Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003401

Physical Location & Seq

Genomic Coordinates Reverse (-)

33421006 .. 33428853

Gene Structure 7848 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0299600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGGCATTGAGCCGCACTGAACTGCTAAATGAAGCAAAGAAGCTTGAGTTACAAGGATTACAGAAATATTTGATCTCTCCTCTATGTATGCCTAAACTTGATCAACTACTTAATGATGTGTATGCGGCTCGCCGTCCTAAGCCAATTGATTATGGCAATCGAAGAGATTTGATTCGTATTTTCAATGCCATCTCCAAAGAATTATATGGCAATATTGGCAATTCTCCTGTTGTGGAGGTCTATGGCTCTTTTGTGATGGATTTGTTCAGTGATGAAAGTGATCTTGATCTCTCTGTTAATTTCAGCAACAGTGTAGGCGATCTTCCTCGAGATATGAAGATCAAAACTCTTCGGAAGTTTGCTAAAAAGTTTTTGTCTCTTCAAAGGGCCGGGCATGTTGCTGGTGTACAGACGATTGTGAGTGCTAGGGTTCCTATAATCAAGCTTATAGACTGTGGAACCGGAATTGAGTGTGATTTATCAATTGAGAACAGGGATGGCATTGTAAAATCCCAGATTGTCTACATAATATCTAGAATTGACGGAAGGTTTCAGAAACTGAGTTTTATGATGAAAGCCTGGGCAAAAGCACATAATATCAACTGTCCCAAAGATCGAACTCTGAGCTCTTTTGGCATAATATCTTTGGTTGCTTTTCATCTGCAGACTCGAGATCCGCCAATATTACCTCCATTATCTACTTTGTTTGAAGATGGAACTGATCCTGCAACTGTGATGAAAAGAGTAGATACTTATTTGGAGTTTGGAAAAAGAAACAAAGAATCCGTGGCAGACCTTTTCTTTACCCTGTTAGTCAAGGTAGCATCAGCTGAAAAGCTGTGGCAGAAAGGTCTATGTGCAAGTCTGTACGAAGGATCGTGGACATCAAAATTATGGGATCCTCATTATAATGCTATAAATGTTGAGGATTTCACAGATCCATCTCAAAATGTTGCAAGGGCAGTAGGAACAGGAGAATTTCAAGAGATCTATAGGTGTATTCATTCTTCTCTCAGTCACCTGTTGGCATTTTCAGACAACCAGATGGAGGGAAACAACTTGGTGGATCTTTTGTTTGGCACGAAGTCAGTATACAGCCCGAGCAAAGCTAAGCATCCTCCACTCCTTAATGGTCACCAGACAAAGCGGATGCGTGTAAGTAGAGGCTGGGAAGAAAACCAGCCAGAGGAAGGCTGGAAAGGAAAGCAAACTCAAGGTTCAGGAACAGCACAGCACGTGGAAGTTAGAGGAGGAAGCCAACAAGCTGATGGCCCAGTAGGAACGATGCAAGTAGATGGTTTGGGAGGAGCACAGCAATCCCATGATGAAGCAACTTCAAACCTAAATGTTAAAGATGAAACTCCAGTAGTTCATACTCAAACTCCGCTGGTCGGCACATTGTGCAATTCAATTTCTCCCCACACTCCGCTAGTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

479

Amino Acids

53.15

Weight (kDa)

7.64

Isoelectric Point (pI)

35.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTPAP-like_central	PF22600	33 - 178	1.8e-24	Poly(A) RNA polymerase, mitochondrial-like, central palm domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79640 AT1G79640 AT1G79640 AT1G79640 AT1G79640 AT1G79640
fragaria_vesca	FvH4_6g28050 FvH4_6g28050 FvH4_6g28050 FvH4_6g28050 FvH4_6g28050 FvH4_6g28050 FvH4_6g28050
malus_domestica	MD09G1229900.v1.1 MD17G1228700.v1.1
prunus_persica	Prupe.3G106100_v2.0.a1 Prupe.3G106100_v2.0.a1
pyrus_communis	pycom09g14840 pycom17g23120
rosa_chinensis	RchiOBHm_Chr2g0131781 RchiOBHm_Chr7g0213591
rosa_laevigata	RLG00000019211
rosa_multiflora	Rmu_sc0002589.1_g000040 Rmu_sc0009880.1_g000006
rosa_roxburghii	Rroxscaffold_2G00112600
rosa_rugosa	Rorug02G0299500 Rorug02G0299600 Rorug02G0299700 Rorug02G0299800
rosa_samantha	Rh1BG109800 Rh2AG352000 Rh2BG359100 Rh2CG337600 Rh2DG376500 Rh5CG277400
rosa_wichuraiana	Rw2G028610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	909
AccI	GTMKAC	2 cut(s)	522, 1092
AciI	CCGC	6 cut(s)	13, 125, 677, 1147, 1385, 1427
AclWI	GGATC	7 cut(s)	668, 716, 883, 893, 906, 932, 1074
AcsI	RAATTY	1 cut(s)	977
AcvI	CACGTG	1 cut(s)	1237
AdeI	CACNNNGTG	1 cut(s)	1401
AfaI	GTAC	2 cut(s)	408, 869
AfiI	CCNNNNNNNGG	4 cut(s)	1048, 1186, 1190, 1391
AgsI	TTSAA	6 cut(s)	184, 383, 710, 983, 1338, 1410
AjnI	CCWGG	1 cut(s)	578
AluBI	AGCT	7 cut(s)	43, 445, 627, 830, 838, 1109, 1265
AluI	AGCT	7 cut(s)	43, 445, 627, 830, 838, 1109, 1265
Alw21I	GWGCWC	2 cut(s)	629, 1312
Alw26I	GTCTC	1 cut(s)	381
AlwI	GGATC	7 cut(s)	668, 716, 883, 893, 906, 932, 1074
AlwNI	CAGNNNCTG	1 cut(s)	559
Ama87I	CYCGRG	3 cut(s)	327, 669, 1099
AoxI	GGCC	2 cut(s)	387, 1270
ApoI	RAATTY	1 cut(s)	977
AspS9I	GGNCC	2 cut(s)	387, 1271
AsuC2I	CCSGG	1 cut(s)	391
AsuHPI	GGTGA	2 cut(s)	1010, 1127
AvaI	CYCGRG	3 cut(s)	327, 669, 1099
BamHI	GGATCC	1 cut(s)	898
BanII	GRGCYC	1 cut(s)	629
BarI	GAAGNNNNNNTAC	6 cut(s)	306, 338, 991, 1023, 1076, 1108
BbrPI	CACGTG	1 cut(s)	1237
Bbv12I	GWGCWC	2 cut(s)	629, 1312
BccI	CCATC	8 cut(s)	197, 250, 491, 707, 949, 1039, 1262, 1289
BceAI	ACGGC	1 cut(s)	117
BciT130I	CCWGG	1 cut(s)	580
BclI	TGATCA	1 cut(s)	100
BcnI	CCSGG	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	381
BfaI	CTAG	3 cut(s)	426, 534, 1430
BfmI	CTRYAG	2 cut(s)	662, 991
BglII	AGATCT	1 cut(s)	987
BisI	GCNGC	2 cut(s)	13, 126
BlpI	GCTNAGC	1 cut(s)	1110
BlsI	GCNGC	2 cut(s)	14, 127
Bme1390I	CCNGG	2 cut(s)	391, 580
