Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009714.1

Orthogroup ID

OG0006784

Physical Location & Seq

Genomic Coordinates Reverse (-)

33549 .. 42791

Gene Structure 9243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009714.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3378 bp

atggatggcccagacggttgtgccagagggaggaatgaacggttgcgagagcatgaggaattgttgggtcggacgacaaaagaagaggatatagcccatctttacaagggccctgaaaaaggagacaaccagtgcgacgtgcttgccaagaagaagaagacccgggtggagaaaagacgggctgcgatggcactgtggggaaagggcgagacgcacctccacgacggcgttggtagtggcgtcagccggggaagctgcgccgcaaaaatgagggtttatgtacagggttttatttggacaaaagtccggcgcctcggaattctccgcatcctttctccgagctctgttcttgaacccggctcctggatgccttcaaagggcaagaagaactcaaaggcccaatcgaggctgtccaattctgacagctttgcctcttctgggtcgatcgattttgaacccaatgaagtgggttttgctacctctcttgaacaagcttccagcagatacccatctctgattggaaaatctgctttcattggccaagtcaccgatgtcgatgacacctccaaaagctgtaaaatttggctttcagagccttccatggttgccaattccttcactcctggctccattgtatcggtgtcactaccttgtttgagaagtagagtttcagagacctttcctctcagctcattagcagatgaatgtgctagatgcttcggggttgagtcttgcaaaggtttggctaatgaaccagggaactactttgctattgcaactatatttccttcttctaaggtttcaaagaacggggtacgactgtcttcaaatctttcaaagaccatgggttgtcctgcatcaggcaggatcatatttatccactccgtacaaaatacagtccgagctggtcttttaagtgatacagaaaaaccatctagtaccaaagattgcctctctgtgtccgactgtaaggagttaattttggagctactccattccaacagtagattaactatgaacactacctccacaaacacttctgctgaaaaatcgtttaaccggcctgaaaatggaatgcctgcatcccctaagacaccattgaatccatcaaagcttagcttttctaatagaagtccattagcttcacctcgtcgtgaggagtcagcatcaagtgtaatcactccagatgaaaaatttgttgaaccttttgatgttcaagaggttttaggggatgacacttcaaaaagacttcttcagacgtgtgctactacatggttgtattctcgttgtttacttcgtggaaatctagtgactattccggtgctttcacagcattgtttacttcgagtcattggtgctaagagcttatcagatgataaagctaataatgactcgcttcatgagtcctctgagttagtggacaaagtaaatgatgcttttttagtgaagcgggaaacaaaagtatgctttcatttgccatcaaacctggaatctaaaagaagagatctttctatggtgcaatgcaaggatgctatagctaatacaggagatgacccatcaagactgggtggtctttcaaaagaatatgcagttttgaaagacatcataatatcatcatctatggacaccttgtcacgtcttggtttacgacctacaaagggagtgcttcttcatggtccgcctggtacgggaaagacttctttggctcggttatgtgcccgtgatgctggtgtcaactttttctctgtcaatggacctgaagttgtgagtcagtactatggaaaaagtgagcaagccttacgtgaagtttttgattcagctagccaagacgcaccttctgtggtattcattgatgagttggatgcaattgcacctgcaaggaaagagggaggtgaagagctatctctgagaatggttgctacactattgaatttgatggatgggattagtacaactgaaagagtacttgtaattgctgctaccaacaggcctgatagtattgagcctgcactcagacgacctggaagacttgacagggaaattgaaataggagtgccatctcccaagcaacggcttgagattctacatgttcttgtcggtgaaatggagcactgtctttcagatgtgcaagtccaacaacttgctaatgctacacatggtttcgtaggctctgatctagctgccctttgcaacgaggcagccttcagttctcttaggcgttatgtcaattctagatatcctcatgattatttgcatagaacatctagtacttctgaagattgttccaacagtctaatggtacctgattgcttagaagatacaacagacatgtcaagggattactcagatactgcatcttcatctatcacacatatcgcgttttcttcagagaattgtttgtctgtgcatttgaaggggacaaatcaagatgacgatattgaagaagaattaaaagtgacttttaaagattttgaaagtgccaggataaaagtgaggcccagtgctatgcgagaggtaatcgttgaggtcccgaaggttaattgggaagatgttgggggtcagacggaggtgaagaatcaattgatagaagctgtaatgtggccccaaaagcaccaggacgaattcaagcgtataggaatttctcccccaacaggggtcctcatgtttggtcctcctggttgcagcaaaaccctcatggctcgtgcagtagcttctgaggcacggctgaatttcctttctgtgaagggtccagaactttatagcaaatgggttggtgaatctgagaaggctgtgagatcagtgtttgcaaaggcaagggctaatgccccagcaatcatattctttgatgaaattgacggtcttgctgccattcgtgggaaggaaaatgatggagtgtctgtttcagatagggtcataagtcaacttcttgtcgaaatggatggtttgcaagaaagagttgatgtcactgttattgcggctacaaatcggcccgacaagattgatagtgcgcttctaagaccagggcgctttgatcgcttgctatatgtgggacctccagatgagactgatcgtgaagagatatttcgtatccatttgaacaatatgaaatgcagctatctcaacagacgtgatcttgctcgtcaggccgaaggctatacaggtgctgatattagattaatctgtcgggaagcaggtcttgcagctattgaggagagcttatgccgtaaggagagccttgatgccttagaaattaaaatgcaacatttagagactgcgattagacaagtgaagccaacaaaaactcagttttatcaagagctatctggaaagtttcaaagactcgttctttctaacataaacccggggaattcatcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AAA

Protein Analysis

1125

Amino Acids

123.54

Weight (kDa)

6.62

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56690
fragaria_vesca	FvH4_6g32040 FvH4_6g32040 FvH4_6g32040 FvH4_6g32040 FvH4_6g32040
malus_domestica	MD09G1206200.v1.1
prunus_persica	Prupe.3G062600_v2.0.a1 Prupe.3G062600_v2.0.a1 Prupe.3G062600_v2.0.a1 Prupe.3G062600_v2.0.a1 Prupe.3G062600_v2.0.a1
pyrus_communis	pycom09g12300
rosa_chinensis	RchiOBHm_Chr2g0139701
rosa_laevigata	RLG00000019827
rosa_multiflora	Rmu_co8172878.1_g000001 Rmu_sc0009714.1_g000008
rosa_roxburghii	Rroxscaffold_2G00105270
rosa_rugosa	Rorug02G0359300 Rorug04G0364300 Rorug04G0364400
rosa_samantha	Rh2AG397600 Rh2AG409100 Rh2BG419400 Rh4CG452300
