Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006784

Physical Location & Seq

Genomic Coordinates Forward (+)

28676675 .. 28683043

Gene Structure 6369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00105270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3012 bp

ATGCCTTCAAAGGGCAAGAAGAACTCAAAGTCCCAATCGAGGCTGTCCAATTCTGACAGCTTTGCCTCTTCTGGGTCGATCGATTTTGAACCCAATGAAGTGGGTTTTGCTACCTCTCTTGAACAAGCTTCCAGCAAATACCCATCTCTGATTGGGAAATCTGCTTTCATTGGTCAAGTCACCGATGTCGATGACACCTCCAAAAGCTGTAAAATTTGGCTTTCAGAGCCTTCCATGGTTGCCAATTCCCTCACTCCTGGCTCCATTGTATCGGTGTCACTACCTTGTTTGAGAAGTAGAGTTTCAGAGACCTTTCCTCTCAGCTCATTAGCAGATGAATGTGCTAGATGCTTCGGGGTTGAGTCTTGCGAAGGTTTGGCTAATGAACCAGGGAACTACTTTGCTCTTGCAACTATATTTCCTTCTTCTAAGGTTTCAAAGAACGGGGTACGACTGTCTTCAAATCTTTCAAAGACCATGGGTTGTCCTGCATCAGGCAGGATCATATTTATCCACTCCGTACAAAATTCAGTCCGAGCTGGTCTTTTAAGTGATACAGAAAAACCATCTAGTACCAAAGATTGCCTCTCTGTGTCCGACTGTAAGGAGTTAATTTTGGAGCTACTCCATTCCAACAGTAGATTAACTATGAACGCTACCTCCACAAACACTTCTGCTGAAAAATCGTTTTACCGGCCTGAAAATGGAATGCCTGCATCCCCTAAGACACCATTGAATCCATCAAAGCTTAGCTTTTCTAATAGAAGTCCATTAGGTTCACCTCGTCGTGAGGAGTCAGCATCAAGTGTAATCACTCCAGATGAAAAATTTGTTGAACCTTTTGATGTTCAAGAGGTTTTAGGGGATGACACTTCAAAAAGACTTCTTCAGACGTGTGCTACTACATGGTTGTATTCTCGTTGTTTACTTCGTGGAAATCTAGTGACTATTCCGGTGCTTTCACAGCATTGTTTACTTCGAGTCATTGGTGCTAAGAGTTTATCAGATGATAAAGCTAATAATGACTCGCTTCATGAGTCCTCTGAGTTAGTGGACAAAGTAAATGATGCTTTTCTAGTGAAGCGGGAAACAAAAGTATGCTTTCATTTGCCATCAAACCTGGAATCTAAAAGAAGAGATCTTTCTATGGTGCAATGCAAGGATGCTATAGCTAATACAGGAGATGACCCATCAAGACTGGGTGGTCTTTCAAAAGAATATGCAGTTTTGAAAGACATCATAATATCATCATCTATGGACACCTTGTCACGTCTTGGTTTACGACCTACAAAGGGAGTGCTTCTTCATGGTCCGCCTGGTACGGGAAAGACTTCTTTGGCTCGGTTATGTGCCCGTGATGCTGGTGTCAACTTTTTCTCTGTCAATGGACCTGAAGTTGTGAGTCAGTACTATGGAAAAAGTGAGCAAGCCTTACGTGAAGTTTTTGATTCAGCTAGCCAAGATGCACCTTCTGTGGTATTCATTGATGAGTTGGATGCAATTGCACCTGCAAGGAAGGAGGGAGGTGAAGAGCTATCTCTGAGAATGGTTGCTACACTATTGAATTTGATGGATGGGATTAGTACAACTGAAAGAGTACTTGTAATTGCTGCTACCAACAGGCCTGATAGTATTGAGCCTGCACTCAGGCGACCTGGAAGACTTGACAGGGAAATTGAAATAGGAGTGCCATCTCCCAAGCAACGGCTTGAGATTCTACATGTTCTTGTCGGTGAAATGGAGCACTGTCTTTCAGATGTGCAAGTCCAACAACTTGCTAATGCTACACATGGTTTCGTAGGCTCTGATCTAGCTGCCCTTTGCAACGAGGCAGCCTTCAGTTCTCTTAGGCGTTATGTCAATTCTAGATATCCTCATGATTATTTGCATAGAACATCTAGTACTTCTGAAGATTGTTCCAACAGTCTAATGGTACCTGATTGCTTAGAAGATACAACAGACATGTCAAGGGATTACTCAGATACTGCATCTTCATCTATCACACATATGGCGTTTTCTTCAGAGAATTGTTTGTCTGTGCATTTGAAGGGGACAAATCAAGATGACGATATTGAAGAAGAATTACAAGTGACTTTTAAAGATTTTGAAAGTGCCAGGATAAAAGTGAGGCCCAGTGCTATGCGAGAGGTAATCGTGGAGGTCCCGAAGGTTAATTGGGAAGATGTTGGGGGTCAGACAGAGGTGAAGAATCAATTGATAGAAGCTGTAATGTGGCCCCAAAAGCACCAGGACGAATTCAAGCGTATAGGAATTTCTCCCCCAACAGGGGTCCTCATGTTTGGTCCTCCTGGTTGCAGCAAAACCCTCATGGCTCGTGCAGTAGCTTCTGAGGCACGGCTGAATTTCCTTTCTGTGAAGGGTCCAGAACTTTATAGCAAATGGGTTGGTGAATCTGAGAAGGCTGTGAAATCAGTGTTTGCAAAGGCAAGGGCTAATGCCCCAGCAATCATATTCTTTGATGAAATTGACGGTCTTGCTGCCATTCGTGGGAAGGAAAATGATGGAGTGTCTGTTTCAGATAGGGTCATAAGTCAACTTCTTGTCGAAATGGATGGTTTGCAAGAAAGAGTTGATGTCACTGTTATTGCGGCTACAAATCGGCCCGACAAGATTGATAGTGCGCTTCTAAGACCAGGGCGCTTTGATCGCTTGCTATATGTGGGACCTCCAGATGAGACTGATCGTGAAGAGATATTTCGTATCCATTTGAACAATATGAAATGCAGCTATATCAACAGACGTGATCTTGCTCGTCAGGCCGAAGGCTATACAGGTGCTGATATTAGATTAATCTGTCGGGAAGCAGGTCTTGCAGCTATTGAGGAGAGCTTATGCCGTAAGGAGAGCCTTGATGCCTTAGAAATTAAAATGCAACATTTAGAGACTGCGATTAGACAAGTGAAGCCAACAAAAACTCAGTTTTATCAAGAGCTATCTGGAAAGTTTCAAAGACTCGTTCTTTCTAACATAAACCCGGGGAATTCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AAA

Protein Analysis

1003

Amino Acids

109.87

Weight (kDa)

5.73

Isoelectric Point (pI)

44.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_CI111	PF26429	39 - 174	1.2e-61	CI111 double-psi beta barrel domain
AAA_16	PF13191	431 - 536	2.4e-07	AAA ATPase domain
AAA	PF00004	433 - 562	5e-44	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	586 - 622	4.5e-12	AAA+ lid domain
AAA	PF00004	764 - 895	1.2e-41	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	921 - 951	5.1e-10	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0006784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56690
fragaria_vesca	FvH4_6g32040 FvH4_6g32040 FvH4_6g32040 FvH4_6g32040 FvH4_6g32040
malus_domestica	MD09G1206200.v1.1
prunus_persica	Prupe.3G062600_v2.0.a1 Prupe.3G062600_v2.0.a1 Prupe.3G062600_v2.0.a1 Prupe.3G062600_v2.0.a1 Prupe.3G062600_v2.0.a1
pyrus_communis	pycom09g12300
rosa_chinensis	RchiOBHm_Chr2g0139701
rosa_laevigata	RLG00000019827
rosa_multiflora	Rmu_co8172878.1_g000001 Rmu_sc0009714.1_g000008
rosa_roxburghii	Rroxscaffold_2G00105270
rosa_rugosa	Rorug02G0359300 Rorug04G0364300 Rorug04G0364400
rosa_samantha	Rh2AG397600 Rh2AG409100 Rh2BG419400 Rh4CG452300
