Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006784

Physical Location & Seq

Genomic Coordinates Forward (+)

19707106 .. 19715845

Gene Structure 8740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1206200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3009 bp

ATGCCTTCTGCAAAAGGAAAGAAGCATTCGAAGACCCAATCGAGGCTATCGAATTCTTCCGACAACTTCTCGTCAAATGGGTCGCTTGATTTCGGAGAAACAGAAGAGGGTTTTGCGAGCTCCATCGAACAAGCTTCGATCAAATACCCATCTCTGATTGCTAAGTCTGCTTTCGTTGCCCGAGTCGCCGACGTTCAGGACGACCCCAAAAGCTGCAAAATTTGGCTCTCAGAGCCATCCATGGTCGCCTCTTCCTTCACTCCTGGCTCCATTGTTTCGTTGTCGCTTCCGAGCTCGAAGAGTAGATATTCAGATGGGTTTCCTCTCTGTTCATTAGCAGATGAATGTGCTAGAACTTTTGGGATTGGTTCTTGTGGGCAGTTGGCTAATGAAGCAGGAAACTACTTTGCTCTTGCTACAATTTTTCCTTCTTCTAAGGTTACGAAGAATGAAGTGCTATTGTCTTCAAATCTTTCAAATACAATTGGTTGTCCTCCATCAGGTAGGGTAATATTCATCCACTCTGTACAAAATCAGTTTGGAGTTGGTCTTCTGGGTAAGACAGGAAAACCACATAGCACCGGAGTTGATTGCCTCTCAGTATACGACTGCAAGGAGTTAGTTTTGGAGATTGTTCCTTCTAATAATAGATTAACCATGAACAATACCTCTGTCAACATTTCCGCTGAAAAATCTTACCATTATTCTGAAAAGGGAATGGCTGCATCTCCTAAGACACCATTGAATCTATCAAAGCTAAGTGTGTCTAGTACTAGTCCAGTAACTTCACCTCGATGTGAGTCAGTAGCAGGTGTAACCATTCCCAATGTGCCATCTGTTAATTCTTTTGATGTTGAAGAGGTTTTAGGGGTTGACAGTACCAAAAGACTTCTGCAGACATGTGCTACTACATGGTTGTATTCTCGCTGTCTACTTTGTGGAAATTTTGTCACCATCCCAATGCTCTCACAACTTTGTTTACTCCGAGTGATTCGTGCTAAAAGTTTGTCAAACTTTGATGCTAAAGATTTGCTAAATGAGGCTTCTAAAGTAGTGGGCTATGAAAATGATGCTTTTCTAGTGAAGCGAGAAACAAAATTATCTTTCCATTTGCCATCAAACCAAGCATCTAAAACTCCACAGAGAAGAAATCTATCCAAATGTAATGATCCTGCCGCTAATACAGGAGATAACATTTCAAGATTGGGGGGTCTTTCTAAAGAATATGCAGTTTTGAAGGACATCATATTTTCCTCCTCTATGGACACTTTGTCAAGTCTTGGTTTACGAACTACAAAGGGAGTGCTTCTTCATGGTCCTCCTGGTACGGGAAAGACTTCTTTGGCTCGATTATGTGCCTGTGATGCTGGCATTAACTTTTTCTCTGTCAATGGACCTGAACTTGTGAGTCAATACTATGGAGAAAGCGAGAAAGCTTTGCGAGAAGTTTTCGAATCAGCTAGCCAAGCTGCACCTTCTGTGGTATTCATTGATGAGCTGGATGCTATCGCACCTGCAAGGAAAGAAGGAGGTGAGGAGCTATCTCAAAGAATGGTTGCTACACTGTTGAATTTGATGGATGGTGTAAGTAGAACAGAAGGTGTACTTGTAATTGCTGCTACCAACAGGCCTGATAGCATTGAGCCTGCACTCAGACGACCTGGAAGACTTGACAGGGAAATTGAAATAGGTGTGCCATCTCCCAATCAACGTTTGGAGATACTTCATTCTCTTATCGGCGAAATGGAGCAATCTCTTTCATATGAGCAAGTTCAACATCTTGCTATTGCTACACATGGTTTCGTCGGTGCTGATCTGGCTGCCCTTTGTAATGAAGCAGCCTTCAATTGTCTTAGACGTTATGTCAAATTGAAATACTCTGATGATTGTTTGCACCAAACATCTATTGCTGATGAAGATTGTTCTAAAGGTCTAAATGTACCTGGTTTCTCAAAATATACGACAGACATAACGATGGATTACTCAGATTCCAGATCTTCATCTGTCTCACATTTGGATTTTTCTTTAGAGACATCCTTGCATTTAAAGGGAACAAATGGAGATGGTGATAAATTTCTGAATGACATTGAAGGAGAATGTGTCTTGAAAGTGACTTTTGAAGATTTTGAAAAGGCCAGGATGAGAGTGAGGCCCAGTGCCATGCGGGAGGTAATACTTGAAGTTCCGAAAGTTAATTGGGAAGATGTTGGTGGTCAAAGGGAGGTAAAAAATCAGTTAATGGAAGCCGTAATATGGCCTCAAAAACACTGGGAAGCATTCAAGCGTATCGGGACTCAGCCCCCGACAGGGGTCCTGATGTTTGGTCCTCCTGGATGCAGCAAAACCCTTATGGCTCGTGCTGTAGCTTCTGAGGCAGGGCTAAATTTCCTTGCTGTGAAGGGTCCAGAACTTTTTAGCAAATGGGTTGGTGAATCTGAGAAGGCTGTGAAATCCCTGTTTGCGAAAGCAAGGGCTAATGCTCCAGCAATCATATTCTTCGATGAAATTGACGGGCTTGCTGCCATTCGTGGGAAGGAAAGTGATGGAGTTTCAGTTTCGGATAGGGTTATGAGTCAGCTGCTTGTTGAATTGGATGGTTTACATGAAAGAGTTAATGTAACTGTCATTGCTGCTACAAATAGGCCGGACAAGATTGATAGTGCCCTTCTGAGGCCAGGACGCTTTGACCGGCTGCTATATGTGGGACCTCCGGATGAGACTGATCGGGAAGAGATATTTCATATCCATCTGCGCAAGATACCATGCAGTTCTGATGTCACAATATCTGAACTTGCTCGTCTTTCAGAAGGCTGTACCGGTGCTGATATATCGTTAATCTGCCGAGAAGCAGCCGTTGCAGCTATGGAGGAGAGCCTTGATGCCTCAGAAGTAAAAATGCAACATTTAAAAACTGCAATTAAACAAGTGAAGCCAACAGAAATTCATCTTTATCAAGAACTATCCGACAAATTTCAAAGACTTGTTCTTTCTAGCACAAAAGAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AAA

Protein Analysis

1003

Amino Acids

108.92

Weight (kDa)

5.95

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_CI111	PF26429	41 - 176	2e-57	CI111 double-psi beta barrel domain
AAA_16	PF13191	431 - 538	3.3e-06	AAA ATPase domain
AAA	PF00004	435 - 564	4.9e-45	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	592 - 629	5.9e-12	AAA+ lid domain
AAA	PF00004	771 - 902	2.1e-41	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	925 - 970	9.2e-13	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56690
fragaria_vesca	FvH4_6g32040 FvH4_6g32040 FvH4_6g32040 FvH4_6g32040 FvH4_6g32040
malus_domestica	MD09G1206200.v1.1
prunus_persica	Prupe.3G062600_v2.0.a1 Prupe.3G062600_v2.0.a1 Prupe.3G062600_v2.0.a1 Prupe.3G062600_v2.0.a1 Prupe.3G062600_v2.0.a1
pyrus_communis	pycom09g12300
rosa_chinensis	RchiOBHm_Chr2g0139701
rosa_laevigata	RLG00000019827