BmeT110I	CYCGRG	3 cut(s)	327, 669, 1099
BmgT120I	GGNCC	2 cut(s)	387, 1271
BmiI	GGNNCC	3 cut(s)	432, 460, 900
BmrFI	CCNGG	2 cut(s)	391, 580
BmrI	ACTGGG	1 cut(s)	1268
BmsI	GCATC	4 cut(s)	833, 1123, 1140, 1275
BmuI	ACTGGG	1 cut(s)	1268
BpmI	CTGGAG	1 cut(s)	1347
Bpu10I	CCTNAGC	1 cut(s)	138
Bpu1102I	GCTNAGC	1 cut(s)	1110
BpuEI	CTTGAG	2 cut(s)	65, 1197
BpuMI	CCSGG	1 cut(s)	391
BsaAI	YACGTR	1 cut(s)	1237
BsaBI	GATNNNNATC	1 cut(s)	285
BsaJI	CCNNGG	2 cut(s)	579, 786
BsaWI	WCCGGW	1 cut(s)	461
BsaXI	ACNNNNNCTCC	2 cut(s)	1366, 1396
Bsc4I	CCNNNNNNNGG	4 cut(s)	1048, 1186, 1190, 1391
Bse1I	ACTGG	2 cut(s)	1274, 1364
Bse8I	GATNNNNATC	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	580
BseDI	CCNNGG	2 cut(s)	579, 786
BseGI	GGATG	3 cut(s)	502, 1114, 1155
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	4 cut(s)	1048, 1186, 1190, 1391
BseMII	CTCAG	3 cut(s)	551, 614, 1027
BseNI	ACTGG	2 cut(s)	1274, 1364
BseRI	GAGGAG	3 cut(s)	69, 1263, 1320
BseYI	CCCAGC	1 cut(s)	1167
BshFI	GGCC	2 cut(s)	389, 1272
BsiHKAI	GWGCWC	2 cut(s)	629, 1312
BsiHKCI	CYCGRG	3 cut(s)	327, 669, 1099
BsiSI	CCGG	2 cut(s)	390, 462
BslFI	GGGAC	1 cut(s)	591
BslI	CCNNNNNNNGG	4 cut(s)	1048, 1186, 1190, 1391
BsmAI	GTCTC	1 cut(s)	381
BsmFI	GGGAC	1 cut(s)	591
BsnI	GGCC	2 cut(s)	389, 1272
BsoBI	CYCGRG	3 cut(s)	327, 669, 1099
Bsp1286I	GDGCHC	2 cut(s)	629, 1312
Bsp1407I	TGTACA	1 cut(s)	406
Bsp1720I	GCTNAGC	1 cut(s)	1110
BspACI	CCGC	6 cut(s)	13, 125, 677, 1147, 1385, 1427
BspANI	GGCC	2 cut(s)	389, 1272
BspCNI	CTCAG	3 cut(s)	552, 615, 1026
BspLI	GGNNCC	3 cut(s)	432, 460, 900
BspMAI	CTGCAG	1 cut(s)	666
BspPI	GGATC	7 cut(s)	668, 716, 883, 893, 906, 932, 1074
BsrGI	TGTACA	1 cut(s)	406
BsrI	ACTGG	2 cut(s)	1274, 1364
BssECI	CCNNGG	2 cut(s)	579, 786
BssNAI	GTATAC	1 cut(s)	1093
Bst1107I	GTATAC	1 cut(s)	1093
Bst2UI	CCWGG	1 cut(s)	580
Bst4CI	ACNGT	4 cut(s)	311, 455, 605, 733
Bst6I	CTCTTC	3 cut(s)	157, 354, 384
BstAPI	GCANNNNNTGC	1 cut(s)	1401
BstAUI	TGTACA	1 cut(s)	406
BstBAI	YACGTR	1 cut(s)	1237
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	5 cut(s)	138, 560, 623, 1013, 1110
BstDSI	CCRYGG	1 cut(s)	786
BstEII	GGTNACC	1 cut(s)	1133
BstF5I	GGATG	3 cut(s)	502, 1114, 1155
BstMAI	GTCTC	1 cut(s)	381
BstMWI	GCNNNNNNNGC	3 cut(s)	216, 633, 1401
BstNI	CCWGG	1 cut(s)	580
BstNSI	RCATGY	1 cut(s)	398
BstPI	GGTNACC	1 cut(s)	1133
BstSCI	CCNGG	2 cut(s)	389, 578
BstSFI	CTRYAG	2 cut(s)	662, 991
BstX2I	RGATCY	5 cut(s)	673, 898, 937, 987, 1066