rosa_wichuraiana	Rw2G033460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1516
AasI	GACNNNNNNGTC	1 cut(s)	1203
Acc36I	ACCTGC	2 cut(s)	1516, 2816
Acc65I	GGTACC	1 cut(s)	1933
AccB1I	GGYRCC	1 cut(s)	1933
AciI	CCGC	3 cut(s)	1084, 1313, 2609
AclWI	GGATC	1 cut(s)	509
AcsI	RAATTY	8 cut(s)	213, 526, 827, 1564, 2255, 2271, 2362, 3001
AcuI	CTGAAG	5 cut(s)	872, 1413, 1822, 1929, 2004
AfaI	GTAC	9 cut(s)	450, 522, 574, 1321, 1409, 1585, 1599, 1903, 1935
AflIII	ACRYGT	3 cut(s)	893, 1720, 1962
AhdI	GACNNNNNGTC	1 cut(s)	1264
AjiI	CACGTC	3 cut(s)	894, 1271, 2762
AjnI	CCWGG	9 cut(s)	256, 388, 1119, 1315, 1654, 2114, 2247, 2308, 2653
AloI	GAACNNNNNNTCC	4 cut(s)	14, 46, 644, 676
Alw21I	GWGCWC	1 cut(s)	1746
Alw26I	GTCTC	3 cut(s)	302, 2690, 2897
AlwI	GGATC	1 cut(s)	509
AlwNI	CAGNNNCTG	2 cut(s)	1985, 2798
Ama87I	CYCGRG	1 cut(s)	2995
AoxI	GGCC	6 cut(s)	695, 1622, 2129, 2234, 2621, 2778
ApeKI	GCWGC	7 cut(s)	1610, 1814, 1832, 2316, 2498, 2745, 2834
ApoI	RAATTY	8 cut(s)	213, 526, 827, 1564, 2255, 2271, 2362, 3001
AseI	ATTAAT	1 cut(s)	2810
Asp700I	GAANNNNTTC	1 cut(s)	1330
Asp718I	GGTACC	1 cut(s)	1933
AspLEI	GCGC	2 cut(s)	2644, 2661
AsuC2I	CCSGG	2 cut(s)	2996, 2997
AsuHPI	GGTGA	6 cut(s)	172, 771, 1538, 1745, 2215, 2420
AsuNHI	GCTAGC	1 cut(s)	1454
AvaI	CYCGRG	1 cut(s)	2995
AvaII	GGWCC	7 cut(s)	1310, 1388, 2161, 2290, 2303, 2381, 2684
BaeGI	GKGCMC	1 cut(s)	1354
BaeI	ACNNNNGTAYC	2 cut(s)	440, 473
BanI	GGYRCC	1 cut(s)	1933
BarI	GAAGNNNNNNTAC	2 cut(s)	2067, 2099
BauI	CACGAG	1 cut(s)	2334
BbsI	GAAGAC	2 cut(s)	450, 1666
Bbv12I	GWGCWC	1 cut(s)	1746
BbvI	GCAGC	7 cut(s)	1597, 1801, 1844, 2328, 2485, 2757, 2846
BceAI	ACGGC	3 cut(s)	1721, 2372, 2841
BciT130I	CCWGG	9 cut(s)	258, 390, 1121, 1317, 1656, 2116, 2249, 2310, 2655
BciVI	GTATCC	1 cut(s)	2732
BcnI	CCSGG	2 cut(s)	2996, 2997
BcoDI	GTCTC	3 cut(s)	302, 2690, 2897
BfaI	CTAG	8 cut(s)	345, 570, 941, 1076, 1455, 1811, 1866, 1899
BfmI	CTRYAG	1 cut(s)	1167
BfoI	RGCGCY	1 cut(s)	2662
BfuAI	ACCTGC	2 cut(s)	1516, 2816
BfuI	GTATCC	1 cut(s)	2732
BglII	AGATCT	1 cut(s)	1138
BisI	GCNGC	8 cut(s)	1611, 1815, 1833, 2317, 2499, 2610, 2746, 2835
BlpI	GCTNAGC	1 cut(s)	749
BlsI	GCNGC	8 cut(s)	1612, 1816, 1834, 2318, 2500, 2611, 2747, 2836
BmcAI	AGTACT	3 cut(s)	1409, 1599, 1903