rosa_wichuraiana	Rw2G033460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1882
AasI	GACNNNNNNGTC	1 cut(s)	1569
Acc36I	ACCTGC	2 cut(s)	1882, 3182
Acc65I	GGTACC	1 cut(s)	2299
AccB1I	GGYRCC	2 cut(s)	309, 2299
AccII	CGCG	1 cut(s)	2378
AciI	CCGC	5 cut(s)	261, 325, 1450, 1679, 2975
AclWI	GGATC	1 cut(s)	875
AcoI	YGGCCR	1 cut(s)	538
AcsI	RAATTY	8 cut(s)	318, 579, 1193, 1930, 2621, 2637, 2728, 3367
AcuI	CTGAAG	5 cut(s)	1238, 1779, 2188, 2295, 2370
AcyI	GRCGYC	2 cut(s)	240, 310
AflIII	ACRYGT	3 cut(s)	1259, 2086, 2328
AhdI	GACNNNNNGTC	1 cut(s)	1630
AjiI	CACGTC	4 cut(s)	139, 1260, 1637, 3128
AloI	GAACNNNNNNTCC	2 cut(s)	1010, 1042
Alw21I	GWGCWC	2 cut(s)	344, 2112
Alw26I	GTCTC	5 cut(s)	117, 203, 668, 3056, 3263
AlwI	GGATC	1 cut(s)	875
AlwNI	CAGNNNCTG	2 cut(s)	2351, 3164
Ama87I	CYCGRG	2 cut(s)	162, 3361
ApaI	GGGCCC	1 cut(s)	113
ApeKI	GCWGC	9 cut(s)	182, 255, 1976, 2180, 2198, 2682, 2864, 3111, 3200
ApoI	RAATTY	8 cut(s)	318, 579, 1193, 1930, 2621, 2637, 2728, 3367
AseI	ATTAAT	1 cut(s)	3176
Asp700I	GAANNNNTTC	1 cut(s)	1696
Asp718I	GGTACC	1 cut(s)	2299
AspLEI	GCGC	4 cut(s)	260, 312, 3010, 3027
AsuC2I	CCSGG	6 cut(s)	163, 164, 248, 357, 3362, 3363
AsuHPI	GGTGA	6 cut(s)	538, 1137, 1904, 2111, 2581, 2786
AsuNHI	GCTAGC	1 cut(s)	1820
AvaI	CYCGRG	2 cut(s)	162, 3361
AvaII	GGWCC	7 cut(s)	1676, 1754, 2527, 2656, 2669, 2747, 3050
BaeGI	GKGCMC	2 cut(s)	113, 1720
BaeI	ACNNNNGTAYC	2 cut(s)	806, 839
BalI	TGGCCA	1 cut(s)	540
BanI	GGYRCC	2 cut(s)	309, 2299
BanII	GRGCYC	2 cut(s)	113, 344
BauI	CACGAG	1 cut(s)	2700
BbsI	GAAGAC	3 cut(s)	164, 816, 2032
Bbv12I	GWGCWC	2 cut(s)	344, 2112
BbvI	GCAGC	9 cut(s)	169, 242, 1963, 2167, 2210, 2694, 2851, 3123, 3212
BceAI	ACGGC	4 cut(s)	241, 2087, 2738, 3207
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BciVI	GTATCC	1 cut(s)	3098
BcnI	CCSGG	6 cut(s)	163, 164, 248, 357, 3362, 3363
BcoDI	GTCTC	5 cut(s)	117, 203, 668, 3056, 3263
BfaI	CTAG	7 cut(s)	711, 936, 1307, 1821, 2177, 2232, 2265
BfmI	CTRYAG	1 cut(s)	1533
BfoI	RGCGCY	2 cut(s)	313, 3028
BfuAI	ACCTGC	2 cut(s)	1882, 3182
BfuI	GTATCC	1 cut(s)	3098
BglII	AGATCT	1 cut(s)	1504
BlpI	GCTNAGC	1 cut(s)	1115
BmcAI	AGTACT	3 cut(s)	1775, 1965, 2269
Bme18I	GGWCC	7 cut(s)	1676, 1754, 2527, 2656, 2669, 2747, 3050
BmeRI	GACNNNNNGTC	1 cut(s)	1630
BmeT110I	CYCGRG	2 cut(s)	162, 3361
