Rroxscaffold_2G00100770

AP2-like ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
22615348 .. 22618696
3349 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00100770.1

Sequence Viewer

Length: 1725 bp
ATGAGTAATTGGCTGGGATTCTCTCTCACTCCCCACCTGCGAATCCATGAAGGCTTTGATGGAAGAGAAGAAGATCAGCAAGAACAAGACCATGGAGTCGTGGGTTTCCCTCCTCACATGTCAGTCATGCCTTTGCGCTCTGATGGTTCTCTTTGCTTTGCTGCTGACCCTTTCAGGCGTCCTAATGGTTCTGAAGATTGGAGATCTTATGAGAATAGCATGGTGGGTGCTACAAGTGTTACAAACCCAGTTGATGATGATGAAGAGGGTCCTAAGCTCGAGGATTTCTTGGGAAGCTGCTACTCAAACTCACCACCTGGTGATGAAACCAAAGTTTACTGCCAAAACCAAGAGGACTCTAAAATTAATGTCAATGAGGCCCCAAATTTCAGCAACCCTAATAGTGAAATAGAAGCCAATTCCACAGACCCATCTCATCATCAGAGCTTGATTCAGCCTTACAGCCATTACTATACAAACCCACAAAGTGGCGGTGCTCTTGTCCCGTGTACCAATGGCATGTACAAGTCTTGGTTAGGCCAAACTGTAGTGGTTCCATACGCTGATGTGAAATCACCATCTGATCAGGAAAATGGTCGCAATAACTTTCAGTCTAATCTCTCACTGACTATGAGTCCGACCTTGCAAAATGGTGGTATGCTTCCAATTTCCCAAGTGCAAATGGTGGAGAGCAAGAAAAGGCCAGGTGGGAAGTCCTCCGCAAGAGAACCAGTCACTCGCAAATCTATTGATACTTTTGGGCAGAGAACTTCTCAGTATCGTGGTGTAACAAGGCATAGATGGACTGGGAGATACGAGGCCCATCTGTGGGATAACAGTTGCAGAAAAGAAGGACAAACAAGGAAAGGAAGGCAAGGTGGATATGATAAGGAAGAAAGAGCAGCAAAGGCTTATGATTTAGCTGCACTCAAGTATTGGGGTCCAACTACTCATATTAACTTCCCTATAAGCACTTATGAGAAAGAGCTGGAAGAGATGAAGACCATGACAAGGCAAGAATTTGTAGCCAACTTGAGGAGGAAAAGCAGTGGGTTTTCAAGGGGAGCTTCTGTGTACAGAGGAGTGACAAGACACCATCAACATGGAAGGTGGCAAGCTAGAATTGGAAGGGTTGCTGGAAACAAGGATTTGTACCTTGGAACATTTAGCACACAAGAAGAAGCAGCTGAGGCTTATGACATAGCAGCAATCAAGTTTAGGGGCACAAGTGCTGTGACCAACTTTGACATGAGTAGGTATGATGTAAAGAGGATTTGCTCAAGCTCCACACTCATTACAAGTGACCTGGCCAAACGCCCATCACCAAAAGACCCGGCTCCAGCAGCACCAAATGATCAGGAGTTCAATTCTTGTGCTTCGTCTACTTCTTCACAACCCCTTTTGGCCATTACAAACAGCGAAGAACCTTGTGATGAGAATTTGGCTGAAATGGTGTGGAATGACAATCCAAACTCTGAGGCCAACACTGTGACATTGGCTGCTGCTTCAGGCAGCAGGAATTCTTCTTGCCCGCAAAGCCCTAAATGCTGTGAATTTGGATCCAACAGTGAGTTTGGTCTCAGTGTAGGTGACTATTCTCATGCTTATTTCAGCTCTCTGCAGGGTGCTAAGTATGAAGATGGCAATGGTGGTAGTGACCACAGCCGGCTTGGGAATCTTGGGTTGGTTCAACAGGTCCCTATGTTTGCACTGTGGAATGATTGA

Protein Analysis

574

Amino Acids

63.55

Weight (kDa)