BstYI	RGATCY	5 cut(s)	673, 898, 937, 987, 1066
BstZ17I	GTATAC	1 cut(s)	1093
BsuRI	GGCC	2 cut(s)	389, 1272
BtgI	CCRYGG	1 cut(s)	786
BtsCI	GGATG	3 cut(s)	502, 1114, 1155
BtsIMutI	CAGTG	3 cut(s)	15, 274, 316
Cac8I	GCNNGC	1 cut(s)	130
CaiI	CAGNNNCTG	1 cut(s)	559
Cfr13I	GGNCC	2 cut(s)	387, 1271
Csp6I	GTAC	2 cut(s)	407, 868
CviAII	CATG	2 cut(s)	395, 1322
CviQI	GTAC	2 cut(s)	407, 868
DdeI	CTNAG	5 cut(s)	138, 560, 623, 1013, 1110
DraIII	CACNNNGTG	1 cut(s)	1401
Eam1104I	CTCTTC	3 cut(s)	157, 354, 384
EarI	CTCTTC	3 cut(s)	157, 354, 384
EciI	GGCGGA	1 cut(s)	666
Ecl136II	GAGCTC	1 cut(s)	627
Eco24I	GRGCYC	1 cut(s)	629
Eco53kI	GAGCTC	1 cut(s)	627
Eco72I	CACGTG	1 cut(s)	1237
Eco88I	CYCGRG	3 cut(s)	327, 669, 1099
Eco91I	GGTNACC	1 cut(s)	1133
EcoICRI	GAGCTC	1 cut(s)	627
EcoO65I	GGTNACC	1 cut(s)	1133
EcoRII	CCWGG	1 cut(s)	578
EcoT38I	GRGCYC	1 cut(s)	629
FaeI	CATG	2 cut(s)	398, 1325
FaqI	GGGAC	1 cut(s)	591
FatI	CATG	2 cut(s)	394, 1321
FbaI	TGATCA	1 cut(s)	100
FblI	GTMKAC	2 cut(s)	522, 1092
Fnu4HI	GCNGC	2 cut(s)	13, 126
FokI	GGATG	3 cut(s)	509, 1101, 1162
FriOI	GRGCYC	1 cut(s)	629
Fsp4HI	GCNGC	2 cut(s)	13, 126
FspBI	CTAG	3 cut(s)	426, 534, 1430
GluI	GCNGC	2 cut(s)	13, 126
GsaI	CCCAGC	1 cut(s)	1171
GsuI	CTGGAG	1 cut(s)	1347
HaeIII	GGCC	2 cut(s)	389, 1272
HapII	CCGG	2 cut(s)	390, 462
Hin1II	CATG	2 cut(s)	398, 1325
HindIII	AAGCTT	2 cut(s)	41, 443
HinfI	GANTC	3 cut(s)	172, 667, 782
HpaII	CCGG	2 cut(s)	390, 462
HphI	GGTGA	2 cut(s)	1010, 1127
Hpy166II	GTNNAC	4 cut(s)	407, 523, 882, 1093
Hpy188I	TCNGA	4 cut(s)	354, 555, 624, 1036
Hpy188III	TCNNGA	6 cut(s)	284, 329, 534, 671, 983, 1221
Hpy8I	GTNNAC	4 cut(s)	407, 523, 882, 1093
HpyAV	CCTTC	3 cut(s)	540, 866, 1184
HpyCH4III	ACNGT	4 cut(s)	311, 455, 605, 733
HpyCH4IV	ACGT	1 cut(s)	1236
HpyCH4V	TGCA	6 cut(s)	664, 728, 860, 956, 1288, 1404
HpyF10VI	GCNNNNNNNGC	3 cut(s)	216, 633, 1401
HpyF3I	CTNAG	5 cut(s)	138, 560, 623, 1013, 1110
HpySE526I	ACGT	1 cut(s)	1236
Hsp92II	CATG	2 cut(s)	398, 1325
Ksp22I	TGATCA	1 cut(s)	100
LmnI	GCTCC	1 cut(s)	1307
LweI	GCATC	4 cut(s)	833, 1123, 1140, 1275
MaeI	CTAG	3 cut(s)	426, 534, 1430
MaeII	ACGT	1 cut(s)	1236
MaeIII	GTNAC	3 cut(s)	48, 1016, 1133
MboII	GAAGA	8 cut(s)	174, 314, 341, 349, 371, 722, 999, 1184
MfeI	CAATTG	2 cut(s)	144, 483
MflI	RGATCY	5 cut(s)	673, 898, 937, 987, 1066
MhlI	GDGCHC	2 cut(s)	629, 1312
MlyI	GAGTC	1 cut(s)	661
MseI	TTAA	5 cut(s)	111, 297, 1128, 1350, 1438
MslI	CAYNNNNRTG	1 cut(s)	909