Bme18I	GGWCC	7 cut(s)	1310, 1388, 2161, 2290, 2303, 2381, 2684
BmeRI	GACNNNNNGTC	1 cut(s)	1264
BmeT110I	CYCGRG	1 cut(s)	2995
BmgBI	CACGTC	3 cut(s)	894, 1271, 2762
BmiI	GGNNCC	7 cut(s)	262, 1935, 2163, 2237, 2291, 2382, 2685
BmrI	ACTGGG	2 cut(s)	1208, 2127
BmtI	GCTAGC	1 cut(s)	1458
BmuI	ACTGGG	2 cut(s)	1208, 2127
BpiI	GAAGAC	2 cut(s)	450, 1666
BpmI	CTGGAG	2 cut(s)	801, 2673
Bpu1102I	GCTNAGC	1 cut(s)	749
BpuEI	CTTGAG	1 cut(s)	1730
BpuMI	CCSGG	2 cut(s)	2996, 2997
Bsa29I	ATCGAT	1 cut(s)	81
BsaAI	YACGTR	1 cut(s)	1436
BsaI	GGTCTC	1 cut(s)	302
BsaJI	CCNNGG	6 cut(s)	234, 389, 477, 2654, 2995, 2996
BsaWI	WCCGGW	1 cut(s)	952
BsaXI	ACNNNNNCTCC	4 cut(s)	644, 674, 2517, 2547
Bse118I	RCCGGY	1 cut(s)	693
Bse1I	ACTGG	2 cut(s)	1203, 2133
Bse3DI	GCAATG	1 cut(s)	1160
BseBI	CCWGG	9 cut(s)	258, 390, 1121, 1317, 1656, 2116, 2249, 2310, 2655
BseCI	ATCGAT	1 cut(s)	81
BseDI	CCNNGG	6 cut(s)	234, 389, 477, 2654, 2995, 2996
BseGI	GGATG	6 cut(s)	716, 871, 1168, 1501, 1579, 2578
BseMI	GCAATG	1 cut(s)	1160
BseMII	CTCAG	8 cut(s)	334, 1035, 1532, 1660, 1992, 2340, 2406, 2951
BseNI	ACTGG	2 cut(s)	1203, 2133
BseRI	GAGGAG	2 cut(s)	806, 2858
BseSI	GKGCMC	1 cut(s)	1354
BseXI	GCAGC	7 cut(s)	1597, 1801, 1844, 2328, 2485, 2757, 2846
BseYI	CCCAGC	1 cut(s)	2461
BsgI	GTGCAG	2 cut(s)	1626, 2358
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	6 cut(s)	697, 1624, 2131, 2236, 2623, 2780
BshNI	GGYRCC	1 cut(s)	1933
BshVI	ATCGAT	1 cut(s)	81
BsiEI	CGRYCG	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	1746
BsiHKCI	CYCGRG	1 cut(s)	2995
BsiSI	CCGG	3 cut(s)	694, 953, 2996
BslFI	GGGAC	4 cut(s)	16, 2065, 2147, 2697
BsmAI	GTCTC	3 cut(s)	302, 2690, 2897
BsmFI	GGGAC	4 cut(s)	16, 2065, 2147, 2697
BsmI	GAATGC	1 cut(s)	714
BsnI	GGCC	6 cut(s)	697, 1624, 2131, 2236, 2623, 2780
Bso31I	GGTCTC	1 cut(s)	302
BsoBI	CYCGRG	1 cut(s)	2995
Bsp1286I	GDGCHC	2 cut(s)	1354, 1746
Bsp143I	GATC	7 cut(s)	78, 501, 1138, 1807, 2665, 2701, 2764
Bsp1720I	GCTNAGC	1 cut(s)	749
Bsp19I	CCATGG	2 cut(s)	234, 477
BspACI	CCGC	3 cut(s)	1084, 1313, 2609
BspANI	GGCC	6 cut(s)	697, 1624, 2131, 2236, 2623, 2780
BspCNI	CTCAG	8 cut(s)	333, 1036, 1533, 1659, 1991, 2341, 2407, 2950
BspDI	ATCGAT	1 cut(s)	81
BspHI	TCATGA	2 cut(s)	1033, 1876
BspLI	GGNNCC	7 cut(s)	262, 1935, 2163, 2237, 2291, 2382, 2685
BspMI	ACCTGC	2 cut(s)	1516, 2816
