RchiOBHm_Chr2g0139701

Calmodulin-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0006784
Physical Location & Seq
Reverse (-)
57210997 .. 57217470
6474 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51021

Sequence Viewer

Length: 2778 bp
ATGGTTGCCAATTCCTTCACTCCTGGCTCCATTGTATCGGTGTCACTACCTTGTTTGAGAAGTAGAGTTTCAGAGAGCTTTCCTCTCAGCTCATTAGCAGATGAATGTGCTAGATGCTTCGGGGTTGAGTCTTGCAAAGGTTTGGCTAATGAACCAGGGAACTACTTTGCTATTGCAACTATATTTCCTTCTTCTAAGGTTTCAAAGAACGGGGTACGACTGTCTTCAAATCTTTCAAAGACCATGGGTTGTCCTGCATCAGGCAGGATCATATTTATCCACTCCGTACAAAATACAGTCCGAGCTGGTCTTTTAAGTGATACAGAAAAACCATCTAGTACCAAAGATTGCCTCTCTGTGTCCGACTGTAAGGAGTTAATTTTGGAGCTTCTCCATTCCAACAGTAGATTAACTATGAACACTACCTCCACAAACACTTCTGCTGAAAAATCGTTTTACCGGCCTGAAAATGGAATGCCTGCATCCCCTAAGACACCATTGAATCCATCAAAGCTTAGCTTTTCAAATAGAAGTCCATTAGCTTCACCTCGTCGTGAGGAGTCAGCATCAAGTGTAATCACTCCAGATGAAAAATTTGTTGAACCTTTTGATGTTCAAGAGGTTTTAGGGGATGACACTTCAAAAAGACTTCTTCAGACGTGTGCTACTACATGGTTGTATTCTCGTTGTTTACTTCGTGGAAATCTAGTGACTATTCCGGTGCTTTCACAGCATTGTTTACTTCGAGTCATTGGTGCTAAGAGTTTATCAGATGATAAAGCTAATAATGATTCGCTTCATGAGTCCTTTGAGTTAGTGGACAAAGTAAATGATGCTTTTCTAGTGAAGCGGGAAACAAAAGTATGCTTTCATTTGCCATCAAACCTGGAATCTAAAAGAAGAGATCTTTCTATGGTGCAATGCAAGGATGCTATAGCTAATACAGGAGATGACCCATCAAGACTGGGTGGTCTTTCAAAAGAATATGCAGTTTTGAAAGACATCATAATATCATCATCTATGGACACCTTGTCACGTCTTGGTTTACGACCTACAAAGGGAGTGCTTCTTCATGGTCCGCCTGGTACGGGAAAGACTTCTTTGGCTCAGTTATGTGCCCGTGATGCTGGTGTCAACTTTTTCGCTGTCAATGGACCTGAAGTTGTGAGTCAGTACTATGGAAAAAGTGAGCAAGCATTACGTGAAGTTTTTGATTCAGCTAGCCAAGATGCACCTTCTGTGGTATTCATTGATGAGTTGGATGCAATTGCACCTGCAAGGAAAGAGGGAGGTGAAGAGCTATCTCTGAGAATGGTTGCTACACTATTGAATTCGATGGATGGGATTAGTACAACTGAAAGAGTACTTGTAATTGCTGCTACCAACAGGCCTGATAGTATTGAGCCTGCACTCAGACGACCTGGAAGACTTGACAGGGAAATTGAAATAGGAGTGCCATCTCCCAAACAACGGCTTGAGATTCTACATGTTCTTGTCGGTGAAATGGAGCACTGTCTTTCAGATGTGCAAGTCCAACAACTTGCTAATGCTACACATGGTTTCGTAGGCTCTGATCTAGCTGCCCTTTGCAACGAGGCAGCCTTCAGTTCTCTTAGGCGTTATGTCAATTCTAGATATCCTCATGATTATTTGCATAGAACATCTAGTACTTCTGAAGATTGTTCCAACAGTCTAATGGTACCTGATTGCTTAGAAGATACAACAGACATGTCAAGGGATTACTCAGATACTGCATCTTCATCTATCACACATATGGCGTTTTCTTCAGAGAATTGTTTGTCTGTGCATTTGAAGGGGACAAATCAAGATGACGATATTGAAGAAGAATTAAAAGTGACTTTTAAAGATTTTGAAAGTGCCAGGATAAAAGTGAGGCCCAGTGCTATGCGAGAGGTAATCGTTGAGGTCCCGAAGGTTAATTGGGAAGATGTTGGGGGTCAGACGGAGGTGAAGAATCAATTGATAGAAGCTGTAATGTGGCCCCAAAAGCACCAGAACGAATTCAAGCGTATAGGAATTTCTCCCCCAACAGGGGTCCTCATGTTTGGTCCTCCTGGTTGCAGCAAAACCCTCATGGCTCGTGCAGTAGCTTCTGAGGCACGGCTGAATTTCCTTTCTGTGAAGGGTCCAGAACTTTATAGCAAATGGGTTGGTGAATCTGAGAAGGCTGTGAGATCAGTGTTTGCAAAGGCAAGGGCTAATGCCCCAGCAATCATATTCTTTGATGAAATTGACGGTCTTGCTGCCATTCGTGGGAAGGAAAATGATGGAGTGTCTGTTTCAGATAGGGTCATAAGTCAACTTCTTGTCGAAATGGATGGTTTGCAAGAAAGAGTTGATGTCACTGTTATTGCGGCTACAAATCGGCCCGACAAGATTGATAGTGCGCTTCTAAGACCAGGGCGCTTTGATCGCTTGCTATATGTGGGACCTCCAGATGAGACTGATCGTGAAGAGATATTTCGTATCCATTTGAACAATATGAAATGCAGCTATATCAACAGACGTGATCTTGCTCGTCAGGCCGAAGGCTATACAGGTGCTGATATTAGATTAATCTGTCGGGAAGCAGGTCTTGCAGCTATTGAGGAGAGCTTATGCCGTAAGGAGAGCCTTGATGCCTTAGAAATTAAAATGCAACATTTAGAGACTGCGATTAGACAAGTGAAGCCAACAAAAACTCAGTTTTATCAAGAGCTATCTGGAAAGTTTCAAAGACTCGTTCTTTCTAACATAAACCCGGGGAATTCATCTTAG

Protein Analysis

925

Amino Acids

101.67

Weight (kDa)

5.88

Isoelectric Point (pI)

43.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DPBB_CI111 PF26429 1 - 96 4.9e-41 CI111 double-psi beta barrel domain
RuvB_N PF05496 353 - 426 8.1e-06 Holliday junction DNA helicase RuvB P-loop domain
AAA_16 PF13191 353 - 458 4.3e-06 AAA ATPase domain
AAA PF00004 355 - 484 3.2e-43 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 508 - 544 4.1e-12 AAA+ lid domain
AAA PF00004 686 - 817 4.7e-42 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 843 - 873 4.6e-10 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1282
AasI GACNNNNNNGTC 1 cut(s) 969
Acc36I ACCTGC 2 cut(s) 1282, 2582
Acc65I GGTACC 1 cut(s) 1699
AccB1I GGYRCC 1 cut(s) 1699
AciI CCGC 3 cut(s) 850, 1079, 2375
AclWI GGATC 1 cut(s) 275
AcsI RAATTY 6 cut(s) 593, 1330, 2021, 2037, 2128, 2767
AcuI CTGAAG 5 cut(s) 638, 1179, 1588, 1695, 1770
AfaI GTAC 9 cut(s) 216, 288, 340, 1087, 1175, 1351, 1365, 1669, 1701
AfiI CCNNNNNNNGG 9 cut(s) 260, 470, 1058, 1088, 1470, 2051, 2052, 2053, 2274
AflIII ACRYGT 3 cut(s) 659, 1486, 1728
AhdI GACNNNNNGTC 1 cut(s) 1030
