Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003401

Physical Location & Seq

Genomic Coordinates Forward (+)

28392316 .. 28394329

Gene Structure 2014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1229900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGATTCTCGTCAACCATCCTACTGTCCTCAAATCACATTGTTCCTTTGTTAGTGATCATAATTTGTGGGTTGTCACGCCGTTCATGGTTGGGGGTTCTTGTCTTCGCATTTTGAAGGCAACATATCCGGATGGTTTTGAGGAAGATGTTATAGCCACTGTATTACGTGAGATTTTGAAGGGTTTAGAGTATCTTCATCATCATGGCCATATTCATCGAGATGTCAAAGATGACACCAGAGGTTATGGAGCAATTACATGGGCAAATATTTGGTCTTTTGGTAAAACTAGATATTGGAGCTTGCCCATGGTCACGCTTTTTTTCTCAAAGTATCCTCCAATGAAGGTGCATATTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

120

Amino Acids

13.75

Weight (kDa)

8.61

Isoelectric Point (pI)

33.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	2 - 75	2.8e-08	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	4 - 77	1.7e-12	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79640 AT1G79640 AT1G79640 AT1G79640 AT1G79640 AT1G79640
fragaria_vesca	FvH4_6g28050 FvH4_6g28050 FvH4_6g28050 FvH4_6g28050 FvH4_6g28050 FvH4_6g28050 FvH4_6g28050
malus_domestica	MD09G1229900.v1.1 MD17G1228700.v1.1
prunus_persica	Prupe.3G106100_v2.0.a1 Prupe.3G106100_v2.0.a1
pyrus_communis	pycom09g14840 pycom17g23120
rosa_chinensis	RchiOBHm_Chr2g0131781 RchiOBHm_Chr7g0213591
rosa_laevigata	RLG00000019211
rosa_multiflora	Rmu_sc0002589.1_g000040 Rmu_sc0009880.1_g000006
rosa_roxburghii	Rroxscaffold_2G00112600
rosa_rugosa	Rorug02G0299500 Rorug02G0299600 Rorug02G0299700 Rorug02G0299800
rosa_samantha	Rh1BG109800 Rh2AG352000 Rh2BG359100 Rh2CG337600 Rh2DG376500 Rh5CG277400
rosa_wichuraiana	Rw2G028610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	127
AcoI	YGGCCR	1 cut(s)	205
AgsI	TTSAA	2 cut(s)	115, 178
AluBI	AGCT	1 cut(s)	300
AluI	AGCT	1 cut(s)	300
Aor13HI	TCCGGA	1 cut(s)	127
AoxI	GGCC	1 cut(s)	205
ArsI	GACNNNNNNTTYG	2 cut(s)	257, 289
AseI	ATTAAT	1 cut(s)	354
BalI	TGGCCA	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	95
BccI	CCATC	2 cut(s)	24, 125
BceAI	ACGGC	1 cut(s)	64
BciVI	GTATCC	1 cut(s)	342
BclI	TGATCA	1 cut(s)	55
BfaI	CTAG	1 cut(s)	288
BfuI	GTATCC	1 cut(s)	342
BpiI	GAAGAC	1 cut(s)	95
BsaAI	YACGTR	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	306
BsaWI	WCCGGW	1 cut(s)	127
BseAI	TCCGGA	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	2 cut(s)	16, 136
BshFI	GGCC	1 cut(s)	207
BsiSI	CCGG	1 cut(s)	128
BsnI	GGCC	1 cut(s)	207
Bsp13I	TCCGGA	1 cut(s)	127
Bsp143I	GATC	1 cut(s)	55
Bsp19I	CCATGG	1 cut(s)	306
BspANI	GGCC	1 cut(s)	207
BspEI	TCCGGA	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	1 cut(s)	55
BssT1I	CCWWGG	1 cut(s)	306
Bst4CI	ACNGT	2 cut(s)	25, 160
BstBAI	YACGTR	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	302
BstDSI	CCRYGG	1 cut(s)	306
BstF5I	GGATG	2 cut(s)	16, 136
BstKTI	GATC	1 cut(s)	58
BstMBI	GATC	1 cut(s)	55
BstV2I	GAAGAC	1 cut(s)	95
BsuI	GTATCC	1 cut(s)	342
BsuRI	GGCC	1 cut(s)	207
BtgI	CCRYGG	1 cut(s)	306
BtsCI	GGATG	2 cut(s)	16, 136
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	302
CviAII	CATG	4 cut(s)	85, 203, 258, 307
CviJI	RGCY	3 cut(s)	155, 207, 300
CviKI_1	RGCY	3 cut(s)	155, 207, 300
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
EaeI	YGGCCR	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	4 cut(s)	88, 206, 261, 310
FatI	CATG	4 cut(s)	84, 202, 257, 306
FbaI	TGATCA	1 cut(s)	55
FokI	GGATG	2 cut(s)	3, 143
FspBI	CTAG	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	1 cut(s)	128
Hin1II	CATG	4 cut(s)	88, 206, 261, 310
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188III	TCNNGA	2 cut(s)	128, 218
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	3 cut(s)	109, 172, 337
HpyCH4III	ACNGT	2 cut(s)	25, 160
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	1 cut(s)	349
HpySE526I	ACGT	1 cut(s)	166
Hsp92II	CATG	4 cut(s)	88, 206, 261, 310
Kpn2I	TCCGGA	1 cut(s)	127
Ksp22I	TGATCA	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	55
LmnI	GCTCC	2 cut(s)	248, 297
LpnPI	CCDG	2 cut(s)	141, 250
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	1 cut(s)	166
MaeIII	GTNAC	2 cut(s)	73, 310
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MboII	GAAGA	3 cut(s)	95, 155, 185
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	3 cut(s)	61, 252, 355
MluNI	TGGCCA	1 cut(s)	207
MnlI	CCTC	4 cut(s)	38, 133, 233, 345
Mox20I	TGGCCA	1 cut(s)	207
MroI	TCCGGA	1 cut(s)	127
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	1 cut(s)	354
MslI	CAYNNNNRTG	2 cut(s)	201, 219
Msp20I	TGGCCA	1 cut(s)	207
MspI	CCGG	1 cut(s)	128
NcoI	CCATGG	1 cut(s)	306
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	4 cut(s)	88, 206, 261, 310
NmuCI	GTSAC	2 cut(s)	73, 310
PfeI	GAWTC	1 cut(s)	4
Ppu21I	YACGTR	1 cut(s)	167
PshBI	ATTAAT	1 cut(s)	354
RseI	CAYNNNNRTG	2 cut(s)	201, 219
SaqAI	TTAA	1 cut(s)	354
Sau3AI	GATC	1 cut(s)	55
SetI	ASST	4 cut(s)	169, 244, 302, 348
SmiMI	CAYNNNNRTG	2 cut(s)	201, 219
Sse9I	AATT	3 cut(s)	61, 252, 355
SspI	AATATT	1 cut(s)	268
SspMI	CTAG	1 cut(s)	288
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	2 cut(s)	25, 160
TaiI	ACGT	1 cut(s)	169
TaqI	TCGA	1 cut(s)	217
TasI	AATT	3 cut(s)	61, 252, 355
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	1 cut(s)	163
TseFI	GTSAC	2 cut(s)	73, 310
Tsp45I	GTSAC	2 cut(s)	73, 310
TspDTI	ATGAA	4 cut(s)	73, 185, 203, 356
TspRI	CASTG	1 cut(s)	163
VspI	ATTAAT	1 cut(s)	354
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.