BspOI	GCTAGC	1 cut(s)	1458
BspPI	GGATC	1 cut(s)	509
BspQI	GCTCTTC	1 cut(s)	1524
BspT107I	GGYRCC	1 cut(s)	1933
BspTNI	GGTCTC	1 cut(s)	302
BsrDI	GCAATG	1 cut(s)	1160
BsrFI	RCCGGY	1 cut(s)	693
BsrI	ACTGG	2 cut(s)	1203, 2133
BssAI	RCCGGY	1 cut(s)	693
BssECI	CCNNGG	6 cut(s)	234, 389, 477, 2654, 2995, 2996
BssMI	GATC	7 cut(s)	78, 501, 1138, 1807, 2665, 2701, 2764
BssSI	CACGAG	1 cut(s)	2334
BssT1I	CCWWGG	2 cut(s)	234, 477
Bst2BI	CACGAG	1 cut(s)	2334
Bst2UI	CCWGG	9 cut(s)	258, 390, 1121, 1317, 1656, 2116, 2249, 2310, 2655
Bst4CI	ACNGT	7 cut(s)	456, 602, 638, 1748, 1925, 2492, 2602
Bst6I	CTCTTC	4 cut(s)	73, 1129, 1524, 2703
BstAPI	GCANNNNNTGC	1 cut(s)	2831
BstBAI	YACGTR	1 cut(s)	1436
BstC8I	GCNNGC	5 cut(s)	714, 1428, 1456, 1641, 2672
BstDSI	CCRYGG	2 cut(s)	234, 477
BstENI	CCTNNNNNAGG	1 cut(s)	492
BstF5I	GGATG	6 cut(s)	716, 871, 1168, 1501, 1579, 2578
BstH2I	RGCGCY	1 cut(s)	2662
BstHHI	GCGC	2 cut(s)	2644, 2661
BstKTI	GATC	7 cut(s)	81, 504, 1141, 1810, 2668, 2704, 2767
BstMAI	GTCTC	3 cut(s)	302, 2690, 2897
BstMBI	GATC	7 cut(s)	78, 501, 1138, 1807, 2665, 2701, 2764
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	8 cut(s)	226, 964, 1358, 2242, 2351, 2667, 2777, 2831
BstNI	CCWGG	9 cut(s)	258, 390, 1121, 1317, 1656, 2116, 2249, 2310, 2655
BstNSI	RCATGY	2 cut(s)	1724, 1966
BstSFI	CTRYAG	1 cut(s)	1167
BstSLI	GKGCMC	1 cut(s)	1354
BstV1I	GCAGC	7 cut(s)	1597, 1801, 1844, 2328, 2485, 2757, 2846
BstV2I	GAAGAC	2 cut(s)	450, 1666
BstX2I	RGATCY	1 cut(s)	1138
BstXI	CCANNNNNNTGG	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	1138
Bsu15I	ATCGAT	1 cut(s)	81
BsuI	GTATCC	1 cut(s)	2732
BsuRI	GGCC	6 cut(s)	697, 1624, 2131, 2236, 2623, 2780
BsuTUI	ATCGAT	1 cut(s)	81
BtgI	CCRYGG	2 cut(s)	234, 477
BtrI	CACGTC	3 cut(s)	894, 1271, 2762
BtsCI	GGATG	6 cut(s)	716, 871, 1168, 1501, 1579, 2578
BtsIMutI	CAGTG	4 cut(s)	1744, 2140, 2439, 2598
BveI	ACCTGC	2 cut(s)	1516, 2816
Cac8I	GCNNGC	5 cut(s)	714, 1428, 1456, 1641, 2672
CaiI	CAGNNNCTG	2 cut(s)	1985, 2798
CciI	TCATGA	2 cut(s)	1033, 1876
CfoI	GCGC	2 cut(s)	2644, 2661
Cfr10I	RCCGGY	1 cut(s)	693
Cfr9I	CCCGGG	1 cut(s)	2995
ClaI	ATCGAT	1 cut(s)	81
Csp6I	GTAC	9 cut(s)	449, 521, 573, 1320, 1408, 1584, 1598, 1902, 1934
CviQI	GTAC	9 cut(s)	449, 521, 573, 1320, 1408, 1584, 1598, 1902, 1934
