Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0010758

Physical Location & Seq

Genomic Coordinates Reverse (-)

8254117 .. 8255114

Gene Structure 998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g10110.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGAGTAATTGGTTGGGATTCTCTCTGGCTCCACACTTGAGGATCCATGAAGGATTTGGTGGGAGGGAAGATGAACAAGAACATGTAGGAGGTGGAGGCTTCTCTTCTGAAATGACCATCATGCCCTTGCGCTCTGATGGTTCTCTCTGTGTTTCTGCTGACCCTTTCAGCCGCTCCAATGGCTCTGAAGATTGGAGATATGAGAACCAAATGGGTGCAACAAGTGAGACAGCTGCAGACCCAAACGAAGAGGGTCCAAAGCTTGAAGATTTCTTGGGCAGCTGCTACTCCAGCTCTCCTCCTCCAACTGATGAAACCAAAGCGTACAACTTCCACACCCAGCAAGACCAAAACCAAGACTCCCCCATCTCCCAAATCAACGTCAATGAATCCCCCAACTTCACCACCACCACACCCAGCAACGGAGAAATCGAACCCAGCAGAGATCACTTTATCAATAATCAACCCTACACCCATTACTGCAATACCCTGAACCCAGCACAAAGCCTTGTCCCTAGTAATGGCATGTACAAATCTTGGTTGGGCCAAACGCTGCCCTTTTGCGATGAGAAATCATTATGTGGTGGTGATCATCAGTCAGCTCTCTCACTCACTATGTGTCCAAGCTTGCAAAATGGTAATAATAATAATAATAATAATAATAATAATATGGGTGTAATTTCTCATCAACAAATCCAAATAGTGGATAACAAGAAAAGGGCTGTTGGGAAATCTCCTGCTAGAGAACCAGTTCCTAGAAAATCTCTCGACACTTTTGGTCAGCGCACTTCTCAGTACCGGGGTGTCACCAGGTACATACCAACTATTTACTTTCTTTTCCTTTTCTTAGATTTTCTTTGTCGATACAAGCGATGGTGGGTGGCCGGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

298

Amino Acids

33.22

Weight (kDa)

5.36

Isoelectric Point (pI)