AjiI CACGTC 3 cut(s) 660, 1037, 2528
AjnI CCWGG 8 cut(s) 22, 154, 885, 1081, 1420, 1880, 2074, 2419
AloI GAACNNNNNNTCC 2 cut(s) 410, 442
Alw21I GWGCWC 1 cut(s) 1512
Alw26I GTCTC 2 cut(s) 2456, 2663
AlwI GGATC 1 cut(s) 275
AlwNI CAGNNNCTG 2 cut(s) 1751, 2564
Ama87I CYCGRG 1 cut(s) 2761
AoxI GGCC 6 cut(s) 461, 1388, 1895, 2000, 2387, 2544
ApeKI GCWGC 7 cut(s) 1376, 1580, 1598, 2082, 2264, 2511, 2600
ApoI RAATTY 6 cut(s) 593, 1330, 2021, 2037, 2128, 2767
AseI ATTAAT 1 cut(s) 2576
Asp700I GAANNNNTTC 2 cut(s) 1096, 2021
Asp718I GGTACC 1 cut(s) 1699
AspLEI GCGC 2 cut(s) 2410, 2427
AsuC2I CCSGG 2 cut(s) 2762, 2763
AsuHPI GGTGA 5 cut(s) 537, 1304, 1511, 1981, 2186
AsuNHI GCTAGC 1 cut(s) 1220
AvaI CYCGRG 1 cut(s) 2761
AvaII GGWCC 7 cut(s) 1076, 1154, 1927, 2056, 2069, 2147, 2450
BaeGI GKGCMC 1 cut(s) 1120
BaeI ACNNNNGTAYC 2 cut(s) 206, 239
BanI GGYRCC 1 cut(s) 1699
BauI CACGAG 1 cut(s) 2100
BbsI GAAGAC 2 cut(s) 216, 1432
Bbv12I GWGCWC 1 cut(s) 1512
BbvI GCAGC 7 cut(s) 1363, 1567, 1610, 2094, 2251, 2523, 2612
BccI CCATC 9 cut(s) 340, 514, 886, 964, 1330, 1334, 1465, 2282, 2333
BceAI ACGGC 3 cut(s) 1487, 2138, 2607
BciT130I CCWGG 8 cut(s) 24, 156, 887, 1083, 1422, 1882, 2076, 2421
BciVI GTATCC 1 cut(s) 2498
BcnI CCSGG 2 cut(s) 2762, 2763
BcoDI GTCTC 2 cut(s) 2456, 2663
BfaI CTAG 8 cut(s) 111, 336, 707, 842, 1221, 1577, 1632, 1665
BfmI CTRYAG 1 cut(s) 933
BfoI RGCGCY 1 cut(s) 2428
BfuAI ACCTGC 2 cut(s) 1282, 2582
BfuI GTATCC 1 cut(s) 2498
BglII AGATCT 1 cut(s) 904
BisI GCNGC 8 cut(s) 1377, 1581, 1599, 2083, 2265, 2376, 2512, 2601
BlpI GCTNAGC 1 cut(s) 515
BlsI GCNGC 8 cut(s) 1378, 1582, 1600, 2084, 2266, 2377, 2513, 2602
BmcAI AGTACT 3 cut(s) 1175, 1365, 1669
Bme18I GGWCC 7 cut(s) 1076, 1154, 1927, 2056, 2069, 2147, 2450
BmeRI GACNNNNNGTC 1 cut(s) 1030
BmeT110I CYCGRG 1 cut(s) 2761
BmgBI CACGTC 3 cut(s) 660, 1037, 2528
BmiI GGNNCC 7 cut(s) 28, 1701, 1929, 2003, 2057, 2148, 2451
BmrI ACTGGG 2 cut(s) 974, 1893
BmtI GCTAGC 1 cut(s) 1224
BmuI ACTGGG 2 cut(s) 974, 1893
BpiI GAAGAC 2 cut(s) 216, 1432
BplI GAGNNNNNCTC 2 cut(s) 67, 99
BpmI CTGGAG 2 cut(s) 567, 2439