DpnI	GATC	7 cut(s)	80, 503, 1140, 1809, 2667, 2703, 2766
DpnII	GATC	7 cut(s)	78, 501, 1138, 1807, 2665, 2701, 2764
DraI	TTTAAA	1 cut(s)	2098
DrdI	GACNNNNNNGTC	1 cut(s)	1203
DriI	GACNNNNNGTC	1 cut(s)	1264
DseDI	GACNNNNNNGTC	1 cut(s)	1203
Eam1104I	CTCTTC	4 cut(s)	73, 1129, 1524, 2703
Eam1105I	GACNNNNNGTC	1 cut(s)	1264
EarI	CTCTTC	4 cut(s)	73, 1129, 1524, 2703
EciI	GGCGGA	1 cut(s)	1302
Eco130I	CCWWGG	2 cut(s)	234, 477
Eco147I	AGGCCT	1 cut(s)	1624
Eco31I	GGTCTC	1 cut(s)	302
Eco32I	GATATC	1 cut(s)	1871
Eco47I	GGWCC	7 cut(s)	1310, 1388, 2161, 2290, 2303, 2381, 2684
Eco57I	CTGAAG	5 cut(s)	872, 1413, 1822, 1929, 2004
Eco88I	CYCGRG	1 cut(s)	2995
EcoNI	CCTNNNNNAGG	1 cut(s)	492
EcoO109I	RGGNCCY	3 cut(s)	2161, 2290, 2684
EcoRI	GAATTC	2 cut(s)	2255, 3001
EcoRII	CCWGG	9 cut(s)	256, 388, 1119, 1315, 1654, 2114, 2247, 2308, 2653
EcoRV	GATATC	1 cut(s)	1871
EcoT14I	CCWWGG	2 cut(s)	234, 477
ErhI	CCWWGG	2 cut(s)	234, 477
FalI	AAGNNNNNCTT	4 cut(s)	737, 769, 2814, 2846
FaqI	GGGAC	4 cut(s)	16, 2065, 2147, 2697
FauI	CCCGC	1 cut(s)	1077
FauNDI	CATATG	1 cut(s)	2007
Fnu4HI	GCNGC	8 cut(s)	1611, 1815, 1833, 2317, 2499, 2610, 2746, 2835
FokI	GGATG	6 cut(s)	703, 878, 1175, 1508, 1586, 2585
Fsp4HI	GCNGC	8 cut(s)	1611, 1815, 1833, 2317, 2499, 2610, 2746, 2835
FspBI	CTAG	8 cut(s)	345, 570, 941, 1076, 1455, 1811, 1866, 1899
GlaI	GCGC	2 cut(s)	2643, 2660
GluI	GCNGC	8 cut(s)	1611, 1815, 1833, 2317, 2499, 2610, 2746, 2835
GsaI	CCCAGC	1 cut(s)	2465
GsuI	CTGGAG	2 cut(s)	801, 2673
HaeII	RGCGCY	1 cut(s)	2662
HaeIII	GGCC	6 cut(s)	697, 1624, 2131, 2236, 2623, 2780
HapII	CCGG	3 cut(s)	694, 953, 2996
HhaI	GCGC	2 cut(s)	2644, 2661
Hin6I	GCGC	2 cut(s)	2642, 2659
HinP1I	GCGC	2 cut(s)	2642, 2659
HincII	GTYRAC	2 cut(s)	1369, 2555
HindII	GTYRAC	2 cut(s)	1369, 2555
HindIII	AAGCTT	2 cut(s)	126, 746
HpaII	CCGG	3 cut(s)	694, 953, 2996
HphI	GGTGA	6 cut(s)	172, 771, 1538, 1745, 2215, 2420
Hpy166II	GTNNAC	7 cut(s)	779, 926, 974, 1054, 1280, 1369, 2555
Hpy8I	GTNNAC	7 cut(s)	779, 926, 974, 1054, 1280, 1369, 2555
Hpy99I	CGWCG	1 cut(s)	789
HpyCH4III	ACNGT	7 cut(s)	456, 602, 638, 1748, 1925, 2492, 2602
HpyCH4IV	ACGT	4 cut(s)	893, 1270, 1435, 2761
HpyF10VI	GCNNNNNNNGC	8 cut(s)	226, 964, 1358, 2242, 2351, 2667, 2777, 2831
HpySE526I	ACGT	4 cut(s)	893, 1270, 1435, 2761
