Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0010758

Physical Location & Seq

Genomic Coordinates Forward (+)

64478364 .. 64479446

Gene Structure 1083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG455400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGAGTAATTGGCTGGGATTCTCTCTCACTCCCCACCTGAGAATCCATGAAGGCTTTGATGGAAGAGAAGAAGATCAGCAAGAACAAGACCATGGAGTTGTGGGTTTCCCTCCTCACATGTCAGTCATGCCTTTGCGCTCTGATGGTTCTCTTTGCTTTGCTGCTGACCCTTTCAGGCGTCCTAATGGTTCTGAAGATTGGAGGTCTTATGAGAATAGCATGGTGGGTGCAACAAGTGTGACAAACCCAGTTGATGATGATGAAGAGGGTCCTAAGCTCGAGGATTTCTTGGGAAGTTGCTACTCAAACTCACCACCTGGTGATGAAACCAAAGTTTACTGCCAAAACCAAGAGGACTCTAAAATTAATGTCAATGAGGCCCCAAATTTCAGCAACCCTAATAGTGAAATAGAAGCCAATTCCACAGACCCATCTCATCATCAGAGCTTGATTCAGCCTTACAGCCATTACTATGCAAACCCACAAAGTGGCGGTGCCCTTGTCCCGTGTACCAATGGCATGTACAAGTCTTGGTTAGGCCAAACTGTAGTGGTTCCATACGCTGATGTGAAATCACCATCTGATCAGGAAAATGGTAGCAATAACTTTCAGTCTAATCTCTCGCTGACTATGAGTCCGACCTTGCAAAATGGTGGTATGCTTCCAATTTCTCAAGTGCAAATGGTGGAGAGCAAGAAAAGGCCAGGTGGGAAGTCCTCCGCAAGAGAACCAGTCACTCGCAAATCTATTGATACTTTTGGGCAGAGAACTTCTCAGTATCGTGGTGTAACAAGGCATAGATGGACTGGGAGATACGAGGCCCATCTGTGGGATAACAGTTGCAGAAAAGAAGGACAAACAAGGAAAGGAAGGCAAGGTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

294

Amino Acids

32.75

Weight (kDa)

5.61

Isoelectric Point (pI)