55.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72570
fragaria_vesca	FvH4_6g34710
malus_domestica	MD00G1092000.v1.1 MD09G1183700.v1.1
prunus_persica	Prupe.3G042000_v2.0.a1
pyrus_communis	pycom09g10110
rosa_chinensis	RchiOBHm_Chr2g0145271
rosa_laevigata	RLG00000020135
rosa_multiflora	Rmu_sc0001298.1_g000029
rosa_roxburghii	Rroxscaffold_2G00100770
rosa_rugosa	Rorug02G0391600
rosa_samantha	Rh2AG444400 Rh2AG444500 Rh2BG455400 Rh2BG455500 Rh2CG431400 Rh2CG431500 Rh2DG465400 Rh2DG465500
rosa_wichuraiana	Rw2G036320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	703
AccBSI	CCGCTC	1 cut(s)	174
AciI	CCGC	1 cut(s)	172
AclWI	GGATC	2 cut(s)	37, 50
AcoI	YGGCCR	1 cut(s)	882
AcuI	CTGAAG	1 cut(s)	207
AdeI	CACNNNGTG	1 cut(s)	618
AfaI	GTAC	4 cut(s)	326, 530, 797, 815
AfiI	CCNNNNNNNGG	3 cut(s)	422, 521, 703
AflIII	ACRYGT	1 cut(s)	82
AgsI	TTSAA	1 cut(s)	266
AjnI	CCWGG	1 cut(s)	809
AluBI	AGCT	6 cut(s)	233, 262, 282, 294, 602, 627
AluI	AGCT	6 cut(s)	233, 262, 282, 294, 602, 627
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	2 cut(s)	37, 50
AoxI	GGCC	2 cut(s)	544, 882
ApeKI	GCWGC	4 cut(s)	233, 279, 282, 553
Asp700I	GAANNNNTTC	1 cut(s)	750
AspLEI	GCGC	2 cut(s)	132, 786
AspS9I	GGNCC	2 cut(s)	254, 544
AsuC2I	CCSGG	1 cut(s)	800
AsuHPI	GGTGA	3 cut(s)	394, 599, 799
AvaII	GGWCC	1 cut(s)	254
BamHI	GGATCC	1 cut(s)	42
BbvI	GCAGC	4 cut(s)	220, 269, 291, 540
BccI	CCATC	4 cut(s)	125, 131, 374, 867
BciT130I	CCWGG	1 cut(s)	811
BclI	TGATCA	1 cut(s)	589
BcnI	CCSGG	1 cut(s)	800
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	3 cut(s)	516, 741, 756
BfmI	CTRYAG	1 cut(s)	234
BisI	GCNGC	5 cut(s)	172, 234, 280, 283, 554
BlsI	GCNGC	5 cut(s)	173, 235, 281, 284, 555
Bme1390I	CCNGG	2 cut(s)	800, 811
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	2 cut(s)	254, 544
BmiI	GGNNCC	3 cut(s)	30, 44, 255
BmrFI	CCNGG	2 cut(s)	800, 811
BpmI	CTGGAG	1 cut(s)	274
BpuEI	CTTGAG	1 cut(s)	58
BpuMI	CCSGG	1 cut(s)	800
BsaJI	CCNNGG	1 cut(s)	799
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	3 cut(s)	422, 521, 703
Bse1I	ACTGG	1 cut(s)	749
BseBI	CCWGG	1 cut(s)	811
BseDI	CCNNGG	1 cut(s)	799
BseLI	CCNNNNNNNGG	3 cut(s)	422, 521, 703
BseMII	CTCAG	1 cut(s)	806
BseNI	ACTGG	1 cut(s)	749
BseRI	GAGGAG	2 cut(s)	288, 291
BseXI	GCAGC	4 cut(s)	220, 269, 291, 540
BseYI	CCCAGC	4 cut(s)	339, 416, 437, 496
BshFI	GGCC	2 cut(s)	546, 884
BsiSI	CCGG	2 cut(s)	799, 885
BslFI	GGGAC	1 cut(s)	497
BslI	CCNNNNNNNGG	3 cut(s)	422, 521, 703
BsmAI	GTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	497
BsnI	GGCC	2 cut(s)	546, 884
Bsp1407I	TGTACA	1 cut(s)	528
Bsp143I	GATC	3 cut(s)	42, 445, 589