Bpu1102I GCTNAGC 1 cut(s) 515
BpuEI CTTGAG 1 cut(s) 1496
BpuMI CCSGG 2 cut(s) 2762, 2763
BsaAI YACGTR 1 cut(s) 1202
BsaJI CCNNGG 5 cut(s) 155, 243, 2420, 2761, 2762
BsaWI WCCGGW 1 cut(s) 718
BsaXI ACNNNNNCTCC 4 cut(s) 410, 440, 2283, 2313
Bsc4I CCNNNNNNNGG 9 cut(s) 260, 470, 1058, 1088, 1470, 2051, 2052, 2053, 2274
Bse118I RCCGGY 1 cut(s) 459
Bse1I ACTGG 2 cut(s) 969, 1899
Bse3DI GCAATG 1 cut(s) 926
BseBI CCWGG 8 cut(s) 24, 156, 887, 1083, 1422, 1882, 2076, 2421
BseDI CCNNGG 5 cut(s) 155, 243, 2420, 2761, 2762
BseGI GGATG 6 cut(s) 482, 637, 934, 1267, 1345, 2344
BseLI CCNNNNNNNGG 9 cut(s) 260, 470, 1058, 1088, 1470, 2051, 2052, 2053, 2274
BseMI GCAATG 1 cut(s) 926
BseMII CTCAG 8 cut(s) 100, 1121, 1298, 1426, 1758, 2106, 2172, 2717
BseNI ACTGG 2 cut(s) 969, 1899
BseRI GAGGAG 2 cut(s) 572, 2624
BseSI GKGCMC 1 cut(s) 1120
BseXI GCAGC 7 cut(s) 1363, 1567, 1610, 2094, 2251, 2523, 2612
BseYI CCCAGC 1 cut(s) 2227
BsgI GTGCAG 2 cut(s) 1392, 2124
BshFI GGCC 6 cut(s) 463, 1390, 1897, 2002, 2389, 2546
BshNI GGYRCC 1 cut(s) 1699
BsiHKAI GWGCWC 1 cut(s) 1512
BsiHKCI CYCGRG 1 cut(s) 2761
BsiSI CCGG 3 cut(s) 460, 719, 2762
BslFI GGGAC 3 cut(s) 1831, 1913, 2463
BslI CCNNNNNNNGG 9 cut(s) 260, 470, 1058, 1088, 1470, 2051, 2052, 2053, 2274
BsmAI GTCTC 2 cut(s) 2456, 2663
BsmFI GGGAC 3 cut(s) 1831, 1913, 2463
BsmI GAATGC 1 cut(s) 480
BsnI GGCC 6 cut(s) 463, 1390, 1897, 2002, 2389, 2546
BsoBI CYCGRG 1 cut(s) 2761
Bsp1286I GDGCHC 2 cut(s) 1120, 1512
Bsp143I GATC 7 cut(s) 267, 904, 1573, 2195, 2431, 2467, 2530
Bsp1720I GCTNAGC 1 cut(s) 515
Bsp19I CCATGG 1 cut(s) 243
BspACI CCGC 3 cut(s) 850, 1079, 2375
BspANI GGCC 6 cut(s) 463, 1390, 1897, 2002, 2389, 2546
BspCNI CTCAG 8 cut(s) 99, 1120, 1299, 1425, 1757, 2107, 2173, 2716
BspHI TCATGA 2 cut(s) 799, 1642
BspLI GGNNCC 7 cut(s) 28, 1701, 1929, 2003, 2057, 2148, 2451
BspMI ACCTGC 2 cut(s) 1282, 2582
BspOI GCTAGC 1 cut(s) 1224
BspPI GGATC 1 cut(s) 275
BspQI GCTCTTC 1 cut(s) 1290
BspT107I GGYRCC 1 cut(s) 1699
BsrDI GCAATG 1 cut(s) 926
BsrFI RCCGGY 1 cut(s) 459
BsrI ACTGG 2 cut(s) 969, 1899
BssAI RCCGGY 1 cut(s) 459
