Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006784

Physical Location & Seq

Genomic Coordinates Reverse (-)

59411440 .. 59413451

Gene Structure 2012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG397600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGAGCACTGTCTTTCAGATGTGCAAGTCCAACAACTTGCTAATGCTACACATGGTTTCGTAGGCTCTGATCTAGCTGCCCTTTGCAACGAGGCAGCCTTCAGTTCTCTTAGGCGTTATGTCAATTCTAGATATCCTCATGATTATTTGCATAGAACATCTAGTACTTATGAAGATTGTTCCAACAGTCTAATGGTACCTGATTTCTTAGAAGATACAACAGACATGTCAAGGGATTACTCAGATACCGCATCTTCATCTATCACACATTTGGCGTTTTCTTCAGACAATTGTTTGTCTGTGCATTTGAAGGGGACAAATCAAGATGACGATATTGAAGAAGAATTAAAAGTGGCTTTTAAAGATTTTGAAAGTGCCAGGATGAAAGTGAGGCCCAGTGCTATGCGAGAGGTAATTGTTGAGGTCCCGAAGGTTAATAGGGAAGATGTTGGTGGTCAGACGGAGGTGAAGAATCAATTGATAGAAGCTGTAATGTGGCCCCAAAAGCACCAGGATGAATTCAAGCATATAGGGATTTCTCCCCCAACAGGGGTCCTCATGTTTGGTCCTCCTGGTTGCAGCAAAACCCTCATGGCTCGTGCTGTAGCTTCTGAGGCACGGCTGAATTTCCTTTCTGTGAAGGGTCCAGAACTTTATAGCAAATGGGTTGGTGAATCTGAGAAGGCTGTGAGATCAGTGTTCGCAAAGGCAAGGGCTAATGCTCCAGCAATCATATTCATTGATGAAATTGACGGTCTTGCTGCCATTCGTGGGAAGGAAAATGATGGAGTGTCTGTTTCAGATATGGTCATAAGTCAACTTCTTGTCGAAATGGATGGTTTGCAAGAAAGAGTTGATATCACTGTTATTGCCGCAACAAATCGGCCCGACAAGATTGATAGTGTGCTTCTAAGACCAGGGCGCTTTGATCGCTTGCTATATGTGGGACCTCCAGATGAGACTGATCGTGAAGAGATATTCCGTATCCATTTGAACAATATGAAATGCAGCTATATCAACAGACATGATCTTGCTTGTCAGACCGCAGGCTATACAGGTGCTGATATTAGATTAATCTGTCAGGAAGCAGGTCTTGCAGCTATTGAGGAGAGCTTATGCCGTAAGGAGAGCCTTGATGCCTTAGAAATTAAAATGCAACATTTGGAGACTGCGATTAGACAAGTGAAGCCAACGAAAACTCAGTTTTATCAAGAGCTATCTGGAAAGTTTCAAAGACTCGTTCTTTCTAATATAAACCCGGGGAATTCGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AAA

Protein Analysis

424

Amino Acids

47.25

Weight (kDa)