BmgBI	CACGTC	4 cut(s)	139, 1260, 1637, 3128
BmrI	ACTGGG	2 cut(s)	1574, 2493
BmtI	GCTAGC	1 cut(s)	1824
BmuI	ACTGGG	2 cut(s)	1574, 2493
BoxI	GACNNNNGTC	1 cut(s)	302
BpiI	GAAGAC	3 cut(s)	164, 816, 2032
BpmI	CTGGAG	2 cut(s)	1167, 3039
Bpu1102I	GCTNAGC	1 cut(s)	1115
BpuEI	CTTGAG	1 cut(s)	2096
BpuMI	CCSGG	6 cut(s)	163, 164, 248, 357, 3362, 3363
Bsa29I	ATCGAT	1 cut(s)	447
BsaAI	YACGTR	1 cut(s)	1802
BsaBI	GATNNNNATC	1 cut(s)	508
BsaHI	GRCGYC	2 cut(s)	240, 310
BsaI	GGTCTC	1 cut(s)	668
BsaJI	CCNNGG	9 cut(s)	162, 247, 313, 600, 755, 843, 3020, 3361, 3362
BsaWI	WCCGGW	1 cut(s)	1318
BsaXI	ACNNNNNCTCC	4 cut(s)	1010, 1040, 2883, 2913
Bse118I	RCCGGY	1 cut(s)	1059
Bse1I	ACTGG	3 cut(s)	130, 1569, 2499
Bse3DI	GCAATG	1 cut(s)	1526
Bse8I	GATNNNNATC	1 cut(s)	508
BseCI	ATCGAT	1 cut(s)	447
BseDI	CCNNGG	9 cut(s)	162, 247, 313, 600, 755, 843, 3020, 3361, 3362
BseGI	GGATG	9 cut(s)	10, 327, 372, 1082, 1237, 1534, 1867, 1945, 2944
BseJI	GATNNNNATC	1 cut(s)	508
BseMI	GCAATG	1 cut(s)	1526
BseMII	CTCAG	8 cut(s)	700, 1401, 1898, 2026, 2358, 2706, 2772, 3317
BseNI	ACTGG	3 cut(s)	130, 1569, 2499
BseRI	GAGGAG	2 cut(s)	1172, 3224
BseSI	GKGCMC	2 cut(s)	113, 1720
BseXI	GCAGC	9 cut(s)	169, 242, 1963, 2167, 2210, 2694, 2851, 3123, 3212
BseYI	CCCAGC	1 cut(s)	2827
BsgI	GTGCAG	2 cut(s)	1992, 2724
Bsh1236I	CGCG	1 cut(s)	2378
Bsh1285I	CGRYCG	1 cut(s)	447
BshNI	GGYRCC	2 cut(s)	309, 2299
BshVI	ATCGAT	1 cut(s)	447
BsiEI	CGRYCG	1 cut(s)	447
BsiHKAI	GWGCWC	2 cut(s)	344, 2112
BsiHKCI	CYCGRG	2 cut(s)	162, 3361
BsiSI	CCGG	7 cut(s)	163, 247, 307, 357, 1060, 1319, 3362
BslFI	GGGAC	3 cut(s)	2431, 2513, 3063
BsmAI	GTCTC	5 cut(s)	117, 203, 668, 3056, 3263
BsmBI	CGTCTC	1 cut(s)	203
BsmFI	GGGAC	3 cut(s)	2431, 2513, 3063
BsmI	GAATGC	1 cut(s)	1080
Bso31I	GGTCTC	1 cut(s)	668
BsoBI	CYCGRG	2 cut(s)	162, 3361
Bsp120I	GGGCCC	1 cut(s)	109
Bsp1286I	GDGCHC	4 cut(s)	113, 344, 1720, 2112
Bsp1407I	TGTACA	1 cut(s)	280
Bsp143I	GATC	8 cut(s)	444, 867, 1504, 2173, 2795, 3031, 3067, 3130
Bsp1720I	GCTNAGC	1 cut(s)	1115
Bsp19I	CCATGG	2 cut(s)	600, 843
BspACI	CCGC	5 cut(s)	261, 325, 1450, 1679, 2975
BspCNI	CTCAG	8 cut(s)	699, 1402, 1899, 2025, 2357, 2707, 2773, 3316
BspDI	ATCGAT	1 cut(s)	447
BspFNI	CGCG	1 cut(s)	2378
BspHI	TCATGA	2 cut(s)	1399, 2242