5.74

Isoelectric Point (pI)

56.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 259 - 314 1.1e-07 AP2 domain
AP2 PF00847 357 - 408 2.9e-09 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010758)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 45
AasI GACNNNNNNGTC 1 cut(s) 95
Acc36I ACCTGC 1 cut(s) 45
AccB7I CCANNNNNTGG 1 cut(s) 488
AccI GTMKAC 1 cut(s) 1382
AciI CCGC 3 cut(s) 492, 720, 1532
AclWI GGATC 2 cut(s) 1554, 1567
AcoI YGGCCR 2 cut(s) 1308, 1404
AcsI RAATTY 5 cut(s) 385, 1019, 1438, 1519, 1553
AcuI CTGAAG 2 cut(s) 213, 1491
AcyI GRCGYC 1 cut(s) 178
AdeI CACNNNGTG 2 cut(s) 320, 488
AfaI GTAC 4 cut(s) 511, 524, 1076, 1154
AfiI CCNNNNNNNGG 5 cut(s) 488, 828, 829, 1011, 1035
AflIII ACRYGT 1 cut(s) 117
AgsI TTSAA 3 cut(s) 1059, 1366, 1691
AhdI GACNNNNNGTC 1 cut(s) 633
AjnI CCWGG 3 cut(s) 316, 703, 1305
AjuI GAANNNNNNNTTGG 2 cut(s) 1667, 1699
Alw21I GWGCWC 1 cut(s) 499
Alw26I GTCTC 1 cut(s) 1583
AlwI GGATC 2 cut(s) 1554, 1567
Ama87I CYCGRG 1 cut(s) 278
AoxI GGCC 7 cut(s) 378, 538, 701, 819, 1308, 1404, 1479
ApoI RAATTY 5 cut(s) 385, 1019, 1438, 1519, 1553
AseI ATTAAT 1 cut(s) 366
AspLEI GCGC 1 cut(s) 138
AspS9I GGNCC 5 cut(s) 269, 379, 820, 941, 1696
AsuC2I CCSGG 1 cut(s) 1334
AsuHPI GGTGA 5 cut(s) 303, 332, 567, 1314, 1601
AvaI CYCGRG 1 cut(s) 278
AvaII GGWCC 3 cut(s) 269, 941, 1696
BaeGI GKGCMC 1 cut(s) 1226
BalI TGGCCA 2 cut(s) 1310, 1406
BamHI GGATCC 1 cut(s) 1559
BbsI GAAGAC 1 cut(s) 1007
Bbv12I GWGCWC 1 cut(s) 499
BbvCI CCTCAGC 1 cut(s) 1188
BccI CCATC 9 cut(s) 53, 137, 439, 586, 795, 831, 1104, 1327, 1634
BciT130I CCWGG 3 cut(s) 318, 705, 1307
BclI TGATCA 2 cut(s) 583, 1354
BcnI CCSGG 1 cut(s) 1334
BcoDI GTCTC 1 cut(s) 1583
BfaI CTAG 1 cut(s) 1119
BfmI CTRYAG 2 cut(s) 546, 1619
BfuAI ACCTGC 1 cut(s) 45
BglII AGATCT 1 cut(s) 203
Bme1390I CCNGG 4 cut(s) 318, 705, 1307, 1334
Bme18I GGWCC 3 cut(s) 269, 941, 1696
BmeRI GACNNNNNGTC 1 cut(s) 633
BmeT110I CYCGRG 1 cut(s) 278
BmgT120I GGNCC 5 cut(s) 269, 379, 820, 941, 1696
BmiI GGNNCC 7 cut(s) 270, 381, 555, 942, 1338, 1561, 1698
BmrFI CCNGG 4 cut(s) 318, 705, 1307, 1334
BmrI ACTGGG 2 cut(s) 242, 816
BmuI ACTGGG 2 cut(s) 242, 816