60.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72570
fragaria_vesca	FvH4_6g34710
malus_domestica	MD00G1092000.v1.1 MD09G1183700.v1.1
prunus_persica	Prupe.3G042000_v2.0.a1
pyrus_communis	pycom09g10110
rosa_chinensis	RchiOBHm_Chr2g0145271
rosa_laevigata	RLG00000020135
rosa_multiflora	Rmu_sc0001298.1_g000029
rosa_roxburghii	Rroxscaffold_2G00100770
rosa_rugosa	Rorug02G0391600
rosa_samantha	Rh2AG444400 Rh2AG444500 Rh2BG455400 Rh2BG455500 Rh2CG431400 Rh2CG431500 Rh2DG465400 Rh2DG465500
rosa_wichuraiana	Rw2G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	494
AccB7I	CCANNNNNTGG	1 cut(s)	488
AciI	CCGC	2 cut(s)	492, 720
AcsI	RAATTY	1 cut(s)	385
AcuI	CTGAAG	1 cut(s)	213
AcyI	GRCGYC	1 cut(s)	178
AdeI	CACNNNGTG	2 cut(s)	320, 488
AfaI	GTAC	2 cut(s)	511, 524
AfiI	CCNNNNNNNGG	3 cut(s)	488, 828, 829
AflIII	ACRYGT	1 cut(s)	117
AhdI	GACNNNNNGTC	1 cut(s)	633
AjnI	CCWGG	2 cut(s)	316, 703
AluBI	AGCT	2 cut(s)	277, 447
AluI	AGCT	2 cut(s)	277, 447
Ama87I	CYCGRG	1 cut(s)	278
AoxI	GGCC	4 cut(s)	378, 538, 701, 819
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	1 cut(s)	385
AseI	ATTAAT	1 cut(s)	366
AspLEI	GCGC	1 cut(s)	138
AspS9I	GGNCC	3 cut(s)	269, 379, 820
AsuHPI	GGTGA	3 cut(s)	303, 332, 567
AvaI	CYCGRG	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	269
BaeGI	GKGCMC	1 cut(s)	499
BanI	GGYRCC	1 cut(s)	494
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	6 cut(s)	53, 137, 439, 586, 795, 831
BciT130I	CCWGG	2 cut(s)	318, 705
BclI	TGATCA	1 cut(s)	583
BfmI	CTRYAG	1 cut(s)	546
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
Bme1390I	CCNGG	2 cut(s)	318, 705
Bme18I	GGWCC	1 cut(s)	269
BmeRI	GACNNNNNGTC	1 cut(s)	633
BmeT110I	CYCGRG	1 cut(s)	278
BmgT120I	GGNCC	3 cut(s)	269, 379, 820
BmiI	GGNNCC	4 cut(s)	270, 381, 496, 555
BmrFI	CCNGG	2 cut(s)	318, 705
BmrI	ACTGGG	2 cut(s)	242, 816
BmuI	ACTGGG	2 cut(s)	242, 816
BplI	GAGNNNNNCTC	2 cut(s)	757, 789
Bpu10I	CCTNAGC	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	657
BsaHI	GRCGYC	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	91
Bsc4I	CCNNNNNNNGG	3 cut(s)	488, 828, 829
Bse1I	ACTGG	3 cut(s)	248, 731, 811
BseBI	CCWGG	2 cut(s)	318, 705
BseDI	CCNNGG	1 cut(s)	91
BseLI	CCNNNNNNNGG	3 cut(s)	488, 828, 829
BseMII	CTCAG	2 cut(s)	29, 788
BseNI	ACTGG	3 cut(s)	248, 731, 811
BseRI	GAGGAG	1 cut(s)	102
BseSI	GKGCMC	1 cut(s)	499
BseXI	GCAGC	1 cut(s)	148
BseYI	CCCAGC	1 cut(s)	13
BshFI	GGCC	4 cut(s)	380, 540, 703, 821
BshNI	GGYRCC	1 cut(s)	494
BsiHKCI	CYCGRG	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	488
BslI	CCNNNNNNNGG	3 cut(s)	488, 828, 829
BsmFI	GGGAC	1 cut(s)	488
BsnI	GGCC	4 cut(s)	380, 540, 703, 821