MspA1I	CMGCKG	2 cut(s)	830, 1387
MspI	CCGG	2 cut(s)	390, 462
MspR9I	CCNGG	2 cut(s)	391, 580
MunI	CAATTG	2 cut(s)	144, 483
MvaI	CCWGG	1 cut(s)	580
MwoI	GCNNNNNNNGC	3 cut(s)	216, 633, 1401
NciI	CCSGG	1 cut(s)	391
NlaIII	CATG	2 cut(s)	398, 1325
NlaIV	GGNNCC	3 cut(s)	432, 460, 900
NmuCI	GTSAC	2 cut(s)	1016, 1133
NspI	RCATGY	1 cut(s)	398
PaeR7I	CTCGAG	2 cut(s)	327, 669
PfeI	GAWTC	2 cut(s)	172, 782
PkrI	GCNGC	2 cut(s)	14, 127
PleI	GAGTC	1 cut(s)	661
PmaCI	CACGTG	1 cut(s)	1237
PmlI	CACGTG	1 cut(s)	1237
PpsI	GAGTC	1 cut(s)	661
Ppu21I	YACGTR	1 cut(s)	1237
PsiI	TTATAA	1 cut(s)	909
Psp124BI	GAGCTC	1 cut(s)	629
Psp6I	CCWGG	1 cut(s)	578
PspCI	CACGTG	1 cut(s)	1237
PspEI	GGTNACC	1 cut(s)	1133
PspFI	CCCAGC	1 cut(s)	1167
PspGI	CCWGG	1 cut(s)	578
PspN4I	GGNNCC	3 cut(s)	432, 460, 900
PspPI	GGNCC	2 cut(s)	387, 1271
PstI	CTGCAG	1 cut(s)	666
PstNI	CAGNNNCTG	1 cut(s)	559
PsuI	RGATCY	5 cut(s)	673, 898, 937, 987, 1066
PvuII	CAGCTG	1 cut(s)	830
RsaI	GTAC	2 cut(s)	408, 869
RsaNI	GTAC	2 cut(s)	407, 868
RseI	CAYNNNNRTG	1 cut(s)	909
SacI	GAGCTC	1 cut(s)	629
SaqAI	TTAA	5 cut(s)	111, 297, 1128, 1350, 1438
SatI	GCNGC	2 cut(s)	13, 126
Sau96I	GGNCC	2 cut(s)	387, 1271
SchI	GAGTC	1 cut(s)	661
ScrFI	CCNGG	2 cut(s)	391, 580
SduI	GDGCHC	2 cut(s)	629, 1312
SfaNI	GCATC	4 cut(s)	833, 1123, 1140, 1275
SfcI	CTRYAG	2 cut(s)	662, 991
Sfr274I	CTCGAG	2 cut(s)	327, 669
SlaI	CTCGAG	2 cut(s)	327, 669
SmiMI	CAYNNNNRTG	1 cut(s)	909
SmlI	CTYRAG	4 cut(s)	44, 327, 669, 1212
SmoI	CTYRAG	4 cut(s)	44, 327, 669, 1212
SsiI	CCGC	6 cut(s)	13, 125, 677, 1147, 1385, 1427
SspI	AATATT	3 cut(s)	68, 214, 684
SspMI	CTAG	3 cut(s)	426, 534, 1430
SstI	GAGCTC	1 cut(s)	629
StyD4I	CCNGG	2 cut(s)	389, 578
TaaI	ACNGT	4 cut(s)	311, 455, 605, 733
TaiI	ACGT	1 cut(s)	1239
TaqI	TCGA	4 cut(s)	160, 328, 616, 670
TatI	WGTACW	1 cut(s)	406
TauI	GCSGC	2 cut(s)	15, 128
TfiI	GAWTC	2 cut(s)	172, 782
Tru1I	TTAA	5 cut(s)	111, 297, 1128, 1350, 1438
Tru9I	TTAA	5 cut(s)	111, 297, 1128, 1350, 1438
TscAI	CASTG	3 cut(s)	22, 274, 316
TseFI	GTSAC	2 cut(s)	1016, 1133
Tsp45I	GTSAC	2 cut(s)	1016, 1133
TspGWI	ACGGA	2 cut(s)	558, 775
TspRI	CASTG	3 cut(s)	22, 274, 316
XapI	RAATTY	1 cut(s)	977
XbaI	TCTAGA	1 cut(s)	533
XceI	RCATGY	1 cut(s)	398
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1191, 1265
XhoI	CTCGAG	2 cut(s)	327, 669
XmiI	GTMKAC	2 cut(s)	522, 1092
XspI	CTAG	3 cut(s)	426, 534, 1430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.