BspACI	CCGC	1 cut(s)	172
BspANI	GGCC	2 cut(s)	546, 884
BspCNI	CTCAG	1 cut(s)	805
BspLI	GGNNCC	3 cut(s)	30, 44, 255
BspMAI	CTGCAG	1 cut(s)	238
BspPI	GGATC	2 cut(s)	37, 50
BsrBI	CCGCTC	1 cut(s)	174
BsrGI	TGTACA	1 cut(s)	528
BsrI	ACTGG	1 cut(s)	749
BssECI	CCNNGG	1 cut(s)	799
BssMI	GATC	3 cut(s)	42, 445, 589
Bst2UI	CCWGG	1 cut(s)	811
Bst6I	CTCTTC	2 cut(s)	109, 243
BstAUI	TGTACA	1 cut(s)	528
BstC8I	GCNNGC	1 cut(s)	629
BstDEI	CTNAG	2 cut(s)	792, 847
BstHHI	GCGC	2 cut(s)	132, 786
BstKTI	GATC	3 cut(s)	45, 448, 592
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	3 cut(s)	42, 445, 589
BstMWI	GCNNNNNNNGC	2 cut(s)	180, 291
BstNI	CCWGG	1 cut(s)	811
BstNSI	RCATGY	2 cut(s)	86, 529
BstSCI	CCNGG	2 cut(s)	798, 809
BstSFI	CTRYAG	1 cut(s)	234
BstV1I	GCAGC	4 cut(s)	220, 269, 291, 540
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
BsuRI	GGCC	2 cut(s)	546, 884
BtgZI	GCGATG	2 cut(s)	579, 886
Cac8I	GCNNGC	1 cut(s)	629
CfoI	GCGC	2 cut(s)	132, 786
Cfr13I	GGNCC	2 cut(s)	254, 544
CsiI	ACCWGGT	1 cut(s)	809
Csp6I	GTAC	4 cut(s)	325, 529, 796, 814
CviAII	CATG	4 cut(s)	47, 83, 121, 526
CviQI	GTAC	4 cut(s)	325, 529, 796, 814
DdeI	CTNAG	2 cut(s)	792, 847
DpnI	GATC	3 cut(s)	44, 447, 591
DpnII	GATC	3 cut(s)	42, 445, 589
DraIII	CACNNNGTG	1 cut(s)	618
EaeI	YGGCCR	1 cut(s)	882
Eam1104I	CTCTTC	2 cut(s)	109, 243
EarI	CTCTTC	2 cut(s)	109, 243
Eco47I	GGWCC	1 cut(s)	254
Eco57I	CTGAAG	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	809
FaeI	CATG	4 cut(s)	50, 86, 124, 529
FaiI	YATR	9 cut(s)	48, 84, 122, 201, 527, 580, 617, 671, 818
FaqI	GGGAC	1 cut(s)	497
FatI	CATG	4 cut(s)	46, 82, 120, 525
FbaI	TGATCA	1 cut(s)	589
Fnu4HI	GCNGC	5 cut(s)	172, 234, 280, 283, 554
Fsp4HI	GCNGC	5 cut(s)	172, 234, 280, 283, 554
FspBI	CTAG	3 cut(s)	516, 741, 756
GlaI	GCGC	2 cut(s)	131, 785
GluI	GCNGC	5 cut(s)	172, 234, 280, 283, 554
GsaI	CCCAGC	4 cut(s)	343, 420, 441, 500
GsuI	CTGGAG	1 cut(s)	274
HaeIII	GGCC	2 cut(s)	546, 884
HapII	CCGG	2 cut(s)	799, 885
HhaI	GCGC	2 cut(s)	132, 786
Hin1II	CATG	4 cut(s)	50, 86, 124, 529
Hin6I	GCGC	2 cut(s)	130, 784
HinP1I	GCGC	2 cut(s)	130, 784
HindIII	AAGCTT	2 cut(s)	260, 625
HinfI	GANTC	3 cut(s)	18, 359, 389
HpaII	CCGG	2 cut(s)	799, 885
HphI	GGTGA	3 cut(s)	394, 599, 799
Hpy188I	TCNGA	3 cut(s)	109, 136, 187
Hpy188III	TCNNGA	1 cut(s)	767
HpyAV	CCTTC	1 cut(s)	44
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	4 cut(s)	218, 236, 483, 631
HpyF10VI	GCNNNNNNNGC	2 cut(s)	180, 291
HpyF3I	CTNAG	2 cut(s)	792, 847
HpySE526I	ACGT	1 cut(s)	381
Hsp92II	CATG	4 cut(s)	50, 86, 124, 529
HspAI	GCGC	2 cut(s)	130, 784
Ksp22I	TGATCA	1 cut(s)	589