BssECI CCNNGG 5 cut(s) 155, 243, 2420, 2761, 2762
BssMI GATC 7 cut(s) 267, 904, 1573, 2195, 2431, 2467, 2530
BssSI CACGAG 1 cut(s) 2100
BssT1I CCWWGG 1 cut(s) 243
Bst2BI CACGAG 1 cut(s) 2100
Bst2UI CCWGG 8 cut(s) 24, 156, 887, 1083, 1422, 1882, 2076, 2421
Bst4CI ACNGT 8 cut(s) 222, 298, 368, 404, 1514, 1691, 2258, 2368
Bst6I CTCTTC 3 cut(s) 895, 1290, 2469
BstAPI GCANNNNNTGC 1 cut(s) 2597
BstBAI YACGTR 1 cut(s) 1202
BstC8I GCNNGC 5 cut(s) 480, 1194, 1222, 1407, 2438
BstDSI CCRYGG 1 cut(s) 243
BstENI CCTNNNNNAGG 1 cut(s) 258
BstF5I GGATG 6 cut(s) 482, 637, 934, 1267, 1345, 2344
BstH2I RGCGCY 1 cut(s) 2428
BstHHI GCGC 2 cut(s) 2410, 2427
BstKTI GATC 7 cut(s) 270, 907, 1576, 2198, 2434, 2470, 2533
BstMAI GTCTC 2 cut(s) 2456, 2663
BstMBI GATC 7 cut(s) 267, 904, 1573, 2195, 2431, 2467, 2530
BstMWI GCNNNNNNNGC 7 cut(s) 730, 1124, 2008, 2117, 2433, 2543, 2597
BstNI CCWGG 8 cut(s) 24, 156, 887, 1083, 1422, 1882, 2076, 2421
BstNSI RCATGY 2 cut(s) 1490, 1732
BstSFI CTRYAG 1 cut(s) 933
BstSLI GKGCMC 1 cut(s) 1120
BstV1I GCAGC 7 cut(s) 1363, 1567, 1610, 2094, 2251, 2523, 2612
BstV2I GAAGAC 2 cut(s) 216, 1432
BstX2I RGATCY 1 cut(s) 904
BstYI RGATCY 1 cut(s) 904
BsuI GTATCC 1 cut(s) 2498
BsuRI GGCC 6 cut(s) 463, 1390, 1897, 2002, 2389, 2546
BtgI CCRYGG 1 cut(s) 243
BtrI CACGTC 3 cut(s) 660, 1037, 2528
BtsCI GGATG 6 cut(s) 482, 637, 934, 1267, 1345, 2344
BtsIMutI CAGTG 4 cut(s) 1510, 1906, 2205, 2364
BveI ACCTGC 2 cut(s) 1282, 2582
Cac8I GCNNGC 5 cut(s) 480, 1194, 1222, 1407, 2438
CaiI CAGNNNCTG 2 cut(s) 1751, 2564
CciI TCATGA 2 cut(s) 799, 1642
CfoI GCGC 2 cut(s) 2410, 2427
Cfr10I RCCGGY 1 cut(s) 459
Cfr9I CCCGGG 1 cut(s) 2761
Csp6I GTAC 9 cut(s) 215, 287, 339, 1086, 1174, 1350, 1364, 1668, 1700
CviQI GTAC 9 cut(s) 215, 287, 339, 1086, 1174, 1350, 1364, 1668, 1700
DpnI GATC 7 cut(s) 269, 906, 1575, 2197, 2433, 2469, 2532
DpnII GATC 7 cut(s) 267, 904, 1573, 2195, 2431, 2467, 2530
DraI TTTAAA 1 cut(s) 1864
DrdI GACNNNNNNGTC 1 cut(s) 969
DriI GACNNNNNGTC 1 cut(s) 1030
DseDI GACNNNNNNGTC 1 cut(s) 969
Eam1104I CTCTTC 3 cut(s) 895, 1290, 2469
Eam1105I GACNNNNNGTC 1 cut(s) 1030