BspMI	ACCTGC	2 cut(s)	1882, 3182
BspOI	GCTAGC	1 cut(s)	1824
BspPI	GGATC	1 cut(s)	875
BspQI	GCTCTTC	1 cut(s)	1890
BspT107I	GGYRCC	2 cut(s)	309, 2299
BspTNI	GGTCTC	1 cut(s)	668
BsrDI	GCAATG	1 cut(s)	1526
BsrFI	RCCGGY	1 cut(s)	1059
BsrGI	TGTACA	1 cut(s)	280
BsrI	ACTGG	3 cut(s)	130, 1569, 2499
BssAI	RCCGGY	1 cut(s)	1059
BssECI	CCNNGG	9 cut(s)	162, 247, 313, 600, 755, 843, 3020, 3361, 3362
BssMI	GATC	8 cut(s)	444, 867, 1504, 2173, 2795, 3031, 3067, 3130
BssNI	GRCGYC	2 cut(s)	240, 310
BssSI	CACGAG	1 cut(s)	2700
BssT1I	CCWWGG	2 cut(s)	600, 843
Bst2BI	CACGAG	1 cut(s)	2700
Bst6I	CTCTTC	5 cut(s)	78, 439, 1495, 1890, 3069
BstACI	GRCGYC	2 cut(s)	240, 310
BstAPI	GCANNNNNTGC	1 cut(s)	3197
BstAUI	TGTACA	1 cut(s)	280
BstBAI	YACGTR	1 cut(s)	1802
BstC8I	GCNNGC	6 cut(s)	144, 1080, 1794, 1822, 2007, 3038
BstDSI	CCRYGG	2 cut(s)	600, 843
BstENI	CCTNNNNNAGG	2 cut(s)	117, 858
BstF5I	GGATG	9 cut(s)	10, 327, 372, 1082, 1237, 1534, 1867, 1945, 2944
BstFNI	CGCG	1 cut(s)	2378
BstH2I	RGCGCY	2 cut(s)	313, 3028
BstHHI	GCGC	4 cut(s)	260, 312, 3010, 3027
BstKTI	GATC	8 cut(s)	447, 870, 1507, 2176, 2798, 3034, 3070, 3133
BstMAI	GTCTC	5 cut(s)	117, 203, 668, 3056, 3263
BstMBI	GATC	8 cut(s)	444, 867, 1504, 2173, 2795, 3031, 3067, 3130
BstMCI	CGRYCG	1 cut(s)	447
BstNSI	RCATGY	2 cut(s)	2090, 2332
BstPAI	GACNNNNGTC	1 cut(s)	302
BstSFI	CTRYAG	1 cut(s)	1533
BstSLI	GKGCMC	2 cut(s)	113, 1720
BstUI	CGCG	1 cut(s)	2378
BstV1I	GCAGC	9 cut(s)	169, 242, 1963, 2167, 2210, 2694, 2851, 3123, 3212
BstV2I	GAAGAC	3 cut(s)	164, 816, 2032
BstX2I	RGATCY	1 cut(s)	1504
BstXI	CCANNNNNNTGG	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	1504
Bsu15I	ATCGAT	1 cut(s)	447
BsuI	GTATCC	1 cut(s)	3098
BsuTUI	ATCGAT	1 cut(s)	447
BtgI	CCRYGG	2 cut(s)	600, 843
BtgZI	GCGATG	1 cut(s)	200
BtrI	CACGTC	4 cut(s)	139, 1260, 1637, 3128
BtsCI	GGATG	9 cut(s)	10, 327, 372, 1082, 1237, 1534, 1867, 1945, 2944
BtsIMutI	CAGTG	6 cut(s)	137, 191, 2110, 2506, 2805, 2964
BveI	ACCTGC	2 cut(s)	1882, 3182
Cac8I	GCNNGC	6 cut(s)	144, 1080, 1794, 1822, 2007, 3038
CaiI	CAGNNNCTG	2 cut(s)	2351, 3164
CciI	TCATGA	2 cut(s)	1399, 2242
CfoI	GCGC	4 cut(s)	260, 312, 3010, 3027
Cfr10I	RCCGGY	1 cut(s)	1059
Cfr9I	CCCGGG	2 cut(s)	162, 3361
ClaI	ATCGAT	1 cut(s)	447
CseI	GACGC	3 cut(s)	220, 229, 1838