rosa_multiflora	Rmu_co8172878.1_g000001 Rmu_sc0009714.1_g000008
rosa_roxburghii	Rroxscaffold_2G00105270
rosa_rugosa	Rorug02G0359300 Rorug04G0364300 Rorug04G0364400
rosa_samantha	Rh2AG397600 Rh2AG409100 Rh2BG419400 Rh4CG452300
rosa_wichuraiana	Rw2G033460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	800, 1522
Acc16I	TGCGCA	1 cut(s)	2753
Acc36I	ACCTGC	2 cut(s)	800, 1522
AccI	GTMKAC	2 cut(s)	603, 931
AccIII	TCCGGA	1 cut(s)	2710
AciI	CCGC	3 cut(s)	684, 1176, 2164
AclI	AACGTT	1 cut(s)	1711
AclWI	GGATC	1 cut(s)	1163
AcsI	RAATTY	8 cut(s)	52, 219, 943, 1570, 2072, 2383, 2940, 2969
AfaI	GTAC	7 cut(s)	528, 772, 880, 1327, 1605, 1941, 2815
AfiI	CCNNNNNNNGG	9 cut(s)	42, 500, 1328, 2253, 2306, 2307, 2308, 2529, 2670
AflIII	ACRYGT	1 cut(s)	899
AgeI	ACCGGT	1 cut(s)	2816
AhdI	GACNNNNNGTC	2 cut(s)	1270, 1862
AhlI	ACTAGT	1 cut(s)	773
AjnI	CCWGG	7 cut(s)	262, 1321, 1660, 1942, 2135, 2329, 2674
Alw21I	GWGCWC	2 cut(s)	122, 296
Alw26I	GTCTC	3 cut(s)	2011, 2024, 2711
AlwI	GGATC	1 cut(s)	1163
Ama87I	CYCGRG	1 cut(s)	180
Aor13HI	TCCGGA	1 cut(s)	2710
AoxI	GGCC	6 cut(s)	1628, 2133, 2150, 2255, 2642, 2672
ApoI	RAATTY	8 cut(s)	52, 219, 943, 1570, 2072, 2383, 2940, 2969
AsiGI	ACCGGT	1 cut(s)	2816
Asp700I	GAANNNNTTC	1 cut(s)	1336
AspLEI	GCGC	1 cut(s)	2754
AspS9I	GGNCC	7 cut(s)	1316, 1394, 2151, 2311, 2324, 2402, 2705
AsuHPI	GGTGA	5 cut(s)	780, 943, 1544, 2078, 2441
AsuII	TTCGAA	2 cut(s)	29, 1452
AsuNHI	GCTAGC	1 cut(s)	1460
AvaI	CYCGRG	1 cut(s)	180
AvaII	GGWCC	6 cut(s)	1316, 1394, 2311, 2324, 2402, 2705
BaeGI	GKGCMC	1 cut(s)	2665
BanII	GRGCYC	2 cut(s)	122, 296
BauI	CACGAG	1 cut(s)	2355
BbsI	GAAGAC	4 cut(s)	38, 456, 542, 1672
Bbv12I	GWGCWC	2 cut(s)	122, 296
BceAI	ACGGC	2 cut(s)	2231, 2837
BciT130I	CCWGG	7 cut(s)	264, 1323, 1662, 1944, 2137, 2331, 2676
BcoDI	GTCTC	3 cut(s)	2011, 2024, 2711
BcuI	ACTAGT	1 cut(s)	773
BfaI	CTAG	6 cut(s)	351, 768, 774, 1079, 1461, 2991
BfmI	CTRYAG	2 cut(s)	893, 2361
BfuAI	ACCTGC	2 cut(s)	800, 1522
BglII	AGATCT	1 cut(s)	1994
BmcAI	AGTACT	1 cut(s)	772
Bme1390I	CCNGG	7 cut(s)	264, 1323, 1662, 1944, 2137, 2331, 2676
Bme18I	GGWCC	6 cut(s)	1316, 1394, 2311, 2324, 2402, 2705