EarI CTCTTC 3 cut(s) 895, 1290, 2469
EciI GGCGGA 1 cut(s) 1068
Eco130I CCWWGG 1 cut(s) 243
Eco147I AGGCCT 1 cut(s) 1390
Eco32I GATATC 1 cut(s) 1637
Eco47I GGWCC 7 cut(s) 1076, 1154, 1927, 2056, 2069, 2147, 2450
Eco57I CTGAAG 5 cut(s) 638, 1179, 1588, 1695, 1770
Eco88I CYCGRG 1 cut(s) 2761
EcoNI CCTNNNNNAGG 1 cut(s) 258
EcoO109I RGGNCCY 3 cut(s) 1927, 2056, 2450
EcoRI GAATTC 3 cut(s) 1330, 2021, 2767
EcoRII CCWGG 8 cut(s) 22, 154, 885, 1081, 1420, 1880, 2074, 2419
EcoRV GATATC 1 cut(s) 1637
EcoT14I CCWWGG 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 243
FalI AAGNNNNNCTT 4 cut(s) 503, 535, 2580, 2612
FaqI GGGAC 3 cut(s) 1831, 1913, 2463
FauI CCCGC 1 cut(s) 843
FauNDI CATATG 1 cut(s) 1773
Fnu4HI GCNGC 8 cut(s) 1377, 1581, 1599, 2083, 2265, 2376, 2512, 2601
FokI GGATG 6 cut(s) 469, 644, 941, 1274, 1352, 2351
Fsp4HI GCNGC 8 cut(s) 1377, 1581, 1599, 2083, 2265, 2376, 2512, 2601
FspBI CTAG 8 cut(s) 111, 336, 707, 842, 1221, 1577, 1632, 1665
GlaI GCGC 2 cut(s) 2409, 2426
GluI GCNGC 8 cut(s) 1377, 1581, 1599, 2083, 2265, 2376, 2512, 2601
GsaI CCCAGC 1 cut(s) 2231
GsuI CTGGAG 2 cut(s) 567, 2439
HaeII RGCGCY 1 cut(s) 2428
HaeIII GGCC 6 cut(s) 463, 1390, 1897, 2002, 2389, 2546
HapII CCGG 3 cut(s) 460, 719, 2762
HhaI GCGC 2 cut(s) 2410, 2427
Hin6I GCGC 2 cut(s) 2408, 2425
HinP1I GCGC 2 cut(s) 2408, 2425
HincII GTYRAC 2 cut(s) 1135, 2321
HindII GTYRAC 2 cut(s) 1135, 2321
HindIII AAGCTT 1 cut(s) 512
HpaII CCGG 3 cut(s) 460, 719, 2762
HphI GGTGA 5 cut(s) 537, 1304, 1511, 1981, 2186
Hpy166II GTNNAC 6 cut(s) 692, 740, 820, 1046, 1135, 2321
Hpy8I GTNNAC 6 cut(s) 692, 740, 820, 1046, 1135, 2321
Hpy99I CGWCG 1 cut(s) 555
HpyCH4III ACNGT 8 cut(s) 222, 298, 368, 404, 1514, 1691, 2258, 2368
HpyCH4IV ACGT 4 cut(s) 659, 1036, 1201, 2527
HpyF10VI GCNNNNNNNGC 7 cut(s) 730, 1124, 2008, 2117, 2433, 2543, 2597
HpySE526I ACGT 4 cut(s) 659, 1036, 1201, 2527
HspAI GCGC 2 cut(s) 2408, 2425
KpnI GGTACC 1 cut(s) 1703
Kzo9I GATC 7 cut(s) 267, 904, 1573, 2195, 2431, 2467, 2530
LguI GCTCTTC 1 cut(s) 1290
LmnI GCTCC 3 cut(s) 32, 385, 1507
Lsp1109I GCAGC 7 cut(s) 1363, 1567, 1610, 2094, 2251, 2523, 2612