5.28

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_lid_3	PF17862	7 - 43	1.6e-12	AAA+ lid domain
AAA	PF00004	185 - 316	2.5e-41	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	342 - 372	4.8e-10	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56690
fragaria_vesca	FvH4_6g32040 FvH4_6g32040 FvH4_6g32040 FvH4_6g32040 FvH4_6g32040
malus_domestica	MD09G1206200.v1.1
prunus_persica	Prupe.3G062600_v2.0.a1 Prupe.3G062600_v2.0.a1 Prupe.3G062600_v2.0.a1 Prupe.3G062600_v2.0.a1 Prupe.3G062600_v2.0.a1
pyrus_communis	pycom09g12300
rosa_chinensis	RchiOBHm_Chr2g0139701
rosa_laevigata	RLG00000019827
rosa_multiflora	Rmu_co8172878.1_g000001 Rmu_sc0009714.1_g000008
rosa_roxburghii	Rroxscaffold_2G00105270
rosa_rugosa	Rorug02G0359300 Rorug04G0364300 Rorug04G0364400
rosa_samantha	Rh2AG397600 Rh2AG409100 Rh2BG419400 Rh4CG452300
rosa_wichuraiana	Rw2G033460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1079
Acc65I	GGTACC	1 cut(s)	196
AccB1I	GGYRCC	1 cut(s)	196
AciI	CCGC	3 cut(s)	249, 873, 1044
AcsI	RAATTY	3 cut(s)	518, 625, 1264
AcuI	CTGAAG	2 cut(s)	85, 267
AfaI	GTAC	2 cut(s)	166, 198
AfiI	CCNNNNNNNGG	4 cut(s)	548, 549, 550, 771
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	6 cut(s)	310, 338, 371, 523, 994, 1232
AjnI	CCWGG	4 cut(s)	377, 510, 571, 916
AluBI	AGCT	7 cut(s)	77, 488, 608, 1011, 1100, 1113, 1216
AluI	AGCT	7 cut(s)	77, 488, 608, 1011, 1100, 1113, 1216
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	2 cut(s)	953, 1160
AlwNI	CAGNNNCTG	1 cut(s)	1061
Ama87I	CYCGRG	1 cut(s)	1258
AoxI	GGCC	3 cut(s)	392, 497, 884
ApeKI	GCWGC	6 cut(s)	77, 95, 579, 761, 1008, 1097
ApoI	RAATTY	3 cut(s)	518, 625, 1264
AseI	ATTAAT	1 cut(s)	1073
Asp718I	GGTACC	1 cut(s)	196
AspLEI	GCGC	1 cut(s)	924
AspS9I	GGNCC	8 cut(s)	393, 424, 498, 553, 566, 644, 885, 947
AsuC2I	CCSGG	2 cut(s)	1259, 1260
AsuHPI	GGTGA	2 cut(s)	478, 683
AvaI	CYCGRG	1 cut(s)	1258
AvaII	GGWCC	5 cut(s)	424, 553, 566, 644, 947
BanI	GGYRCC	1 cut(s)	196
BauI	CACGAG	1 cut(s)	597
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	6 cut(s)	64, 107, 591, 748, 1020, 1109
BccI	CCATC	2 cut(s)	779, 830
BceAI	ACGGC	2 cut(s)	635, 1104
BciT130I	CCWGG	4 cut(s)	379, 512, 573, 918
BciVI	GTATCC	1 cut(s)	995
BcnI	CCSGG	2 cut(s)	1259, 1260
BcoDI	GTCTC	2 cut(s)	953, 1160
BfaI	CTAG	3 cut(s)	74, 129, 162
BfmI	CTRYAG	1 cut(s)	603
BfoI	RGCGCY	1 cut(s)	925
BfuAI	ACCTGC	1 cut(s)	1079
BfuI	GTATCC	1 cut(s)	995
BisI	GCNGC	7 cut(s)	78, 96, 580, 762, 873, 1009, 1098
BlsI	GCNGC	7 cut(s)	79, 97, 581, 763, 874, 1010, 1099
BmcAI	AGTACT	1 cut(s)	166
Bme1390I	CCNGG	6 cut(s)	379, 512, 573, 918, 1259, 1260