BmeRI	GACNNNNNGTC	2 cut(s)	1270, 1862
BmeT110I	CYCGRG	1 cut(s)	180
BmgT120I	GGNCC	7 cut(s)	1316, 1394, 2151, 2311, 2324, 2402, 2705
BmiI	GGNNCC	4 cut(s)	268, 2312, 2403, 2706
BmrFI	CCNGG	7 cut(s)	264, 1323, 1662, 1944, 2137, 2331, 2676
BmrI	ACTGGG	2 cut(s)	2148, 2278
BmsI	GCATC	8 cut(s)	734, 1009, 1060, 1136, 1354, 1492, 2324, 2869
BmtI	GCTAGC	1 cut(s)	1464
BmuI	ACTGGG	2 cut(s)	2148, 2278
BoxI	GACNNNNGTC	1 cut(s)	2309
BpiI	GAAGAC	4 cut(s)	38, 456, 542, 1672
BpmI	CTGGAG	1 cut(s)	2466
Bpu14I	TTCGAA	2 cut(s)	29, 1452
BsaBI	GATNNNNATC	1 cut(s)	1999
BsaJI	CCNNGG	1 cut(s)	240
BsaWI	WCCGGW	3 cut(s)	581, 2710, 2816
BsaXI	ACNNNNNCTCC	4 cut(s)	2085, 2115, 2538, 2568
Bsc4I	CCNNNNNNNGG	9 cut(s)	42, 500, 1328, 2253, 2306, 2307, 2308, 2529, 2670
Bse118I	RCCGGY	2 cut(s)	2688, 2816
Bse1I	ACTGG	3 cut(s)	779, 2154, 2273
Bse3DI	GCAATG	1 cut(s)	2625
Bse8I	GATNNNNATC	1 cut(s)	1999
BseAI	TCCGGA	1 cut(s)	2710
BseBI	CCWGG	7 cut(s)	264, 1323, 1662, 1944, 2137, 2331, 2676
BseDI	CCNNGG	1 cut(s)	240
BseJI	GATNNNNATC	1 cut(s)	1999
BseLI	CCNNNNNNNGG	9 cut(s)	42, 500, 1328, 2253, 2306, 2307, 2308, 2529, 2670
BseMI	GCAATG	1 cut(s)	2625
BseMII	CTCAG	9 cut(s)	243, 612, 1666, 1998, 2309, 2361, 2427, 2660, 2898
BseNI	ACTGG	3 cut(s)	779, 2154, 2273
BseRI	GAGGAG	3 cut(s)	1246, 1550, 2882
BseSI	GKGCMC	1 cut(s)	2665
BsgI	GTGCAG	2 cut(s)	1455, 1632
BshFI	GGCC	6 cut(s)	1630, 2135, 2152, 2257, 2644, 2674
BshTI	ACCGGT	1 cut(s)	2816
BsiHKAI	GWGCWC	2 cut(s)	122, 296
BsiHKCI	CYCGRG	1 cut(s)	180
BsiSI	CCGG	5 cut(s)	582, 2645, 2689, 2711, 2817
BslFI	GGGAC	2 cut(s)	2305, 2718
BslI	CCNNNNNNNGG	9 cut(s)	42, 500, 1328, 2253, 2306, 2307, 2308, 2529, 2670
BsmAI	GTCTC	3 cut(s)	2011, 2024, 2711
BsmFI	GGGAC	2 cut(s)	2305, 2718
BsmI	GAATGC	2 cut(s)	25, 2276
BsnI	GGCC	6 cut(s)	1630, 2135, 2152, 2257, 2644, 2674
BsoBI	CYCGRG	1 cut(s)	180
Bsp119I	TTCGAA	2 cut(s)	29, 1452
Bsp1286I	GDGCHC	3 cut(s)	122, 296, 2665
Bsp13I	TCCGGA	1 cut(s)	2710
Bsp1407I	TGTACA	1 cut(s)	526
Bsp143I	GATC	5 cut(s)	138, 1168, 1813, 1994, 2722
Bsp19I	CCATGG	1 cut(s)	240
BspACI	CCGC	3 cut(s)	684, 1176, 2164