MaeI CTAG 8 cut(s) 111, 336, 707, 842, 1221, 1577, 1632, 1665
MaeII ACGT 4 cut(s) 659, 1036, 1201, 2527
MaeIII GTNAC 5 cut(s) 42, 709, 1032, 1855, 2362
MalI GATC 7 cut(s) 269, 906, 1575, 2197, 2433, 2469, 2532
MboI GATC 7 cut(s) 267, 904, 1573, 2195, 2431, 2467, 2530
MfeI CAATTG 2 cut(s) 1266, 1979
MflI RGATCY 1 cut(s) 904
MhlI GDGCHC 2 cut(s) 1120, 1512
MlyI GAGTC 6 cut(s) 137, 569, 756, 812, 1177, 2733
MmeI TCCRAC 5 cut(s) 387, 423, 1239, 1558, 1710
MroXI GAANNNNTTC 2 cut(s) 1096, 2021
MseI TTAA 8 cut(s) 314, 377, 410, 1850, 1863, 1938, 2576, 2652
MslI CAYNNNNRTG 1 cut(s) 1772
MspI CCGG 3 cut(s) 460, 719, 2762
MunI CAATTG 2 cut(s) 1266, 1979
Mva1269I GAATGC 1 cut(s) 480
MvaI CCWGG 8 cut(s) 24, 156, 887, 1083, 1422, 1882, 2076, 2421
MwoI GCNNNNNNNGC 7 cut(s) 730, 1124, 2008, 2117, 2433, 2543, 2597
NciI CCSGG 2 cut(s) 2762, 2763
NcoI CCATGG 1 cut(s) 243
NdeI CATATG 1 cut(s) 1773
NdeII GATC 7 cut(s) 267, 904, 1573, 2195, 2431, 2467, 2530
NheI GCTAGC 1 cut(s) 1220
NlaIV GGNNCC 7 cut(s) 28, 1701, 1929, 2003, 2057, 2148, 2451
NmuCI GTSAC 5 cut(s) 42, 709, 1032, 1855, 2362
NspI RCATGY 2 cut(s) 1490, 1732
PagI TCATGA 2 cut(s) 799, 1642
PaqCI CACCTGC 1 cut(s) 1282
PceI AGGCCT 1 cut(s) 1390
PciI ACATGT 2 cut(s) 1486, 1728
PciSI GCTCTTC 1 cut(s) 1290
PctI GAATGC 1 cut(s) 480
PdmI GAANNNNTTC 2 cut(s) 1096, 2021
PfeI GAWTC 7 cut(s) 502, 791, 890, 1214, 1480, 1975, 2177
PkrI GCNGC 8 cut(s) 1378, 1582, 1600, 2084, 2266, 2377, 2513, 2602
PleI GAGTC 6 cut(s) 136, 568, 755, 811, 1176, 2733
PpsI GAGTC 6 cut(s) 136, 568, 755, 811, 1176, 2733
Ppu21I YACGTR 1 cut(s) 1202
PpuMI RGGWCCY 3 cut(s) 1927, 2056, 2450
PscI ACATGT 2 cut(s) 1486, 1728
PshBI ATTAAT 1 cut(s) 2576
Psp5II RGGWCCY 3 cut(s) 1927, 2056, 2450
Psp6I CCWGG 8 cut(s) 22, 154, 885, 1081, 1420, 1880, 2074, 2419
PspFI CCCAGC 1 cut(s) 2227
PspGI CCWGG 8 cut(s) 22, 154, 885, 1081, 1420, 1880, 2074, 2419
PspN4I GGNNCC 7 cut(s) 28, 1701, 1929, 2003, 2057, 2148, 2451
PspPPI RGGWCCY 3 cut(s) 1927, 2056, 2450
PsrI GAACNNNNNNTAC 2 cut(s) 1651, 1683
PstNI CAGNNNCTG 2 cut(s) 1751, 2564
PsuI RGATCY 1 cut(s) 904
