cut(s)	338, 458, 523
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	1 cut(s)	531
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	2 cut(s)	426, 450
TspGWI	ACGGA	2 cut(s)	20, 50
Van91I	CCANNNNNTGG	1 cut(s)	246
VpaK11BI	GGWCC	1 cut(s)	486
XmiI	GTMKAC	2 cut(s)	293, 476
XspI	CTAG	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.