HspAI	GCGC	2 cut(s)	2642, 2659
KpnI	GGTACC	1 cut(s)	1937
Kzo9I	GATC	7 cut(s)	78, 501, 1138, 1807, 2665, 2701, 2764
LguI	GCTCTTC	1 cut(s)	1524
LmnI	GCTCC	3 cut(s)	266, 619, 1741
Lsp1109I	GCAGC	7 cut(s)	1597, 1801, 1844, 2328, 2485, 2757, 2846
MaeI	CTAG	8 cut(s)	345, 570, 941, 1076, 1455, 1811, 1866, 1899
MaeII	ACGT	4 cut(s)	893, 1270, 1435, 2761
MaeIII	GTNAC	6 cut(s)	178, 276, 943, 1266, 2089, 2596
MalI	GATC	7 cut(s)	80, 503, 1140, 1809, 2667, 2703, 2766
MboI	GATC	7 cut(s)	78, 501, 1138, 1807, 2665, 2701, 2764
MfeI	CAATTG	2 cut(s)	1500, 2213
MflI	RGATCY	1 cut(s)	1138
MhlI	GDGCHC	2 cut(s)	1354, 1746
MlyI	GAGTC	7 cut(s)	371, 803, 990, 1019, 1046, 1411, 2967
MmeI	TCCRAC	5 cut(s)	621, 657, 1473, 1792, 1944
MroXI	GAANNNNTTC	1 cut(s)	1330
MseI	TTAA	7 cut(s)	548, 611, 644, 2097, 2172, 2810, 2886
MslI	CAYNNNNRTG	1 cut(s)	2006
MspI	CCGG	3 cut(s)	694, 953, 2996
MunI	CAATTG	2 cut(s)	1500, 2213
Mva1269I	GAATGC	1 cut(s)	714
MvaI	CCWGG	9 cut(s)	258, 390, 1121, 1317, 1656, 2116, 2249, 2310, 2655
MwoI	GCNNNNNNNGC	8 cut(s)	226, 964, 1358, 2242, 2351, 2667, 2777, 2831
NciI	CCSGG	2 cut(s)	2996, 2997
NcoI	CCATGG	2 cut(s)	234, 477
NdeI	CATATG	1 cut(s)	2007
NdeII	GATC	7 cut(s)	78, 501, 1138, 1807, 2665, 2701, 2764
NheI	GCTAGC	1 cut(s)	1454
NlaIV	GGNNCC	7 cut(s)	262, 1935, 2163, 2237, 2291, 2382, 2685
NmuCI	GTSAC	6 cut(s)	178, 276, 943, 1266, 2089, 2596
NspI	RCATGY	2 cut(s)	1724, 1966
PagI	TCATGA	2 cut(s)	1033, 1876
PaqCI	CACCTGC	1 cut(s)	1516
PceI	AGGCCT	1 cut(s)	1624
PciI	ACATGT	2 cut(s)	1720, 1962
PciSI	GCTCTTC	1 cut(s)	1524
PctI	GAATGC	1 cut(s)	714
PdmI	GAANNNNTTC	1 cut(s)	1330
PfeI	GAWTC	6 cut(s)	736, 1124, 1448, 1714, 2209, 2411
PkrI	GCNGC	8 cut(s)	1612, 1816, 1834, 2318, 2500, 2611, 2747, 2836
Ple19I	CGATCG	1 cut(s)	81
PleI	GAGTC	7 cut(s)	370, 802, 989, 1019, 1045, 1410, 2967
PpsI	GAGTC	7 cut(s)	370, 802, 989, 1019, 1045, 1410, 2967
Ppu21I	YACGTR	1 cut(s)	1436
PpuMI	RGGWCCY	3 cut(s)	2161, 2290, 2684
PscI	ACATGT	2 cut(s)	1720, 1962
PshBI	ATTAAT	1 cut(s)	2810
Psp5II	RGGWCCY	3 cut(s)	2161, 2290, 2684
Psp6I	CCWGG	9 cut(s)	256, 388, 1119, 1315, 1654, 2114, 2247, 2308, 2653
PspFI	CCCAGC	1 cut(s)	2461
PspGI	CCWGG	9 cut(s)	256, 388, 1119, 1315, 1654, 2114, 2247, 2308, 2653
PspN4I	GGNNCC	7 cut(s)	262, 1935, 2163, 2237, 2291, 2382, 2685