RsaI GTAC 9 cut(s) 216, 288, 340, 1087, 1175, 1351, 1365, 1669, 1701
RsaNI GTAC 9 cut(s) 215, 287, 339, 1086, 1174, 1350, 1364, 1668, 1700
RseI CAYNNNNRTG 1 cut(s) 1772
SapI GCTCTTC 1 cut(s) 1290
SaqAI TTAA 8 cut(s) 314, 377, 410, 1850, 1863, 1938, 2576, 2652
SatI GCNGC 8 cut(s) 1377, 1581, 1599, 2083, 2265, 2376, 2512, 2601
Sau3AI GATC 7 cut(s) 267, 904, 1573, 2195, 2431, 2467, 2530
ScaI AGTACT 3 cut(s) 1175, 1365, 1669
SchI GAGTC 6 cut(s) 137, 569, 756, 812, 1177, 2733
SduI GDGCHC 2 cut(s) 1120, 1512
SfcI CTRYAG 1 cut(s) 933
SinI GGWCC 7 cut(s) 1076, 1154, 1927, 2056, 2069, 2147, 2450
SmaI CCCGGG 1 cut(s) 2763
SmiMI CAYNNNNRTG 1 cut(s) 1772
SmlI CTYRAG 1 cut(s) 1475
SmoI CTYRAG 1 cut(s) 1475
SseBI AGGCCT 1 cut(s) 1390
SsiI CCGC 3 cut(s) 850, 1079, 2375
SspMI CTAG 8 cut(s) 111, 336, 707, 842, 1221, 1577, 1632, 1665
StuI AGGCCT 1 cut(s) 1390
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 8 cut(s) 222, 298, 368, 404, 1514, 1691, 2258, 2368
TaiI ACGT 4 cut(s) 662, 1039, 1204, 2530
TaqI TCGA 3 cut(s) 745, 1334, 2331
TatI WGTACW 4 cut(s) 1173, 1349, 1363, 1667
TauI GCSGC 1 cut(s) 2378
TfiI GAWTC 7 cut(s) 502, 791, 890, 1214, 1480, 1975, 2177
Tru1I TTAA 8 cut(s) 314, 377, 410, 1850, 1863, 1938, 2576, 2652
Tru9I TTAA 8 cut(s) 314, 377, 410, 1850, 1863, 1938, 2576, 2652
TscAI CASTG 4 cut(s) 1517, 1906, 2205, 2371
TseFI GTSAC 5 cut(s) 42, 709, 1032, 1855, 2362
TseI GCWGC 7 cut(s) 1376, 1580, 1598, 2082, 2264, 2511, 2600
Tsp45I GTSAC 5 cut(s) 42, 709, 1032, 1855, 2362
TspGWI ACGGA 2 cut(s) 274, 1979
TspMI CCCGGG 1 cut(s) 2761
TspRI CASTG 4 cut(s) 1517, 1906, 2205, 2371
VpaK11BI GGWCC 7 cut(s) 1076, 1154, 1927, 2056, 2069, 2147, 2450
VspI ATTAAT 1 cut(s) 2576
XagI CCTNNNNNAGG 1 cut(s) 258
XapI RAATTY 6 cut(s) 593, 1330, 2021, 2037, 2128, 2767
XbaI TCTAGA 1 cut(s) 1631
XceI RCATGY 2 cut(s) 1490, 1732
XcmI CCANNNNNNNNNTGG 1 cut(s) 1693
XmaI CCCGGG 1 cut(s) 2761
XmnI GAANNNNTTC 2 cut(s) 1096, 2021
XspI CTAG 8 cut(s) 111, 336, 707, 842, 1221, 1577, 1632, 1665
ZrmI AGTACT 3 cut(s) 1175, 1365, 1669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.