Rh2AG444500

AP2-like ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0010758
Physical Location & Seq
Forward (+)
65687151 .. 65688255
1105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG444500.1

Sequence Viewer

Length: 729 bp
ATGAAGACCATGACAAGGCAAGAATTTGTAGCCAACTTGAGGAGGAAAAGCAGTGGGTTTTCAAGGGGAGCTTCTGTGTACAGAGGAGTGACAAGACACCATCAACATGGAAGGTGGCAAGCTAGAATTGGAAGGGTTGCTGGAAACAAGGATTTGTACCTTGGAACATTTAGCACACAAGAAGAAGCAGCTGAGGCTTATGACATAGCAGCAATCAAGTTTAGGGGCACAAGTGCTGTGACCAACTTTGACATGAGTAGGTATGATGTAAAGAGGATTTGCTCAAGCTCCACACTCATTACAAGTGACCTGGCCAAACGCCCATCACCAAAAGACCCGGCTCCAGCAGCACCAAATGATCAGGAGTTCAATTCTTGTGCTTCGTCTACTTCTTCACAACCCCTTTTGGCCATAACAAACAGCGAAGAACCTTGTGATGAGAATTTGGCTGAAATGGTGTGGAATGACAATCCAAACTCTGAGGCCAACACTGTGACATTGGCTGCCGCTTCAGGCAGCAGGAATTCTTCTTGCCCACAAAGCCCTAAATGCTGCGAATTTGGATCCAACAGTGAGTTTGGTCTCAGTGTAGGTGACTATTCTCATGCTTATTTCAGCTCTCTGCAGGGTGCTAAGTATGAAGATGGCAATGGTGGTAGTGACCATAGCCGGCTTGGGAATCTTGGGTTGGTTCAACAGGTCCCTATGTTTGCATTGTGGAATGATTGA

Protein Analysis

242

Amino Acids

26.3

Weight (kDa)

6.22

Isoelectric Point (pI)