BpiI GAAGAC 1 cut(s) 1007
BplI GAGNNNNNCTC 2 cut(s) 757, 789
BpmI CTGGAG 1 cut(s) 1323
Bpu10I CCTNAGC 2 cut(s) 273, 1188
BpuEI CTTGAG 3 cut(s) 914, 1054, 1264
BpuMI CCSGG 1 cut(s) 1334
BsaHI GRCGYC 1 cut(s) 178
BsaI GGTCTC 1 cut(s) 1583
BsaJI CCNNGG 2 cut(s) 91, 1156
BsaXI ACNNNNNCTCC 2 cut(s) 1056, 1086
Bsc4I CCNNNNNNNGG 5 cut(s) 488, 828, 829, 1011, 1035
Bse118I RCCGGY 1 cut(s) 1665
Bse1I ACTGG 3 cut(s) 248, 731, 811
Bse3DI GCAATG 1 cut(s) 1651
BseBI CCWGG 3 cut(s) 318, 705, 1307
BseDI CCNNGG 2 cut(s) 91, 1156
BseLI CCNNNNNNNGG 5 cut(s) 488, 828, 829, 1011, 1035
BseMI GCAATG 1 cut(s) 1651
BseMII CTCAG 4 cut(s) 788, 1179, 1467, 1594
BseNI ACTGG 3 cut(s) 248, 731, 811
BseRI GAGGAG 3 cut(s) 102, 1051, 1095
BseSI GKGCMC 1 cut(s) 1226
BseYI CCCAGC 1 cut(s) 13
BsgI GTGCAG 1 cut(s) 909
BshFI GGCC 7 cut(s) 380, 540, 703, 821, 1310, 1406, 1481
BsiHKAI GWGCWC 1 cut(s) 499
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 2 cut(s) 1334, 1666
BslFI GGGAC 2 cut(s) 488, 1682
BslI CCNNNNNNNGG 5 cut(s) 488, 828, 829, 1011, 1035
BsmAI GTCTC 1 cut(s) 1583
BsmFI GGGAC 2 cut(s) 488, 1682
BsnI GGCC 7 cut(s) 380, 540, 703, 821, 1310, 1406, 1481
Bso31I GGTCTC 1 cut(s) 1583
BsoBI CYCGRG 1 cut(s) 278
Bsp1286I GDGCHC 2 cut(s) 499, 1226
Bsp1407I TGTACA 2 cut(s) 522, 1074
Bsp143I GATC 5 cut(s) 73, 203, 583, 1354, 1559
Bsp19I CCATGG 1 cut(s) 91
BspACI CCGC 3 cut(s) 492, 720, 1532
BspANI GGCC 7 cut(s) 380, 540, 703, 821, 1310, 1406, 1481
BspCNI CTCAG 4 cut(s) 787, 1180, 1468, 1593
BspLI GGNNCC 7 cut(s) 270, 381, 555, 942, 1338, 1561, 1698
BspMAI CTGCAG 1 cut(s) 1623
BspMI ACCTGC 1 cut(s) 45
BspPI GGATC 2 cut(s) 1554, 1567
BspTNI GGTCTC 1 cut(s) 1583
BsrDI GCAATG 1 cut(s) 1651
BsrFI RCCGGY 1 cut(s) 1665
BsrGI TGTACA 2 cut(s) 522, 1074
BsrI ACTGG 3 cut(s) 248, 731, 811
BssAI RCCGGY 1 cut(s) 1665
BssECI CCNNGG 2 cut(s) 91, 1156
BssMI GATC 5 cut(s) 73, 203, 583, 1354, 1559
BssNI GRCGYC 1 cut(s) 178
BssT1I CCWWGG 2 cut(s) 91, 1156
Bst2UI CCWGG 3 cut(s) 318, 705, 1307
Bst4CI ACNGT 5 cut(s) 547, 839, 1489, 1568, 1713
Bst6I CTCTTC 3 cut(s) 58, 258, 987
BstACI GRCGYC 1 cut(s) 178
BstAUI TGTACA 2 cut(s) 522, 1074