Kzo9I	GATC	3 cut(s)	42, 445, 589
LmnI	GCTCC	2 cut(s)	34, 179
Lsp1109I	GCAGC	4 cut(s)	220, 269, 291, 540
MabI	ACCWGGT	1 cut(s)	809
MaeI	CTAG	3 cut(s)	516, 741, 756
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	805
MalI	GATC	3 cut(s)	44, 447, 591
MbiI	CCGCTC	1 cut(s)	174
MboI	GATC	3 cut(s)	42, 445, 589
MboII	GAAGA	5 cut(s)	80, 96, 200, 260, 278
MflI	RGATCY	1 cut(s)	42
MluCI	AATT	3 cut(s)	7, 678, 889
MlyI	GAGTC	1 cut(s)	353
MmeI	TCCRAC	1 cut(s)	329
MnlI	CCTC	7 cut(s)	33, 57, 83, 89, 244, 309, 312
MroXI	GAANNNNTTC	1 cut(s)	750
MspA1I	CMGCKG	2 cut(s)	233, 282
MspI	CCGG	2 cut(s)	799, 885
MspR9I	CCNGG	2 cut(s)	800, 811
MvaI	CCWGG	1 cut(s)	811
MwoI	GCNNNNNNNGC	2 cut(s)	180, 291
NciI	CCSGG	1 cut(s)	800
NdeII	GATC	3 cut(s)	42, 445, 589
NlaIII	CATG	4 cut(s)	50, 86, 124, 529
NlaIV	GGNNCC	3 cut(s)	30, 44, 255
NmuCI	GTSAC	1 cut(s)	805
NspI	RCATGY	2 cut(s)	86, 529
PciI	ACATGT	1 cut(s)	82
PcsI	WCGNNNNNNNCGW	2 cut(s)	429, 868
PdmI	GAANNNNTTC	1 cut(s)	750
PfeI	GAWTC	2 cut(s)	18, 389
PflMI	CCANNNNNTGG	1 cut(s)	703
PkrI	GCNGC	5 cut(s)	173, 235, 281, 284, 555
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
PscI	ACATGT	1 cut(s)	82
Psp6I	CCWGG	1 cut(s)	809
PspFI	CCCAGC	4 cut(s)	339, 416, 437, 496
PspGI	CCWGG	1 cut(s)	809
PspN4I	GGNNCC	3 cut(s)	30, 44, 255
PspPI	GGNCC	2 cut(s)	254, 544
PstI	CTGCAG	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	42
PvuII	CAGCTG	2 cut(s)	233, 282
RsaI	GTAC	4 cut(s)	326, 530, 797, 815
RsaNI	GTAC	4 cut(s)	325, 529, 796, 814
SatI	GCNGC	5 cut(s)	172, 234, 280, 283, 554
Sau3AI	GATC	3 cut(s)	42, 445, 589
Sau96I	GGNCC	2 cut(s)	254, 544
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	2 cut(s)	800, 811
SetI	ASST	9 cut(s)	94, 235, 264, 284, 296, 384, 604, 629, 815
SexAI	ACCWGGT	1 cut(s)	809
SfcI	CTRYAG	1 cut(s)	234
SinI	GGWCC	1 cut(s)	254
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
Sse9I	AATT	3 cut(s)	7, 678, 889
SsiI	CCGC	1 cut(s)	172
SspMI	CTAG	3 cut(s)	516, 741, 756
StyD4I	CCNGG	2 cut(s)	798, 809
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	3 cut(s)	432, 768, 862
TasI	AATT	3 cut(s)	7, 678, 889
TatI	WGTACW	1 cut(s)	528
TauI	GCSGC	1 cut(s)	174
TfiI	GAWTC	2 cut(s)	18, 389
TseFI	GTSAC	1 cut(s)	805
TseI	GCWGC	4 cut(s)	233, 279, 282, 553
Tsp45I	GTSAC	1 cut(s)	805
TspDTI	ATGAA	4 cut(s)	63, 87, 327, 402
TspGWI	ACGGA	1 cut(s)	438
Van91I	CCANNNNNTGG	1 cut(s)	703
VpaK11BI	GGWCC	1 cut(s)	254
XceI	RCATGY	2 cut(s)	86, 529
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53
XmnI	GAANNNNTTC	1 cut(s)	750
XspI	CTAG	3 cut(s)	516, 741, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.