54.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 25 - 76 8.1e-10 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010758)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G72570
fragaria_vesca FvH4_6g34710
malus_domestica MD00G1092000.v1.1 MD09G1183700.v1.1
prunus_persica Prupe.3G042000_v2.0.a1
pyrus_communis pycom09g10110
rosa_chinensis RchiOBHm_Chr2g0145271
rosa_laevigata RLG00000020135
rosa_multiflora Rmu_sc0001298.1_g000029
rosa_roxburghii Rroxscaffold_2G00100770
rosa_rugosa Rorug02G0391600
rosa_samantha Rh2AG444400 Rh2AG444500 Rh2BG455400 Rh2BG455500 Rh2CG431400 Rh2CG431500 Rh2DG465400 Rh2DG465500
rosa_wichuraiana Rw2G036320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 386
AciI CCGC 1 cut(s) 507
AclWI GGATC 2 cut(s) 558, 571
AcoI YGGCCR 2 cut(s) 312, 408
AcsI RAATTY 4 cut(s) 23, 442, 523, 557
AcuI CTGAAG 1 cut(s) 495
AfaI GTAC 2 cut(s) 80, 158
AfiI CCNNNNNNNGG 2 cut(s) 15, 39
AgsI TTSAA 3 cut(s) 63, 370, 695
AjnI CCWGG 1 cut(s) 309
AjuI GAANNNNNNNTTGG 2 cut(s) 671, 703
AluBI AGCT 5 cut(s) 71, 122, 191, 288, 618
AluI AGCT 5 cut(s) 71, 122, 191, 288, 618
Alw26I GTCTC 1 cut(s) 587
AlwI GGATC 2 cut(s) 558, 571
AoxI GGCC 3 cut(s) 312, 408, 483
ApeKI GCWGC 6 cut(s) 188, 209, 347, 503, 516, 552
ApoI RAATTY 4 cut(s) 23, 442, 523, 557
AspS9I GGNCC 1 cut(s) 700
AsuC2I CCSGG 1 cut(s) 338
AsuHPI GGTGA 2 cut(s) 318, 605
AvaII GGWCC 1 cut(s) 700
BaeGI GKGCMC 1 cut(s) 230
BalI TGGCCA 2 cut(s) 314, 410
BamHI GGATCC 1 cut(s) 563
BbsI GAAGAC 1 cut(s) 11
BbvCI CCTCAGC 1 cut(s) 192
BbvI GCAGC 6 cut(s) 200, 221, 359, 490, 528, 539
BccI CCATC 3 cut(s) 108, 331, 638
BciT130I CCWGG 1 cut(s) 311
BclI TGATCA 1 cut(s) 358
BcnI CCSGG 1 cut(s) 338
BcoDI GTCTC 1 cut(s) 587
BfaI CTAG 1 cut(s) 123
BfmI CTRYAG 1 cut(s) 623
BisI GCNGC 7 cut(s) 189, 210, 348, 504, 507, 517, 553
BlsI GCNGC 7 cut(s) 190, 211, 349, 505, 508, 518, 554
Bme1390I CCNGG 2 cut(s) 311, 338
Bme18I GGWCC 1 cut(s) 700
BmgT120I GGNCC 1 cut(s) 700
BmiI GGNNCC 3 cut(s) 342, 565, 702
BmrFI CCNGG 2 cut(s) 311, 338
BpiI GAAGAC 1 cut(s) 11
BpmI CTGGAG 1 cut(s) 327
Bpu10I CCTNAGC 1 cut(s) 192
BpuEI CTTGAG 2 cut(s) 58, 268
BpuMI CCSGG 1 cut(s) 338
BsaI GGTCTC 1 cut(s) 587
BsaJI CCNNGG 1 cut(s) 160
BsaXI ACNNNNNCTCC 2 cut(s) 60, 90
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 39
Bse118I RCCGGY 1 cut(s) 669
Bse3DI GCAATG 1 cut(s) 655
BseBI CCWGG 1 cut(s) 311
BseDI CCNNGG 1 cut(s) 160
BseLI CCNNNNNNNGG 2 cut(s) 15, 39
BseMI GCAATG 1 cut(s) 655
BseMII CTCAG 3 cut(s) 183, 471, 598
BseRI GAGGAG 2 cut(s) 55, 99
BseSI GKGCMC 1 cut(s) 230
BseXI GCAGC 6 cut(s) 200, 221, 359, 490, 528, 539
BshFI GGCC 3 cut(s) 314, 410, 485
BsiSI CCGG 2 cut(s) 338, 670
BslFI GGGAC 1 cut(s) 686
BslI CCNNNNNNNGG 2 cut(s) 15, 39