BstC8I GCNNGC 3 cut(s) 1116, 1532, 1667
BstDEI CTNAG 6 cut(s) 273, 774, 1188, 1476, 1580, 1629
BstDSI CCRYGG 1 cut(s) 91
BstHHI GCGC 1 cut(s) 138
BstKTI GATC 5 cut(s) 76, 206, 586, 1357, 1562
BstMAI GTCTC 1 cut(s) 1583
BstMBI GATC 5 cut(s) 73, 203, 583, 1354, 1559
BstMWI GCNNNNNNNGC 5 cut(s) 908, 1190, 1343, 1536, 1545
BstNI CCWGG 3 cut(s) 318, 705, 1307
BstNSI RCATGY 2 cut(s) 121, 523
BstSCI CCNGG 4 cut(s) 316, 703, 1305, 1332
BstSFI CTRYAG 2 cut(s) 546, 1619
BstSLI GKGCMC 1 cut(s) 1226
BstV2I GAAGAC 1 cut(s) 1007
BstX2I RGATCY 2 cut(s) 203, 1559
BstXI CCANNNNNNTGG 1 cut(s) 1103
BstYI RGATCY 2 cut(s) 203, 1559
BsuRI GGCC 7 cut(s) 380, 540, 703, 821, 1310, 1406, 1481
BtgI CCRYGG 1 cut(s) 91
BtsI GCAGTG 1 cut(s) 1054
BtsIMutI CAGTG 6 cut(s) 623, 1054, 1485, 1573, 1588, 1709
BveI ACCTGC 1 cut(s) 45
Cac8I GCNNGC 3 cut(s) 1116, 1532, 1667
CfoI GCGC 1 cut(s) 138
Cfr10I RCCGGY 1 cut(s) 1665
Cfr13I GGNCC 5 cut(s) 269, 379, 820, 941, 1696
CseI GACGC 1 cut(s) 167
CsiI ACCWGGT 1 cut(s) 316
Csp6I GTAC 4 cut(s) 510, 523, 1075, 1153
CviQI GTAC 4 cut(s) 510, 523, 1075, 1153
DdeI CTNAG 6 cut(s) 273, 774, 1188, 1476, 1580, 1629
DpnI GATC 5 cut(s) 75, 205, 585, 1356, 1561
DpnII GATC 5 cut(s) 73, 203, 583, 1354, 1559
DraIII CACNNNGTG 2 cut(s) 320, 488
DrdI GACNNNNNNGTC 1 cut(s) 95
DriI GACNNNNNGTC 1 cut(s) 633
DseDI GACNNNNNNGTC 1 cut(s) 95
EaeI YGGCCR 2 cut(s) 1308, 1404
Eam1104I CTCTTC 3 cut(s) 58, 258, 987
Eam1105I GACNNNNNGTC 1 cut(s) 633
EarI CTCTTC 3 cut(s) 58, 258, 987
Eco130I CCWWGG 2 cut(s) 91, 1156
Eco31I GGTCTC 1 cut(s) 1583
Eco47I GGWCC 3 cut(s) 269, 941, 1696
Eco57I CTGAAG 2 cut(s) 213, 1491
Eco88I CYCGRG 1 cut(s) 278
EcoO109I RGGNCCY 3 cut(s) 269, 379, 1696
EcoRI GAATTC 1 cut(s) 1519
EcoRII CCWGG 3 cut(s) 316, 703, 1305
EcoT14I CCWWGG 2 cut(s) 91, 1156
ErhI CCWWGG 2 cut(s) 91, 1156
FalI AAGNNNNNCTT 2 cut(s) 1051, 1083
FaqI GGGAC 2 cut(s) 488, 1682
FauI CCCGC 1 cut(s) 1539
FbaI TGATCA 2 cut(s) 583, 1354
FblI GTMKAC 1 cut(s) 1382
FspBI CTAG 1 cut(s) 1119
GlaI GCGC 1 cut(s) 137
GsaI CCCAGC 1 cut(s) 17
GsuI CTGGAG 1 cut(s) 1323
HaeIII GGCC 7 cut(s) 380, 540, 703, 821, 1310, 1406, 1481
HapII CCGG 2 cut(s) 1334, 1666