Bme18I	GGWCC	5 cut(s)	424, 553, 566, 644, 947
BmeT110I	CYCGRG	1 cut(s)	1258
BmgT120I	GGNCC	8 cut(s)	393, 424, 498, 553, 566, 644, 885, 947
BmiI	GGNNCC	6 cut(s)	198, 426, 500, 554, 645, 948
BmrFI	CCNGG	6 cut(s)	379, 512, 573, 918, 1259, 1260
BmrI	ACTGGG	1 cut(s)	390
BmsI	GCATC	2 cut(s)	260, 1126
BmuI	ACTGGG	1 cut(s)	390
BpmI	CTGGAG	2 cut(s)	708, 936
BpuMI	CCSGG	2 cut(s)	1259, 1260
BsaJI	CCNNGG	3 cut(s)	917, 1258, 1259
BsaXI	ACNNNNNCTCC	2 cut(s)	780, 810
Bsc4I	CCNNNNNNNGG	4 cut(s)	548, 549, 550, 771
Bse1I	ACTGG	1 cut(s)	396
BseBI	CCWGG	4 cut(s)	379, 512, 573, 918
BseDI	CCNNGG	3 cut(s)	917, 1258, 1259
BseGI	GGATG	3 cut(s)	387, 520, 841
BseLI	CCNNNNNNNGG	4 cut(s)	548, 549, 550, 771
BseMII	CTCAG	4 cut(s)	255, 603, 669, 1214
BseNI	ACTGG	1 cut(s)	396
BseRI	GAGGAG	1 cut(s)	1121
BseXI	GCAGC	6 cut(s)	64, 107, 591, 748, 1020, 1109
BshFI	GGCC	3 cut(s)	394, 499, 886
BshNI	GGYRCC	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	1258
BsiSI	CCGG	1 cut(s)	1259
BslFI	GGGAC	3 cut(s)	328, 410, 960
BslI	CCNNNNNNNGG	4 cut(s)	548, 549, 550, 771
BsmAI	GTCTC	2 cut(s)	953, 1160
BsmFI	GGGAC	3 cut(s)	328, 410, 960
BsnI	GGCC	3 cut(s)	394, 499, 886
BsoBI	CYCGRG	1 cut(s)	1258
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	5 cut(s)	70, 692, 928, 964, 1027
BspACI	CCGC	3 cut(s)	249, 873, 1044
BspANI	GGCC	3 cut(s)	394, 499, 886
BspCNI	CTCAG	4 cut(s)	254, 604, 670, 1213
BspHI	TCATGA	1 cut(s)	139
BspLI	GGNNCC	6 cut(s)	198, 426, 500, 554, 645, 948
BspMI	ACCTGC	1 cut(s)	1079
BspT107I	GGYRCC	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	396
BssECI	CCNNGG	3 cut(s)	917, 1258, 1259
BssMI	GATC	5 cut(s)	70, 692, 928, 964, 1027
BssSI	CACGAG	1 cut(s)	597
Bst2BI	CACGAG	1 cut(s)	597
Bst2UI	CCWGG	4 cut(s)	379, 512, 573, 918
Bst4CI	ACNGT	4 cut(s)	11, 188, 755, 865
Bst6I	CTCTTC	1 cut(s)	966
BstAPI	GCANNNNNTGC	1 cut(s)	1094
BstC8I	GCNNGC	2 cut(s)	935, 1048
BstDEI	CTNAG	9 cut(s)	110, 208, 241, 612, 678, 911, 1141, 1200, 1272
BstF5I	GGATG	3 cut(s)	387, 520, 841
BstH2I	RGCGCY	1 cut(s)	925
BstHHI	GCGC	1 cut(s)	924
BstKTI	GATC	5 cut(s)	73, 695, 931, 967, 1030
BstMAI	GTCTC	2 cut(s)	953, 1160
BstMBI	GATC	5 cut(s)	70, 692, 928, 964, 1027
BstMWI	GCNNNNNNNGC	4 cut(s)	505, 614, 930, 1094
BstNI	CCWGG	4 cut(s)	379, 512, 573, 918
BstNSI	RCATGY	1 cut(s)	229
BstSCI	CCNGG	6 cut(s)	377, 510, 571, 916, 1257, 1258
BstSFI	CTRYAG	1 cut(s)	603
BstV1I	GCAGC	6 cut(s)	64, 107, 591, 748, 1020, 1109
BsuI	GTATCC	1 cut(s)	995
BsuRI	GGCC	3 cut(s)	394, 499, 886
BtsCI	GGATG	3 cut(s)	387, 520, 841
BtsIMutI	CAGTG	4 cut(s)	7, 403, 702, 861
BveI	ACCTGC	1 cut(s)	1079
Cac8I	GCNNGC	2 cut(s)	935, 1048