BspANI	GGCC	6 cut(s)	1630, 2135, 2152, 2257, 2644, 2674
BspCNI	CTCAG	9 cut(s)	242, 611, 1665, 1997, 2308, 2362, 2428, 2661, 2897
BspEI	TCCGGA	1 cut(s)	2710
BspLI	GGNNCC	4 cut(s)	268, 2312, 2403, 2706
BspMAI	CTGCAG	1 cut(s)	897
BspMI	ACCTGC	2 cut(s)	800, 1522
BspOI	GCTAGC	1 cut(s)	1464
BspPI	GGATC	1 cut(s)	1163
BspT104I	TTCGAA	2 cut(s)	29, 1452
BsrDI	GCAATG	1 cut(s)	2625
BsrFI	RCCGGY	2 cut(s)	2688, 2816
BsrGI	TGTACA	1 cut(s)	526
BsrI	ACTGG	3 cut(s)	779, 2154, 2273
BssAI	RCCGGY	2 cut(s)	2688, 2816
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	5 cut(s)	138, 1168, 1813, 1994, 2722
BssNAI	GTATAC	1 cut(s)	604
BssSI	CACGAG	1 cut(s)	2355
BssT1I	CCWWGG	1 cut(s)	240
Bst1107I	GTATAC	1 cut(s)	604
Bst2BI	CACGAG	1 cut(s)	2355
Bst2UI	CCWGG	7 cut(s)	264, 1323, 1662, 1944, 2137, 2331, 2676
Bst4CI	ACNGT	3 cut(s)	878, 1566, 2623
Bst6I	CTCTTC	5 cut(s)	99, 256, 293, 852, 2724
BstAPI	GCANNNNNTGC	1 cut(s)	2855
BstAUI	TGTACA	1 cut(s)	526
BstBI	TTCGAA	2 cut(s)	29, 1452
BstC8I	GCNNGC	5 cut(s)	118, 1369, 1462, 1647, 2517
BstDSI	CCRYGG	1 cut(s)	240
BstENI	CCTNNNNNAGG	1 cut(s)	498
BstHHI	GCGC	1 cut(s)	2754
BstKTI	GATC	5 cut(s)	141, 1171, 1816, 1997, 2725
BstMAI	GTCTC	3 cut(s)	2011, 2024, 2711
BstMBI	GATC	5 cut(s)	138, 1168, 1813, 1994, 2722
BstNI	CCWGG	7 cut(s)	264, 1323, 1662, 1944, 2137, 2331, 2676
BstNSI	RCATGY	1 cut(s)	903
BstPAI	GACNNNNGTC	1 cut(s)	2309
BstSCI	CCNGG	7 cut(s)	262, 1321, 1660, 1942, 2135, 2329, 2674
BstSFI	CTRYAG	2 cut(s)	893, 2361
BstSLI	GKGCMC	1 cut(s)	2665
BstV2I	GAAGAC	4 cut(s)	38, 456, 542, 1672
BstX2I	RGATCY	1 cut(s)	1994
BstYI	RGATCY	1 cut(s)	1994
BstZ17I	GTATAC	1 cut(s)	604
BsuRI	GGCC	6 cut(s)	1630, 2135, 2152, 2257, 2644, 2674
BtgI	CCRYGG	1 cut(s)	240
BtsIMutI	CAGTG	3 cut(s)	1562, 2161, 2266
BveI	ACCTGC	2 cut(s)	800, 1522
Cac8I	GCNNGC	5 cut(s)	118, 1369, 1462, 1647, 2517
CfoI	GCGC	1 cut(s)	2754
Cfr10I	RCCGGY	2 cut(s)	2688, 2816
Cfr13I	GGNCC	7 cut(s)	1316, 1394, 2151, 2311, 2324, 2402, 2705
CseI	GACGC	1 cut(s)	2688
CsiI	ACCWGGT	1 cut(s)	1942
Csp6I	GTAC	7 cut(s)	527, 771, 879, 1326, 1604, 1940, 2814
CspAI	ACCGGT	1 cut(s)	2816
CviAII	CATG	9 cut(s)	241, 658, 900, 912, 1313, 1796, 2161, 2603, 2763