DinI	GGCGCC	1 cut(s)	311
DpnI	GATC	8 cut(s)	446, 869, 1506, 2175, 2797, 3033, 3069, 3132
DpnII	GATC	8 cut(s)	444, 867, 1504, 2173, 2795, 3031, 3067, 3130
DraI	TTTAAA	1 cut(s)	2464
DrdI	GACNNNNNNGTC	1 cut(s)	1569
DriI	GACNNNNNGTC	1 cut(s)	1630
DseDI	GACNNNNNNGTC	1 cut(s)	1569
EaeI	YGGCCR	1 cut(s)	538
Eam1104I	CTCTTC	5 cut(s)	78, 439, 1495, 1890, 3069
Eam1105I	GACNNNNNGTC	1 cut(s)	1630
EarI	CTCTTC	5 cut(s)	78, 439, 1495, 1890, 3069
EciI	GGCGGA	1 cut(s)	1668
Ecl136II	GAGCTC	1 cut(s)	342
Eco130I	CCWWGG	2 cut(s)	600, 843
Eco147I	AGGCCT	1 cut(s)	1990
Eco24I	GRGCYC	2 cut(s)	113, 344
Eco31I	GGTCTC	1 cut(s)	668
Eco32I	GATATC	1 cut(s)	2237
Eco47I	GGWCC	7 cut(s)	1676, 1754, 2527, 2656, 2669, 2747, 3050
Eco53kI	GAGCTC	1 cut(s)	342
Eco57I	CTGAAG	5 cut(s)	1238, 1779, 2188, 2295, 2370
Eco88I	CYCGRG	2 cut(s)	162, 3361
EcoICRI	GAGCTC	1 cut(s)	342
EcoNI	CCTNNNNNAGG	2 cut(s)	117, 858
EcoO109I	RGGNCCY	5 cut(s)	109, 110, 2527, 2656, 3050
EcoRI	GAATTC	3 cut(s)	318, 2621, 3367
EcoRV	GATATC	1 cut(s)	2237
EcoT14I	CCWWGG	2 cut(s)	600, 843
EcoT38I	GRGCYC	2 cut(s)	113, 344
EgeI	GGCGCC	1 cut(s)	311
EheI	GGCGCC	1 cut(s)	311
ErhI	CCWWGG	2 cut(s)	600, 843
Esp3I	CGTCTC	1 cut(s)	203
FalI	AAGNNNNNCTT	4 cut(s)	1103, 1135, 3180, 3212
FaqI	GGGAC	3 cut(s)	2431, 2513, 3063
FauI	CCCGC	1 cut(s)	1443
FokI	GGATG	9 cut(s)	17, 314, 379, 1069, 1244, 1541, 1874, 1952, 2951
FriOI	GRGCYC	2 cut(s)	113, 344
FspBI	CTAG	7 cut(s)	711, 936, 1307, 1821, 2177, 2232, 2265
GlaI	GCGC	4 cut(s)	259, 311, 3009, 3026
GsaI	CCCAGC	1 cut(s)	2831
GsuI	CTGGAG	2 cut(s)	1167, 3039
HaeII	RGCGCY	2 cut(s)	313, 3028
HapII	CCGG	7 cut(s)	163, 247, 307, 357, 1060, 1319, 3362
HgaI	GACGC	3 cut(s)	220, 229, 1838
HhaI	GCGC	4 cut(s)	260, 312, 3010, 3027
Hin1I	GRCGYC	2 cut(s)	240, 310
Hin6I	GCGC	4 cut(s)	258, 310, 3008, 3025
HinP1I	GCGC	4 cut(s)	258, 310, 3008, 3025
HincII	GTYRAC	2 cut(s)	1735, 2921
HindII	GTYRAC	2 cut(s)	1735, 2921
HindIII	AAGCTT	2 cut(s)	492, 1112
HpaII	CCGG	7 cut(s)	163, 247, 307, 357, 1060, 1319, 3362
HphI	GGTGA	6 cut(s)	538, 1137, 1904, 2111, 2581, 2786
Hpy166II	GTNNAC	6 cut(s)	1292, 1340, 1420, 1646, 1735, 2921
Hpy8I	GTNNAC	6 cut(s)	1292, 1340, 1420, 1646, 1735, 2921
Hpy99I	CGWCG	3 cut(s)	140, 227, 1155
HpyCH4IV	ACGT	5 cut(s)	138, 1259, 1636, 1801, 3127