BsoBI	CYCGRG	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	499
Bsp1407I	TGTACA	1 cut(s)	522
Bsp143I	GATC	2 cut(s)	73, 583
Bsp19I	CCATGG	1 cut(s)	91
BspACI	CCGC	2 cut(s)	492, 720
BspANI	GGCC	4 cut(s)	380, 540, 703, 821
BspCNI	CTCAG	2 cut(s)	30, 787
BspLI	GGNNCC	4 cut(s)	270, 381, 496, 555
BspT107I	GGYRCC	1 cut(s)	494
BsrGI	TGTACA	1 cut(s)	522
BsrI	ACTGG	3 cut(s)	248, 731, 811
BssECI	CCNNGG	1 cut(s)	91
BssMI	GATC	2 cut(s)	73, 583
BssNI	GRCGYC	1 cut(s)	178
BssT1I	CCWWGG	1 cut(s)	91
Bst2UI	CCWGG	2 cut(s)	318, 705
Bst4CI	ACNGT	2 cut(s)	547, 839
Bst6I	CTCTTC	2 cut(s)	58, 258
BstACI	GRCGYC	1 cut(s)	178
BstAUI	TGTACA	1 cut(s)	522
BstDEI	CTNAG	3 cut(s)	38, 273, 774
BstDSI	CCRYGG	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	2 cut(s)	76, 586
BstMBI	GATC	2 cut(s)	73, 583
BstNI	CCWGG	2 cut(s)	318, 705
BstNSI	RCATGY	2 cut(s)	121, 523
BstSCI	CCNGG	2 cut(s)	316, 703
BstSFI	CTRYAG	1 cut(s)	546
BstSLI	GKGCMC	1 cut(s)	499
BstV1I	GCAGC	1 cut(s)	148
BsuRI	GGCC	4 cut(s)	380, 540, 703, 821
BtgI	CCRYGG	1 cut(s)	91
CfoI	GCGC	1 cut(s)	138
Cfr13I	GGNCC	3 cut(s)	269, 379, 820
CseI	GACGC	1 cut(s)	167
CsiI	ACCWGGT	1 cut(s)	316
Csp6I	GTAC	2 cut(s)	510, 523
CviAII	CATG	6 cut(s)	47, 92, 118, 127, 220, 520
CviQI	GTAC	2 cut(s)	510, 523
DdeI	CTNAG	3 cut(s)	38, 273, 774
DpnI	GATC	2 cut(s)	75, 585
DpnII	GATC	2 cut(s)	73, 583
DraIII	CACNNNGTG	2 cut(s)	320, 488
DriI	GACNNNNNGTC	1 cut(s)	633
Eam1104I	CTCTTC	2 cut(s)	58, 258
Eam1105I	GACNNNNNGTC	1 cut(s)	633
EarI	CTCTTC	2 cut(s)	58, 258
Eco130I	CCWWGG	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	269
Eco57I	CTGAAG	1 cut(s)	213
Eco88I	CYCGRG	1 cut(s)	278
EcoO109I	RGGNCCY	2 cut(s)	269, 379
EcoRII	CCWGG	2 cut(s)	316, 703
EcoT14I	CCWWGG	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	6 cut(s)	50, 95, 121, 130, 223, 523
FaqI	GGGAC	1 cut(s)	488
FatI	CATG	6 cut(s)	46, 91, 117, 126, 219, 519
FbaI	TGATCA	1 cut(s)	583
Fnu4HI	GCNGC	1 cut(s)	162
Fsp4HI	GCNGC	1 cut(s)	162
GlaI	GCGC	1 cut(s)	137
GluI	GCNGC	1 cut(s)	162
GsaI	CCCAGC	1 cut(s)	17
HaeIII	GGCC	4 cut(s)	380, 540, 703, 821
HgaI	GACGC	1 cut(s)	167
HhaI	GCGC	1 cut(s)	138
Hin1I	GRCGYC	1 cut(s)	178
Hin1II	CATG	6 cut(s)	50, 95, 121, 130, 223, 523
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HinfI	GANTC	5 cut(s)	18, 42, 356, 451, 634
HphI	GGTGA	3 cut(s)	303, 332, 567
Hpy166II	GTNNAC	2 cut(s)	337, 510
Hpy188I	TCNGA	5 cut(s)	142, 193, 444, 583, 639
Hpy188III	TCNNGA	1 cut(s)	587
Hpy8I	GTNNAC	2 cut(s)	337, 510
HpyAV	CCTTC	3 cut(s)	44, 845, 864
HpyCH4III	ACNGT	2 cut(s)	547, 839
HpyCH4V	TGCA	5 cut(s)	230, 476, 646, 679, 843
HpyF3I	CTNAG	3 cut(s)	38, 273, 774