HgaI GACGC 1 cut(s) 167
HhaI GCGC 1 cut(s) 138
Hin1I GRCGYC 1 cut(s) 178
Hin6I GCGC 1 cut(s) 136
HinP1I GCGC 1 cut(s) 136
HinfI GANTC 7 cut(s) 18, 42, 96, 356, 451, 634, 1675
HpaII CCGG 2 cut(s) 1334, 1666
HphI GGTGA 5 cut(s) 303, 332, 567, 1314, 1601
Hpy166II GTNNAC 4 cut(s) 337, 510, 1075, 1383
Hpy188I TCNGA 6 cut(s) 142, 193, 444, 583, 639, 1477
Hpy188III TCNNGA 2 cut(s) 587, 1358
Hpy8I GTNNAC 4 cut(s) 337, 510, 1075, 1383
HpyAV CCTTC 5 cut(s) 44, 845, 864, 1101, 1122
HpyCH4III ACNGT 5 cut(s) 547, 839, 1489, 1568, 1713
HpyCH4V TGCA 6 cut(s) 646, 679, 843, 926, 1621, 1709
HpyF10VI GCNNNNNNNGC 5 cut(s) 908, 1190, 1343, 1536, 1545
HpyF3I CTNAG 6 cut(s) 273, 774, 1188, 1476, 1580, 1629
Hsp92I GRCGYC 1 cut(s) 178
HspAI GCGC 1 cut(s) 136
KroI GCCGGC 1 cut(s) 1665
KroNI GCCGGC 1 cut(s) 1667
Ksp22I TGATCA 2 cut(s) 583, 1354
Kzo9I GATC 5 cut(s) 73, 203, 583, 1354, 1559
LmnI GCTCC 3 cut(s) 1064, 1289, 1342
MabI ACCWGGT 1 cut(s) 316
MaeI CTAG 1 cut(s) 1119
MaeIII GTNAC 9 cut(s) 238, 733, 787, 1084, 1234, 1301, 1489, 1589, 1655
MalI GATC 5 cut(s) 75, 205, 585, 1356, 1561
MboI GATC 5 cut(s) 73, 203, 583, 1354, 1559
MflI RGATCY 2 cut(s) 203, 1559
MhlI GDGCHC 2 cut(s) 499, 1226
MlsI TGGCCA 2 cut(s) 1310, 1406
MluNI TGGCCA 2 cut(s) 1310, 1406
MlyI GAGTC 3 cut(s) 105, 350, 643
MmeI TCCRAC 3 cut(s) 662, 968, 1587
Mox20I TGGCCA 2 cut(s) 1310, 1406
MroNI GCCGGC 1 cut(s) 1665
MscI TGGCCA 2 cut(s) 1310, 1406
MseI TTAA 2 cut(s) 366, 957
MslI CAYNNNNRTG 1 cut(s) 1101
Msp20I TGGCCA 2 cut(s) 1310, 1406
MspA1I CMGCKG 1 cut(s) 1187
MspI CCGG 2 cut(s) 1334, 1666
MspR9I CCNGG 4 cut(s) 318, 705, 1307, 1334
MvaI CCWGG 3 cut(s) 318, 705, 1307
MwoI GCNNNNNNNGC 5 cut(s) 908, 1190, 1343, 1536, 1545
NaeI GCCGGC 1 cut(s) 1667
NciI CCSGG 1 cut(s) 1334
NcoI CCATGG 1 cut(s) 91
NdeII GATC 5 cut(s) 73, 203, 583, 1354, 1559
NgoMIV GCCGGC 1 cut(s) 1665
NlaIV GGNNCC 7 cut(s) 270, 381, 555, 942, 1338, 1561, 1698
NmuCI GTSAC 7 cut(s) 733, 1084, 1234, 1301, 1489, 1589, 1655
NspI RCATGY 2 cut(s) 121, 523
PaeR7I CTCGAG 1 cut(s) 278
PaqCI CACCTGC 1 cut(s) 45
PciI ACATGT 1 cut(s) 117
PdiI GCCGGC 1 cut(s) 1667
PfeI GAWTC 4 cut(s) 18, 42, 451, 1675