HpySE526I	ACGT	5 cut(s)	138, 1259, 1636, 1801, 3127
Hsp92I	GRCGYC	2 cut(s)	240, 310
HspAI	GCGC	4 cut(s)	258, 310, 3008, 3025
KasI	GGCGCC	1 cut(s)	309
KpnI	GGTACC	1 cut(s)	2303
Kzo9I	GATC	8 cut(s)	444, 867, 1504, 2173, 2795, 3031, 3067, 3130
LguI	GCTCTTC	1 cut(s)	1890
LmnI	GCTCC	4 cut(s)	365, 632, 985, 2107
Lsp1109I	GCAGC	9 cut(s)	169, 242, 1963, 2167, 2210, 2694, 2851, 3123, 3212
MaeI	CTAG	7 cut(s)	711, 936, 1307, 1821, 2177, 2232, 2265
MaeII	ACGT	5 cut(s)	138, 1259, 1636, 1801, 3127
MaeIII	GTNAC	6 cut(s)	544, 642, 1309, 1632, 2455, 2962
MalI	GATC	8 cut(s)	446, 869, 1506, 2175, 2797, 3033, 3069, 3132
MboI	GATC	8 cut(s)	444, 867, 1504, 2173, 2795, 3031, 3067, 3130
MfeI	CAATTG	2 cut(s)	1866, 2579
MflI	RGATCY	1 cut(s)	1504
MhlI	GDGCHC	4 cut(s)	113, 344, 1720, 2112
MlsI	TGGCCA	1 cut(s)	540
MluNI	TGGCCA	1 cut(s)	540
Mly113I	GGCGCC	1 cut(s)	310
MlyI	GAGTC	7 cut(s)	737, 1169, 1356, 1385, 1412, 1777, 3333
MmeI	TCCRAC	6 cut(s)	50, 987, 1023, 1839, 2158, 2310
Mox20I	TGGCCA	1 cut(s)	540
MroXI	GAANNNNTTC	1 cut(s)	1696
MscI	TGGCCA	1 cut(s)	540
MseI	TTAA	9 cut(s)	914, 977, 1010, 1056, 2450, 2463, 2538, 3176, 3252
Msp20I	TGGCCA	1 cut(s)	540
MspI	CCGG	7 cut(s)	163, 247, 307, 357, 1060, 1319, 3362
MunI	CAATTG	2 cut(s)	1866, 2579
Mva1269I	GAATGC	1 cut(s)	1080
MvnI	CGCG	1 cut(s)	2378
NarI	GGCGCC	1 cut(s)	310
NciI	CCSGG	6 cut(s)	163, 164, 248, 357, 3362, 3363
NcoI	CCATGG	2 cut(s)	600, 843
NdeII	GATC	8 cut(s)	444, 867, 1504, 2173, 2795, 3031, 3067, 3130
NheI	GCTAGC	1 cut(s)	1820
NmuCI	GTSAC	6 cut(s)	544, 642, 1309, 1632, 2455, 2962
NspI	RCATGY	2 cut(s)	2090, 2332
PagI	TCATGA	2 cut(s)	1399, 2242
PaqCI	CACCTGC	1 cut(s)	1882
PceI	AGGCCT	1 cut(s)	1990
PciI	ACATGT	2 cut(s)	2086, 2328
PciSI	GCTCTTC	1 cut(s)	1890
PctI	GAATGC	1 cut(s)	1080
PdmI	GAANNNNTTC	1 cut(s)	1696
PfeI	GAWTC	6 cut(s)	1102, 1490, 1814, 2080, 2575, 2777
PfoI	TCCNGGA	1 cut(s)	362
Ple19I	CGATCG	1 cut(s)	447
PleI	GAGTC	7 cut(s)	736, 1168, 1355, 1385, 1411, 1776, 3333
PluTI	GGCGCC	1 cut(s)	313
PpsI	GAGTC	7 cut(s)	736, 1168, 1355, 1385, 1411, 1776, 3333
Ppu21I	YACGTR	1 cut(s)	1802
PpuMI	RGGWCCY	3 cut(s)	2527, 2656, 3050
PscI	ACATGT	2 cut(s)	2086, 2328
PshAI	GACNNNNGTC	1 cut(s)	302
PshBI	ATTAAT	1 cut(s)	3176
Psp124BI	GAGCTC	1 cut(s)	344
Psp5II	RGGWCCY	3 cut(s)	2527, 2656, 3050