BsmAI GTCTC 1 cut(s) 587
BsmFI GGGAC 1 cut(s) 686
BsnI GGCC 3 cut(s) 314, 410, 485
Bso31I GGTCTC 1 cut(s) 587
Bsp1286I GDGCHC 1 cut(s) 230
Bsp1407I TGTACA 1 cut(s) 78
Bsp143I GATC 2 cut(s) 358, 563
BspACI CCGC 1 cut(s) 507
BspANI GGCC 3 cut(s) 314, 410, 485
BspCNI CTCAG 3 cut(s) 184, 472, 597
BspLI GGNNCC 3 cut(s) 342, 565, 702
BspMAI CTGCAG 1 cut(s) 627
BspPI GGATC 2 cut(s) 558, 571
BspTNI GGTCTC 1 cut(s) 587
BsrDI GCAATG 1 cut(s) 655
BsrFI RCCGGY 1 cut(s) 669
BsrGI TGTACA 1 cut(s) 78
BssAI RCCGGY 1 cut(s) 669
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 2 cut(s) 358, 563
BssT1I CCWWGG 1 cut(s) 160
Bst2UI CCWGG 1 cut(s) 311
Bst4CI ACNGT 2 cut(s) 493, 572
BstAUI TGTACA 1 cut(s) 78
BstC8I GCNNGC 2 cut(s) 120, 671
BstDEI CTNAG 4 cut(s) 192, 480, 584, 633
BstKTI GATC 2 cut(s) 361, 566
BstMAI GTCTC 1 cut(s) 587
BstMBI GATC 2 cut(s) 358, 563
BstMWI GCNNNNNNNGC 4 cut(s) 194, 347, 540, 549
BstNI CCWGG 1 cut(s) 311
BstSCI CCNGG 2 cut(s) 309, 336
BstSFI CTRYAG 1 cut(s) 623
BstSLI GKGCMC 1 cut(s) 230
BstV1I GCAGC 6 cut(s) 200, 221, 359, 490, 528, 539
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 563
BstXI CCANNNNNNTGG 1 cut(s) 107
BstYI RGATCY 1 cut(s) 563
BsuRI GGCC 3 cut(s) 314, 410, 485
BtsI GCAGTG 1 cut(s) 58
BtsIMutI CAGTG 4 cut(s) 58, 489, 577, 592
Cac8I GCNNGC 2 cut(s) 120, 671
Cfr10I RCCGGY 1 cut(s) 669
Cfr13I GGNCC 1 cut(s) 700
Csp6I GTAC 2 cut(s) 79, 157
CviAII CATG 4 cut(s) 10, 107, 253, 605
CviQI GTAC 2 cut(s) 79, 157
DdeI CTNAG 4 cut(s) 192, 480, 584, 633
DpnI GATC 2 cut(s) 360, 565
DpnII GATC 2 cut(s) 358, 563
EaeI YGGCCR 2 cut(s) 312, 408
Eco130I CCWWGG 1 cut(s) 160
Eco31I GGTCTC 1 cut(s) 587
Eco47I GGWCC 1 cut(s) 700
Eco57I CTGAAG 1 cut(s) 495
EcoO109I RGGNCCY 1 cut(s) 700
EcoRI GAATTC 1 cut(s) 523
EcoRII CCWGG 1 cut(s) 309
EcoT14I CCWWGG 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 160
FaeI CATG 4 cut(s) 13, 110, 256, 608
FalI AAGNNNNNCTT 2 cut(s) 55, 87
FaqI GGGAC 1 cut(s) 686
FatI CATG 4 cut(s) 9, 106, 252, 604
FbaI TGATCA 1 cut(s) 358
FblI GTMKAC 1 cut(s) 386
Fnu4HI GCNGC 7 cut(s) 189, 210, 348, 504, 507, 517, 553
Fsp4HI GCNGC 7 cut(s) 189, 210, 348, 504, 507, 517, 553
FspBI CTAG 1 cut(s) 123
GluI GCNGC 7 cut(s) 189, 210, 348, 504, 507, 517, 553
GsuI CTGGAG 1 cut(s) 327
HaeIII GGCC 3 cut(s) 314, 410, 485
HapII CCGG 2 cut(s) 338, 670
Hin1II CATG 4 cut(s) 13, 110, 256, 608
HinfI GANTC 1 cut(s) 679
HpaII CCGG 2 cut(s) 338, 670
HphI GGTGA 2 cut(s) 318, 605
Hpy166II GTNNAC 2 cut(s) 79, 387
Hpy188I TCNGA 1 cut(s) 481
Hpy188III TCNNGA 1 cut(s) 362
Hpy8I GTNNAC 2 cut(s) 79, 387
HpyAV CCTTC 2 cut(s) 105, 126
HpyCH4III ACNGT 2 cut(s) 493, 572
HpyCH4V TGCA 2 cut(s) 625, 713
HpyF10VI GCNNNNNNNGC 4 cut(s) 194, 347, 540, 549
HpyF3I CTNAG 4 cut(s) 192, 480, 584, 633