PspPPI	RGGWCCY	3 cut(s)	2161, 2290, 2684
PsrI	GAACNNNNNNTAC	2 cut(s)	1885, 1917
PstNI	CAGNNNCTG	2 cut(s)	1985, 2798
PsuI	RGATCY	1 cut(s)	1138
PvuI	CGATCG	1 cut(s)	81
RsaI	GTAC	9 cut(s)	450, 522, 574, 1321, 1409, 1585, 1599, 1903, 1935
RsaNI	GTAC	9 cut(s)	449, 521, 573, 1320, 1408, 1584, 1598, 1902, 1934
RseI	CAYNNNNRTG	1 cut(s)	2006
SapI	GCTCTTC	1 cut(s)	1524
SaqAI	TTAA	7 cut(s)	548, 611, 644, 2097, 2172, 2810, 2886
SatI	GCNGC	8 cut(s)	1611, 1815, 1833, 2317, 2499, 2610, 2746, 2835
Sau3AI	GATC	7 cut(s)	78, 501, 1138, 1807, 2665, 2701, 2764
ScaI	AGTACT	3 cut(s)	1409, 1599, 1903
SchI	GAGTC	7 cut(s)	371, 803, 990, 1019, 1046, 1411, 2967
SduI	GDGCHC	2 cut(s)	1354, 1746
SfcI	CTRYAG	1 cut(s)	1167
SinI	GGWCC	7 cut(s)	1310, 1388, 2161, 2290, 2303, 2381, 2684
SmaI	CCCGGG	1 cut(s)	2997
SmiMI	CAYNNNNRTG	1 cut(s)	2006
SmlI	CTYRAG	1 cut(s)	1709
SmoI	CTYRAG	1 cut(s)	1709
SseBI	AGGCCT	1 cut(s)	1624
SsiI	CCGC	3 cut(s)	1084, 1313, 2609
SspMI	CTAG	8 cut(s)	345, 570, 941, 1076, 1455, 1811, 1866, 1899
StuI	AGGCCT	1 cut(s)	1624
StyI	CCWWGG	2 cut(s)	234, 477
TaaI	ACNGT	7 cut(s)	456, 602, 638, 1748, 1925, 2492, 2602
TaiI	ACGT	4 cut(s)	896, 1273, 1438, 2764
TaqI	TCGA	6 cut(s)	38, 77, 81, 189, 979, 2565
TatI	WGTACW	4 cut(s)	1407, 1583, 1597, 1901
TauI	GCSGC	1 cut(s)	2612
TfiI	GAWTC	6 cut(s)	736, 1124, 1448, 1714, 2209, 2411
Tru1I	TTAA	7 cut(s)	548, 611, 644, 2097, 2172, 2810, 2886
Tru9I	TTAA	7 cut(s)	548, 611, 644, 2097, 2172, 2810, 2886
TscAI	CASTG	4 cut(s)	1751, 2140, 2439, 2605
TseFI	GTSAC	6 cut(s)	178, 276, 943, 1266, 2089, 2596
TseI	GCWGC	7 cut(s)	1610, 1814, 1832, 2316, 2498, 2745, 2834
Tsp45I	GTSAC	6 cut(s)	178, 276, 943, 1266, 2089, 2596
TspGWI	ACGGA	1 cut(s)	508
TspMI	CCCGGG	1 cut(s)	2995
TspRI	CASTG	4 cut(s)	1751, 2140, 2439, 2605
VpaK11BI	GGWCC	7 cut(s)	1310, 1388, 2161, 2290, 2303, 2381, 2684
VspI	ATTAAT	1 cut(s)	2810
XagI	CCTNNNNNAGG	1 cut(s)	492
XapI	RAATTY	8 cut(s)	213, 526, 827, 1564, 2255, 2271, 2362, 3001
XbaI	TCTAGA	1 cut(s)	1865
XceI	RCATGY	2 cut(s)	1724, 1966
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1927
XmaI	CCCGGG	1 cut(s)	2995
XmnI	GAANNNNTTC	1 cut(s)	1330
XspI	CTAG	8 cut(s)	345, 570, 941, 1076, 1455, 1811, 1866, 1899
ZrmI	AGTACT	3 cut(s)	1409, 1599, 1903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.