CaiI	CAGNNNCTG	1 cut(s)	1061
CciI	TCATGA	1 cut(s)	139
CfoI	GCGC	1 cut(s)	924
Cfr13I	GGNCC	8 cut(s)	393, 424, 498, 553, 566, 644, 885, 947
Cfr9I	CCCGGG	1 cut(s)	1258
Csp6I	GTAC	2 cut(s)	165, 197
CviAII	CATG	6 cut(s)	53, 140, 226, 559, 592, 1025
CviQI	GTAC	2 cut(s)	165, 197
DdeI	CTNAG	9 cut(s)	110, 208, 241, 612, 678, 911, 1141, 1200, 1272
DpnI	GATC	5 cut(s)	72, 694, 930, 966, 1029
DpnII	GATC	5 cut(s)	70, 692, 928, 964, 1027
DraI	TTTAAA	1 cut(s)	361
Eam1104I	CTCTTC	1 cut(s)	966
EarI	CTCTTC	1 cut(s)	966
Eco32I	GATATC	2 cut(s)	134, 859
Eco47I	GGWCC	5 cut(s)	424, 553, 566, 644, 947
Eco57I	CTGAAG	2 cut(s)	85, 267
Eco88I	CYCGRG	1 cut(s)	1258
EcoO109I	RGGNCCY	3 cut(s)	424, 553, 947
EcoRI	GAATTC	2 cut(s)	518, 1264
EcoRII	CCWGG	4 cut(s)	377, 510, 571, 916
EcoRV	GATATC	2 cut(s)	134, 859
FaeI	CATG	6 cut(s)	56, 143, 229, 562, 595, 1028
FalI	AAGNNNNNCTT	2 cut(s)	1077, 1109
FaqI	GGGAC	3 cut(s)	328, 410, 960
FatI	CATG	6 cut(s)	52, 139, 225, 558, 591, 1024
Fnu4HI	GCNGC	7 cut(s)	78, 96, 580, 762, 873, 1009, 1098
FokI	GGATG	3 cut(s)	394, 527, 848
Fsp4HI	GCNGC	7 cut(s)	78, 96, 580, 762, 873, 1009, 1098
FspBI	CTAG	3 cut(s)	74, 129, 162
GlaI	GCGC	1 cut(s)	923
GluI	GCNGC	7 cut(s)	78, 96, 580, 762, 873, 1009, 1098
GsuI	CTGGAG	2 cut(s)	708, 936
HaeII	RGCGCY	1 cut(s)	925
HaeIII	GGCC	3 cut(s)	394, 499, 886
HapII	CCGG	1 cut(s)	1259
HhaI	GCGC	1 cut(s)	924
Hin1II	CATG	6 cut(s)	56, 143, 229, 562, 595, 1028
Hin6I	GCGC	1 cut(s)	922
HinP1I	GCGC	1 cut(s)	922
HincII	GTYRAC	1 cut(s)	818
HindII	GTYRAC	1 cut(s)	818
HinfI	GANTC	3 cut(s)	472, 674, 1236
HpaII	CCGG	1 cut(s)	1259
HphI	GGTGA	2 cut(s)	478, 683
Hpy166II	GTNNAC	1 cut(s)	818
Hpy188I	TCNGA	9 cut(s)	19, 70, 244, 286, 459, 613, 679, 802, 1041
Hpy8I	GTNNAC	1 cut(s)	818
HpyAV	CCTTC	6 cut(s)	109, 304, 424, 634, 676, 769
HpyCH4III	ACNGT	4 cut(s)	11, 188, 755, 865
HpyCH4V	TGCA	9 cut(s)	25, 87, 151, 304, 579, 844, 1008, 1097, 1156
HpyF10VI	GCNNNNNNNGC	4 cut(s)	505, 614, 930, 1094
HpyF3I	CTNAG	9 cut(s)	110, 208, 241, 612, 678, 911, 1141, 1200, 1272
Hsp92II	CATG	6 cut(s)	56, 143, 229, 562, 595, 1028
HspAI	GCGC	1 cut(s)	922
KpnI	GGTACC	1 cut(s)	200
Kzo9I	GATC	5 cut(s)	70, 692, 928, 964, 1027
LmnI	GCTCC	2 cut(s)	4, 727
Lsp1109I	GCAGC	6 cut(s)	64, 107, 591, 748, 1020, 1109
LweI	GCATC	2 cut(s)	260, 1126
MaeI	CTAG	3 cut(s)	74, 129, 162
MalI	GATC	5 cut(s)	72, 694, 930, 966, 1029
MboI	GATC	5 cut(s)	70, 692, 928, 964, 1027
MboII	GAAGA	9 cut(s)	185, 224, 246, 273, 350, 353, 455, 481, 983
MfeI	CAATTG	2 cut(s)	289, 476
MhlI	GDGCHC	1 cut(s)	9
MlyI	GAGTC	1 cut(s)	1230
MmeI	TCCRAC	2 cut(s)	55, 207