CviQI	GTAC	7 cut(s)	527, 771, 879, 1326, 1604, 1940, 2814
DpnI	GATC	5 cut(s)	140, 1170, 1815, 1996, 2724
DpnII	GATC	5 cut(s)	138, 1168, 1813, 1994, 2722
DraI	TTTAAA	2 cut(s)	2046, 2907
DriI	GACNNNNNGTC	2 cut(s)	1270, 1862
Eam1104I	CTCTTC	5 cut(s)	99, 256, 293, 852, 2724
Eam1105I	GACNNNNNGTC	2 cut(s)	1270, 1862
EarI	CTCTTC	5 cut(s)	99, 256, 293, 852, 2724
Ecl136II	GAGCTC	2 cut(s)	120, 294
Eco130I	CCWWGG	1 cut(s)	240
Eco147I	AGGCCT	1 cut(s)	1630
Eco24I	GRGCYC	2 cut(s)	122, 296
Eco47I	GGWCC	6 cut(s)	1316, 1394, 2311, 2324, 2402, 2705
Eco53kI	GAGCTC	2 cut(s)	120, 294
Eco88I	CYCGRG	1 cut(s)	180
EcoICRI	GAGCTC	2 cut(s)	120, 294
EcoNI	CCTNNNNNAGG	1 cut(s)	498
EcoO109I	RGGNCCY	2 cut(s)	2311, 2705
EcoRI	GAATTC	1 cut(s)	52
EcoRII	CCWGG	7 cut(s)	262, 1321, 1660, 1942, 2135, 2329, 2674
EcoT14I	CCWWGG	1 cut(s)	240
EcoT38I	GRGCYC	2 cut(s)	122, 296
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	9 cut(s)	244, 661, 903, 915, 1316, 1799, 2164, 2606, 2766
FalI	AAGNNNNNCTT	2 cut(s)	1590, 1622
FaqI	GGGAC	2 cut(s)	2305, 2718
FatI	CATG	9 cut(s)	240, 657, 899, 911, 1312, 1795, 2160, 2602, 2762
FauI	CCCGC	1 cut(s)	2157
FauNDI	CATATG	1 cut(s)	1762
FblI	GTMKAC	2 cut(s)	603, 931
FriOI	GRGCYC	2 cut(s)	122, 296
FspBI	CTAG	6 cut(s)	351, 768, 774, 1079, 1461, 2991
FspI	TGCGCA	1 cut(s)	2753
GlaI	GCGC	1 cut(s)	2753
GsuI	CTGGAG	1 cut(s)	2466
HaeIII	GGCC	6 cut(s)	1630, 2135, 2152, 2257, 2644, 2674
HapII	CCGG	5 cut(s)	582, 2645, 2689, 2711, 2817
HgaI	GACGC	1 cut(s)	2688
HhaI	GCGC	1 cut(s)	2754
Hin1II	CATG	9 cut(s)	244, 661, 903, 915, 1316, 1799, 2164, 2606, 2766
Hin6I	GCGC	1 cut(s)	2752
HinP1I	GCGC	1 cut(s)	2752
HincII	GTYRAC	2 cut(s)	676, 874
HindII	GTYRAC	2 cut(s)	676, 874
HindIII	AAGCTT	2 cut(s)	132, 1434
HpaII	CCGG	5 cut(s)	582, 2645, 2689, 2711, 2817
HphI	GGTGA	5 cut(s)	780, 943, 1544, 2078, 2441
Hpy166II	GTNNAC	8 cut(s)	604, 676, 874, 932, 980, 1286, 1604, 2600
Hpy8I	GTNNAC	8 cut(s)	604, 676, 874, 932, 980, 1286, 1604, 2600
Hpy99I	CGWCG	2 cut(s)	194, 1808
HpyCH4III	ACNGT	3 cut(s)	878, 1566, 2623
HpyCH4IV	ACGT	3 cut(s)	192, 1711, 1858