PflMI CCANNNNNTGG 1 cut(s) 488
PleI GAGTC 3 cut(s) 104, 350, 642
PpsI GAGTC 3 cut(s) 104, 350, 642
PpuMI RGGWCCY 2 cut(s) 269, 1696
PscI ACATGT 1 cut(s) 117
PshBI ATTAAT 1 cut(s) 366
Psp5II RGGWCCY 2 cut(s) 269, 1696
Psp6I CCWGG 3 cut(s) 316, 703, 1305
PspFI CCCAGC 1 cut(s) 13
PspGI CCWGG 3 cut(s) 316, 703, 1305
PspN4I GGNNCC 7 cut(s) 270, 381, 555, 942, 1338, 1561, 1698
PspPI GGNCC 5 cut(s) 269, 379, 820, 941, 1696
PspPPI RGGWCCY 2 cut(s) 269, 1696
PspXI VCTCGAGB 1 cut(s) 278
PstI CTGCAG 1 cut(s) 1623
PsuI RGATCY 2 cut(s) 203, 1559
PvuII CAGCTG 1 cut(s) 1187
RsaI GTAC 4 cut(s) 511, 524, 1076, 1154
RsaNI GTAC 4 cut(s) 510, 523, 1075, 1153
RseI CAYNNNNRTG 1 cut(s) 1101
SaqAI TTAA 2 cut(s) 366, 957
Sau3AI GATC 5 cut(s) 73, 203, 583, 1354, 1559
Sau96I GGNCC 5 cut(s) 269, 379, 820, 941, 1696
SchI GAGTC 3 cut(s) 105, 350, 643
ScrFI CCNGG 4 cut(s) 318, 705, 1307, 1334
SduI GDGCHC 2 cut(s) 499, 1226
SexAI ACCWGGT 1 cut(s) 316
SfcI CTRYAG 2 cut(s) 546, 1619
Sfr274I CTCGAG 1 cut(s) 278
SinI GGWCC 3 cut(s) 269, 941, 1696
SlaI CTCGAG 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 1101
SmlI CTYRAG 4 cut(s) 278, 929, 1033, 1279
SmoI CTYRAG 4 cut(s) 278, 929, 1033, 1279
SsiI CCGC 3 cut(s) 492, 720, 1532
SspMI CTAG 1 cut(s) 1119
StyD4I CCNGG 4 cut(s) 316, 703, 1305, 1332
StyI CCWWGG 2 cut(s) 91, 1156
TaaI ACNGT 5 cut(s) 547, 839, 1489, 1568, 1713
TaqI TCGA 1 cut(s) 279
TatI WGTACW 2 cut(s) 522, 1074
TfiI GAWTC 4 cut(s) 18, 42, 451, 1675
Tru1I TTAA 2 cut(s) 366, 957
Tru9I TTAA 2 cut(s) 366, 957
TscAI CASTG 6 cut(s) 630, 1054, 1492, 1573, 1588, 1716
TseFI GTSAC 7 cut(s) 733, 1084, 1234, 1301, 1489, 1589, 1655
Tsp45I GTSAC 7 cut(s) 733, 1084, 1234, 1301, 1489, 1589, 1655
TspDTI ATGAA 5 cut(s) 63, 276, 339, 1013, 1650
TspRI CASTG 6 cut(s) 630, 1054, 1492, 1573, 1588, 1716
Van91I CCANNNNNTGG 1 cut(s) 488
VpaK11BI GGWCC 3 cut(s) 269, 941, 1696
VspI ATTAAT 1 cut(s) 366
XapI RAATTY 5 cut(s) 385, 1019, 1438, 1519, 1553
XceI RCATGY 2 cut(s) 121, 523
XcmI CCANNNNNNNNNTGG 1 cut(s) 1667
XhoI CTCGAG 1 cut(s) 278
XmiI GTMKAC 1 cut(s) 1382
XspI CTAG 1 cut(s) 1119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.