Hsp92I	GRCGYC	1 cut(s)	178
Hsp92II	CATG	6 cut(s)	50, 95, 121, 130, 223, 523
HspAI	GCGC	1 cut(s)	136
Ksp22I	TGATCA	1 cut(s)	583
Kzo9I	GATC	2 cut(s)	73, 583
Lsp1109I	GCAGC	1 cut(s)	148
MabI	ACCWGGT	1 cut(s)	316
MaeIII	GTNAC	3 cut(s)	238, 733, 787
MalI	GATC	2 cut(s)	75, 585
MboI	GATC	2 cut(s)	73, 583
MboII	GAAGA	5 cut(s)	75, 80, 83, 206, 275
MhlI	GDGCHC	1 cut(s)	499
MluCI	AATT	6 cut(s)	7, 363, 385, 418, 666, 880
MlyI	GAGTC	2 cut(s)	350, 643
MmeI	TCCRAC	1 cut(s)	662
MnlI	CCTC	9 cut(s)	120, 123, 195, 259, 274, 346, 370, 727, 811
MseI	TTAA	1 cut(s)	366
MslI	CAYNNNNRTG	1 cut(s)	471
MspR9I	CCNGG	2 cut(s)	318, 705
MvaI	CCWGG	2 cut(s)	318, 705
NcoI	CCATGG	1 cut(s)	91
NdeII	GATC	2 cut(s)	73, 583
NlaIII	CATG	6 cut(s)	50, 95, 121, 130, 223, 523
NlaIV	GGNNCC	4 cut(s)	270, 381, 496, 555
NmuCI	GTSAC	2 cut(s)	238, 733
NspI	RCATGY	2 cut(s)	121, 523
PaeR7I	CTCGAG	1 cut(s)	278
PciI	ACATGT	1 cut(s)	117
PfeI	GAWTC	3 cut(s)	18, 42, 451
PflMI	CCANNNNNTGG	1 cut(s)	488
PkrI	GCNGC	1 cut(s)	163
PleI	GAGTC	2 cut(s)	350, 642
PpsI	GAGTC	2 cut(s)	350, 642
PpuMI	RGGWCCY	1 cut(s)	269
PscI	ACATGT	1 cut(s)	117
PshBI	ATTAAT	1 cut(s)	366
Psp5II	RGGWCCY	1 cut(s)	269
Psp6I	CCWGG	2 cut(s)	316, 703
PspFI	CCCAGC	1 cut(s)	13
PspGI	CCWGG	2 cut(s)	316, 703
PspN4I	GGNNCC	4 cut(s)	270, 381, 496, 555
PspPI	GGNCC	3 cut(s)	269, 379, 820
PspPPI	RGGWCCY	1 cut(s)	269
PspXI	VCTCGAGB	1 cut(s)	278
RsaI	GTAC	2 cut(s)	511, 524
RsaNI	GTAC	2 cut(s)	510, 523
RseI	CAYNNNNRTG	1 cut(s)	471
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	2 cut(s)	73, 583
Sau96I	GGNCC	3 cut(s)	269, 379, 820
SchI	GAGTC	2 cut(s)	350, 643
ScrFI	CCNGG	2 cut(s)	318, 705
SduI	GDGCHC	1 cut(s)	499
SetI	ASST	8 cut(s)	39, 206, 279, 319, 449, 644, 709, 880
SexAI	ACCWGGT	1 cut(s)	316
SfcI	CTRYAG	1 cut(s)	546
Sfr274I	CTCGAG	1 cut(s)	278
SinI	GGWCC	1 cut(s)	269
SlaI	CTCGAG	1 cut(s)	278
SmiMI	CAYNNNNRTG	1 cut(s)	471
SmlI	CTYRAG	2 cut(s)	278, 672
SmoI	CTYRAG	2 cut(s)	278, 672
Sse9I	AATT	6 cut(s)	7, 363, 385, 418, 666, 880
SsiI	CCGC	2 cut(s)	492, 720
StyD4I	CCNGG	2 cut(s)	316, 703
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	2 cut(s)	547, 839
TaqI	TCGA	1 cut(s)	279
TasI	AATT	6 cut(s)	7, 363, 385, 418, 666, 880
TatI	WGTACW	1 cut(s)	522
TfiI	GAWTC	3 cut(s)	18, 42, 451
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TseFI	GTSAC	2 cut(s)	238, 733
TseI	GCWGC	1 cut(s)	161
Tsp45I	GTSAC	2 cut(s)	238, 733
TspDTI	ATGAA	3 cut(s)	63, 276, 339
Van91I	CCANNNNNTGG	1 cut(s)	488
VpaK11BI	GGWCC	1 cut(s)	269
VspI	ATTAAT	1 cut(s)	366
XapI	RAATTY	1 cut(s)	385
XceI	RCATGY	2 cut(s)	121, 523
XhoI	CTCGAG	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.