PspFI	CCCAGC	1 cut(s)	2827
PspOMI	GGGCCC	1 cut(s)	109
PspPPI	RGGWCCY	3 cut(s)	2527, 2656, 3050
PsrI	GAACNNNNNNTAC	2 cut(s)	2251, 2283
PstNI	CAGNNNCTG	2 cut(s)	2351, 3164
PsuI	RGATCY	1 cut(s)	1504
PvuI	CGATCG	1 cut(s)	447
SacI	GAGCTC	1 cut(s)	344
SapI	GCTCTTC	1 cut(s)	1890
SaqAI	TTAA	9 cut(s)	914, 977, 1010, 1056, 2450, 2463, 2538, 3176, 3252
Sau3AI	GATC	8 cut(s)	444, 867, 1504, 2173, 2795, 3031, 3067, 3130
ScaI	AGTACT	3 cut(s)	1775, 1965, 2269
SchI	GAGTC	7 cut(s)	737, 1169, 1356, 1385, 1412, 1777, 3333
SduI	GDGCHC	4 cut(s)	113, 344, 1720, 2112
SfcI	CTRYAG	1 cut(s)	1533
SfoI	GGCGCC	1 cut(s)	311
SinI	GGWCC	7 cut(s)	1676, 1754, 2527, 2656, 2669, 2747, 3050
SmaI	CCCGGG	2 cut(s)	164, 3363
SmlI	CTYRAG	1 cut(s)	2075
SmoI	CTYRAG	1 cut(s)	2075
SseBI	AGGCCT	1 cut(s)	1990
SsiI	CCGC	5 cut(s)	261, 325, 1450, 1679, 2975
SspDI	GGCGCC	1 cut(s)	309
SspMI	CTAG	7 cut(s)	711, 936, 1307, 1821, 2177, 2232, 2265
SstI	GAGCTC	1 cut(s)	344
StuI	AGGCCT	1 cut(s)	1990
StyI	CCWWGG	2 cut(s)	600, 843
TaiI	ACGT	5 cut(s)	141, 1262, 1639, 1804, 3130
TaqI	TCGA	6 cut(s)	404, 443, 447, 555, 1345, 2931
TatI	WGTACW	5 cut(s)	280, 1773, 1949, 1963, 2267
TauI	GCSGC	2 cut(s)	263, 2978
TfiI	GAWTC	6 cut(s)	1102, 1490, 1814, 2080, 2575, 2777
Tru1I	TTAA	9 cut(s)	914, 977, 1010, 1056, 2450, 2463, 2538, 3176, 3252
Tru9I	TTAA	9 cut(s)	914, 977, 1010, 1056, 2450, 2463, 2538, 3176, 3252
TscAI	CASTG	6 cut(s)	137, 198, 2117, 2506, 2805, 2971
TseFI	GTSAC	6 cut(s)	544, 642, 1309, 1632, 2455, 2962
TseI	GCWGC	9 cut(s)	182, 255, 1976, 2180, 2198, 2682, 2864, 3111, 3200
Tsp45I	GTSAC	6 cut(s)	544, 642, 1309, 1632, 2455, 2962
TspGWI	ACGGA	2 cut(s)	874, 2579
TspMI	CCCGGG	2 cut(s)	162, 3361
TspRI	CASTG	6 cut(s)	137, 198, 2117, 2506, 2805, 2971
VpaK11BI	GGWCC	7 cut(s)	1676, 1754, 2527, 2656, 2669, 2747, 3050
VspI	ATTAAT	1 cut(s)	3176
XagI	CCTNNNNNAGG	2 cut(s)	117, 858
XapI	RAATTY	8 cut(s)	318, 579, 1193, 1930, 2621, 2637, 2728, 3367
XbaI	TCTAGA	1 cut(s)	2231
XceI	RCATGY	2 cut(s)	2090, 2332
XcmI	CCANNNNNNNNNTGG	2 cut(s)	227, 2293
XmaI	CCCGGG	2 cut(s)	162, 3361
XmnI	GAANNNNTTC	1 cut(s)	1696
XspI	CTAG	7 cut(s)	711, 936, 1307, 1821, 2177, 2232, 2265
ZrmI	AGTACT	3 cut(s)	1775, 1965, 2269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.