HpySE526I	ACGT	3 cut(s)	192, 1711, 1858
Hsp92II	CATG	9 cut(s)	244, 661, 903, 915, 1316, 1799, 2164, 2606, 2766
HspAI	GCGC	1 cut(s)	2752
Kpn2I	TCCGGA	1 cut(s)	2710
Kzo9I	GATC	5 cut(s)	138, 1168, 1813, 1994, 2722
LmnI	GCTCC	5 cut(s)	125, 272, 1537, 1747, 2485
LweI	GCATC	8 cut(s)	734, 1009, 1060, 1136, 1354, 1492, 2324, 2869
MabI	ACCWGGT	1 cut(s)	1942
MaeI	CTAG	6 cut(s)	351, 768, 774, 1079, 1461, 2991
MaeII	ACGT	3 cut(s)	192, 1711, 1858
MaeIII	GTNAC	7 cut(s)	439, 781, 814, 949, 2110, 2617, 2776
MalI	GATC	5 cut(s)	140, 1170, 1815, 1996, 2724
MboI	GATC	5 cut(s)	138, 1168, 1813, 1994, 2722
MfeI	CAATTG	2 cut(s)	483, 1846
MflI	RGATCY	1 cut(s)	1994
MhlI	GDGCHC	3 cut(s)	122, 296, 2665
MlyI	GAGTC	5 cut(s)	192, 809, 1417, 2287, 2581
MmeI	TCCRAC	2 cut(s)	84, 2988
MroI	TCCGGA	1 cut(s)	2710
MroXI	GAANNNNTTC	1 cut(s)	1336
MslI	CAYNNNNRTG	3 cut(s)	793, 959, 1973
MspA1I	CMGCKG	2 cut(s)	686, 2578
MspI	CCGG	5 cut(s)	582, 2645, 2689, 2711, 2817
MspR9I	CCNGG	7 cut(s)	264, 1323, 1662, 1944, 2137, 2331, 2676
MunI	CAATTG	2 cut(s)	483, 1846
Mva1269I	GAATGC	2 cut(s)	25, 2276
MvaI	CCWGG	7 cut(s)	264, 1323, 1662, 1944, 2137, 2331, 2676
NcoI	CCATGG	1 cut(s)	240
NdeI	CATATG	1 cut(s)	1762
NdeII	GATC	5 cut(s)	138, 1168, 1813, 1994, 2722
NheI	GCTAGC	1 cut(s)	1460
NlaIII	CATG	9 cut(s)	244, 661, 903, 915, 1316, 1799, 2164, 2606, 2766
NlaIV	GGNNCC	4 cut(s)	268, 2312, 2403, 2706
NmeAIII	GCCGAG	1 cut(s)	2867
NmuCI	GTSAC	3 cut(s)	949, 2110, 2776
NsbI	TGCGCA	1 cut(s)	2753
NspI	RCATGY	1 cut(s)	903
NspV	TTCGAA	2 cut(s)	29, 1452
PaqCI	CACCTGC	2 cut(s)	800, 1522
PceI	AGGCCT	1 cut(s)	1630
PciI	ACATGT	1 cut(s)	899
PcsI	WCGNNNNNNNCGW	2 cut(s)	47, 198
PctI	GAATGC	2 cut(s)	25, 2276
PdmI	GAANNNNTTC	1 cut(s)	1336
PfeI	GAWTC	5 cut(s)	745, 991, 1454, 1988, 2432
PfoI	TCCNGGA	1 cut(s)	2329
PinAI	ACCGGT	1 cut(s)	2816
PleI	GAGTC	5 cut(s)	191, 808, 1416, 2287, 2580
PpsI	GAGTC	5 cut(s)	191, 808, 1416, 2287, 2580
PpuMI	RGGWCCY	2 cut(s)	2311, 2705
PscI	ACATGT	1 cut(s)	899
PshAI	GACNNNNGTC	1 cut(s)	2309
Psp124BI	GAGCTC	2 cut(s)	122, 296
Psp1406I	AACGTT	1 cut(s)	1711
Psp5II	RGGWCCY	2 cut(s)	2311, 2705
Psp6I	CCWGG	7 cut(s)	262, 1321, 1660, 1942, 2135, 2329, 2674