Hsp92II CATG 4 cut(s) 13, 110, 256, 608
KroI GCCGGC 1 cut(s) 669
KroNI GCCGGC 1 cut(s) 671
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 2 cut(s) 358, 563
LmnI GCTCC 3 cut(s) 68, 293, 346
Lsp1109I GCAGC 6 cut(s) 200, 221, 359, 490, 528, 539
MaeI CTAG 1 cut(s) 123
MaeIII GTNAC 6 cut(s) 88, 238, 305, 493, 593, 659
MalI GATC 2 cut(s) 360, 565
MboI GATC 2 cut(s) 358, 563
MboII GAAGA 6 cut(s) 16, 194, 384, 437, 519, 653
MflI RGATCY 1 cut(s) 563
MhlI GDGCHC 1 cut(s) 230
MlsI TGGCCA 2 cut(s) 314, 410
MluCI AATT 6 cut(s) 23, 126, 370, 442, 523, 557
MluNI TGGCCA 2 cut(s) 314, 410
MmeI TCCRAC 1 cut(s) 591
MnlI CCTC 6 cut(s) 33, 36, 77, 187, 267, 475
Mox20I TGGCCA 2 cut(s) 314, 410
MroNI GCCGGC 1 cut(s) 669
MscI TGGCCA 2 cut(s) 314, 410
MslI CAYNNNNRTG 1 cut(s) 105
Msp20I TGGCCA 2 cut(s) 314, 410
MspA1I CMGCKG 1 cut(s) 191
MspI CCGG 2 cut(s) 338, 670
MspR9I CCNGG 2 cut(s) 311, 338
MvaI CCWGG 1 cut(s) 311
MwoI GCNNNNNNNGC 4 cut(s) 194, 347, 540, 549
NaeI GCCGGC 1 cut(s) 671
NciI CCSGG 1 cut(s) 338
NdeII GATC 2 cut(s) 358, 563
NgoMIV GCCGGC 1 cut(s) 669
NlaIII CATG 4 cut(s) 13, 110, 256, 608
NlaIV GGNNCC 3 cut(s) 342, 565, 702
NmuCI GTSAC 6 cut(s) 88, 238, 305, 493, 593, 659
PdiI GCCGGC 1 cut(s) 671
PfeI GAWTC 1 cut(s) 679
PkrI GCNGC 7 cut(s) 190, 211, 349, 505, 508, 518, 554
PpuMI RGGWCCY 1 cut(s) 700
Psp5II RGGWCCY 1 cut(s) 700
Psp6I CCWGG 1 cut(s) 309
PspGI CCWGG 1 cut(s) 309
PspN4I GGNNCC 3 cut(s) 342, 565, 702
PspPI GGNCC 1 cut(s) 700
PspPPI RGGWCCY 1 cut(s) 700
PstI CTGCAG 1 cut(s) 627
PsuI RGATCY 1 cut(s) 563
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 2 cut(s) 80, 158
RsaNI GTAC 2 cut(s) 79, 157
RseI CAYNNNNRTG 1 cut(s) 105
SatI GCNGC 7 cut(s) 189, 210, 348, 504, 507, 517, 553
Sau3AI GATC 2 cut(s) 358, 563
Sau96I GGNCC 1 cut(s) 700
ScrFI CCNGG 2 cut(s) 311, 338
SduI GDGCHC 1 cut(s) 230
SfcI CTRYAG 1 cut(s) 623
SinI GGWCC 1 cut(s) 700
SmiMI CAYNNNNRTG 1 cut(s) 105
SmlI CTYRAG 2 cut(s) 37, 283
SmoI CTYRAG 2 cut(s) 37, 283
Sse9I AATT 6 cut(s) 23, 126, 370, 442, 523, 557
SsiI CCGC 1 cut(s) 507
SspMI CTAG 1 cut(s) 123
StyD4I CCNGG 2 cut(s) 309, 336
StyI CCWWGG 1 cut(s) 160
TaaI ACNGT 2 cut(s) 493, 572
TasI AATT 6 cut(s) 23, 126, 370, 442, 523, 557
TatI WGTACW 1 cut(s) 78
TauI GCSGC 1 cut(s) 509
TfiI GAWTC 1 cut(s) 679
TscAI CASTG 4 cut(s) 58, 496, 577, 592
TseFI GTSAC 6 cut(s) 88, 238, 305, 493, 593, 659
TseI GCWGC 6 cut(s) 188, 209, 347, 503, 516, 552
Tsp45I GTSAC 6 cut(s) 88, 238, 305, 493, 593, 659
TspDTI ATGAA 2 cut(s) 17, 654
TspRI CASTG 4 cut(s) 58, 496, 577, 592
VpaK11BI GGWCC 1 cut(s) 700
XapI RAATTY 4 cut(s) 23, 442, 523, 557
XcmI CCANNNNNNNNNTGG 1 cut(s) 671
XmiI GTMKAC 1 cut(s) 386
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.