MseI	TTAA	5 cut(s)	347, 360, 435, 1073, 1149
MslI	CAYNNNNRTG	1 cut(s)	513
MspI	CCGG	1 cut(s)	1259
MspR9I	CCNGG	6 cut(s)	379, 512, 573, 918, 1259, 1260
MunI	CAATTG	2 cut(s)	289, 476
MvaI	CCWGG	4 cut(s)	379, 512, 573, 918
MwoI	GCNNNNNNNGC	4 cut(s)	505, 614, 930, 1094
NciI	CCSGG	2 cut(s)	1259, 1260
NdeII	GATC	5 cut(s)	70, 692, 928, 964, 1027
NlaIII	CATG	6 cut(s)	56, 143, 229, 562, 595, 1028
NlaIV	GGNNCC	6 cut(s)	198, 426, 500, 554, 645, 948
NspI	RCATGY	1 cut(s)	229
PagI	TCATGA	1 cut(s)	139
PciI	ACATGT	1 cut(s)	225
PfeI	GAWTC	2 cut(s)	472, 674
PkrI	GCNGC	7 cut(s)	79, 97, 581, 763, 874, 1010, 1099
PleI	GAGTC	1 cut(s)	1230
PpsI	GAGTC	1 cut(s)	1230
PpuMI	RGGWCCY	3 cut(s)	424, 553, 947
PscI	ACATGT	1 cut(s)	225
PshBI	ATTAAT	1 cut(s)	1073
Psp5II	RGGWCCY	3 cut(s)	424, 553, 947
Psp6I	CCWGG	4 cut(s)	377, 510, 571, 916
PspGI	CCWGG	4 cut(s)	377, 510, 571, 916
PspN4I	GGNNCC	6 cut(s)	198, 426, 500, 554, 645, 948
PspPI	GGNCC	8 cut(s)	393, 424, 498, 553, 566, 644, 885, 947
PspPPI	RGGWCCY	3 cut(s)	424, 553, 947
PsrI	GAACNNNNNNTAC	2 cut(s)	148, 180
PstNI	CAGNNNCTG	1 cut(s)	1061
RsaI	GTAC	2 cut(s)	166, 198
RsaNI	GTAC	2 cut(s)	165, 197
RseI	CAYNNNNRTG	1 cut(s)	513
SaqAI	TTAA	5 cut(s)	347, 360, 435, 1073, 1149
SatI	GCNGC	7 cut(s)	78, 96, 580, 762, 873, 1009, 1098
Sau3AI	GATC	5 cut(s)	70, 692, 928, 964, 1027
Sau96I	GGNCC	8 cut(s)	393, 424, 498, 553, 566, 644, 885, 947
ScaI	AGTACT	1 cut(s)	166
SchI	GAGTC	1 cut(s)	1230
ScrFI	CCNGG	6 cut(s)	379, 512, 573, 918, 1259, 1260
SduI	GDGCHC	1 cut(s)	9
SfaNI	GCATC	2 cut(s)	260, 1126
SfcI	CTRYAG	1 cut(s)	603
SinI	GGWCC	5 cut(s)	424, 553, 566, 644, 947
SmaI	CCCGGG	1 cut(s)	1260
SmiMI	CAYNNNNRTG	1 cut(s)	513
SsiI	CCGC	3 cut(s)	249, 873, 1044
SspMI	CTAG	3 cut(s)	74, 129, 162
StyD4I	CCNGG	6 cut(s)	377, 510, 571, 916, 1257, 1258
TaaI	ACNGT	4 cut(s)	11, 188, 755, 865
TaqI	TCGA	1 cut(s)	828
TatI	WGTACW	1 cut(s)	164
TauI	GCSGC	1 cut(s)	875
TfiI	GAWTC	2 cut(s)	472, 674
Tru1I	TTAA	5 cut(s)	347, 360, 435, 1073, 1149
Tru9I	TTAA	5 cut(s)	347, 360, 435, 1073, 1149
TscAI	CASTG	4 cut(s)	14, 403, 702, 868
TseI	GCWGC	6 cut(s)	77, 95, 579, 761, 1008, 1097
TspDTI	ATGAA	7 cut(s)	186, 246, 398, 531, 727, 759, 1016
TspGWI	ACGGA	2 cut(s)	476, 971
TspMI	CCCGGG	1 cut(s)	1258
TspRI	CASTG	4 cut(s)	14, 403, 702, 868
VpaK11BI	GGWCC	5 cut(s)	424, 553, 566, 644, 947
VspI	ATTAAT	1 cut(s)	1073
XapI	RAATTY	3 cut(s)	518, 625, 1264
XbaI	TCTAGA	1 cut(s)	128
XceI	RCATGY	1 cut(s)	229
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190
XmaI	CCCGGG	1 cut(s)	1258
XspI	CTAG	3 cut(s)	74, 129, 162
ZrmI	AGTACT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.