PspGI	CCWGG	7 cut(s)	262, 1321, 1660, 1942, 2135, 2329, 2674
PspN4I	GGNNCC	4 cut(s)	268, 2312, 2403, 2706
PspPI	GGNCC	7 cut(s)	1316, 1394, 2151, 2311, 2324, 2402, 2705
PspPPI	RGGWCCY	2 cut(s)	2311, 2705
PstI	CTGCAG	1 cut(s)	897
PsuI	RGATCY	1 cut(s)	1994
PvuII	CAGCTG	1 cut(s)	2578
RsaI	GTAC	7 cut(s)	528, 772, 880, 1327, 1605, 1941, 2815
RsaNI	GTAC	7 cut(s)	527, 771, 879, 1326, 1604, 1940, 2814
RseI	CAYNNNNRTG	3 cut(s)	793, 959, 1973
SacI	GAGCTC	2 cut(s)	122, 296
Sau3AI	GATC	5 cut(s)	138, 1168, 1813, 1994, 2722
Sau96I	GGNCC	7 cut(s)	1316, 1394, 2151, 2311, 2324, 2402, 2705
ScaI	AGTACT	1 cut(s)	772
SchI	GAGTC	5 cut(s)	192, 809, 1417, 2287, 2581
ScrFI	CCNGG	7 cut(s)	264, 1323, 1662, 1944, 2137, 2331, 2676
SduI	GDGCHC	3 cut(s)	122, 296, 2665
SexAI	ACCWGGT	1 cut(s)	1942
SfaNI	GCATC	8 cut(s)	734, 1009, 1060, 1136, 1354, 1492, 2324, 2869
SfcI	CTRYAG	2 cut(s)	893, 2361
SfuI	TTCGAA	2 cut(s)	29, 1452
SinI	GGWCC	6 cut(s)	1316, 1394, 2311, 2324, 2402, 2705
SmiMI	CAYNNNNRTG	3 cut(s)	793, 959, 1973
SpeI	ACTAGT	1 cut(s)	773
SseBI	AGGCCT	1 cut(s)	1630
SsiI	CCGC	3 cut(s)	684, 1176, 2164
SspI	AATATT	1 cut(s)	513
SspMI	CTAG	6 cut(s)	351, 768, 774, 1079, 1461, 2991
SstI	GAGCTC	2 cut(s)	122, 296
StuI	AGGCCT	1 cut(s)	1630
StyD4I	CCNGG	7 cut(s)	262, 1321, 1660, 1942, 2135, 2329, 2674
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	3 cut(s)	878, 1566, 2623
TaiI	ACGT	3 cut(s)	195, 1714, 1861
TatI	WGTACW	3 cut(s)	526, 770, 1603
TauI	GCSGC	1 cut(s)	1178
TfiI	GAWTC	5 cut(s)	745, 991, 1454, 1988, 2432
TscAI	CASTG	3 cut(s)	1569, 2161, 2273
TseFI	GTSAC	3 cut(s)	949, 2110, 2776
Tsp45I	GTSAC	3 cut(s)	949, 2110, 2776
TspRI	CASTG	3 cut(s)	1569, 2161, 2273
VpaK11BI	GGWCC	6 cut(s)	1316, 1394, 2311, 2324, 2402, 2705
XagI	CCTNNNNNAGG	1 cut(s)	498
XapI	RAATTY	8 cut(s)	52, 219, 943, 1570, 2072, 2383, 2940, 2969
XceI	RCATGY	1 cut(s)	903
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1711
XmiI	GTMKAC	2 cut(s)	603, 931
XmnI	GAANNNNTTC	1 cut(s)	1336
XspI	CTAG	6 cut(s)	351, 768, 774, 1079, 1461, 2991
ZrmI	AGTACT	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.